Wall clock time and date at job start Tue Mar 31 2020 11:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 120.00254 * 2 1 4 4 C 1.38228 * 120.00300 * 179.72054 * 3 2 1 5 5 C 1.38233 * 120.00200 * 0.25782 * 4 3 2 6 6 C 1.50704 * 120.00302 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47127 * 90.00004 * 6 5 4 8 8 C 1.34779 * 119.99977 * 180.02562 * 7 6 5 9 9 O 1.21582 * 119.99925 * 354.91697 * 8 7 6 10 10 N 1.34782 * 119.99944 * 174.91785 * 8 7 6 11 11 C 1.47077 * 120.88052 * 184.71787 * 10 8 7 12 12 C 1.53693 * 108.27908 * 128.75228 * 11 10 8 13 13 N 1.46901 * 109.25541 * 54.08063 * 12 11 10 14 14 C 1.46902 * 110.99867 * 172.61049 * 13 12 11 15 15 C 1.50703 * 109.46705 * 294.30065 * 14 13 12 16 16 H 1.07999 * 120.00455 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99706 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00050 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99883 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47385 * 59.99874 * 19 17 15 21 21 H 1.48499 * 109.46955 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46932 * 299.99570 * 19 17 15 23 23 C 1.46901 * 111.27032 * 296.75692 * 13 12 11 24 24 C 1.47080 * 120.88161 * 4.99137 * 10 8 7 25 25 C 1.38242 * 119.99795 * 359.97438 * 5 4 3 26 26 C 1.38236 * 119.99922 * 0.02671 * 25 5 4 27 27 H 1.09004 * 109.46421 * 90.00427 * 1 2 3 28 28 H 1.09001 * 109.47330 * 209.99700 * 1 2 3 29 29 H 1.08998 * 109.47074 * 330.00488 * 1 2 3 30 30 H 1.08003 * 119.99513 * 359.97438 * 3 2 1 31 31 H 1.08005 * 119.99984 * 180.27954 * 4 3 2 32 32 H 1.09005 * 109.46999 * 209.99917 * 6 5 4 33 33 H 1.08998 * 109.47041 * 329.99738 * 6 5 4 34 34 H 0.97009 * 120.00141 * 359.97438 * 7 6 5 35 35 H 1.08992 * 109.62719 * 248.52367 * 11 10 8 36 36 H 1.09007 * 109.62634 * 9.09982 * 11 10 8 37 37 H 1.08999 * 109.64771 * 294.07824 * 12 11 10 38 38 H 1.08999 * 109.42461 * 173.94766 * 12 11 10 39 39 H 1.08997 * 109.47256 * 54.30357 * 14 13 12 40 40 H 1.09000 * 109.46850 * 174.30769 * 14 13 12 41 41 H 0.97003 * 120.00186 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.48994 * 303.14739 * 23 13 12 43 43 H 1.08991 * 109.49253 * 183.06447 * 23 13 12 44 44 H 1.08997 * 109.62918 * 350.89683 * 24 10 8 45 45 H 1.09000 * 109.62495 * 111.48125 * 24 10 8 46 46 H 1.08002 * 120.00143 * 179.97438 * 25 5 4 47 47 H 1.08002 * 119.99614 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0001 0.0063 6 6 5.7787 0.0001 0.0132 7 7 6.2607 -0.0031 1.3966 8 6 7.5846 -0.0031 1.6490 9 8 8.3782 -0.0939 0.7324 10 7 8.0288 0.0974 2.9175 11 6 9.4669 0.2029 3.2077 12 6 9.6848 1.4117 4.1315 13 7 8.8214 1.2806 5.3127 14 6 9.1237 2.3219 6.3039 15 6 10.5155 2.1132 6.8430 16 1 11.1155 1.2897 6.4848 17 6 11.0227 2.9735 7.7935 18 7 10.2919 3.9760 8.2300 19 14 12.7481 2.7153 8.4612 20 1 13.7269 2.7939 7.3473 21 1 13.0537 3.7678 9.4633 22 1 12.8354 1.3793 9.1036 23 6 7.4007 1.3055 4.9397 24 6 7.0888 0.0984 4.0487 25 6 3.5805 -1.1971 0.0014 26 6 2.1982 -1.1971 -0.0044 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6582 2.1325 -0.0004 31 1 4.1205 2.1325 0.0104 32 1 6.1444 -0.8888 -0.5010 33 1 6.1444 0.8912 -0.4969 34 1 5.6269 -0.0044 2.1311 35 1 9.8082 -0.7063 3.7026 36 1 10.0183 0.3464 2.2784 37 1 9.4357 2.3296 3.5989 38 1 10.7281 1.4446 4.4454 39 1 9.0601 3.3023 5.8319 40 1 8.4051 2.2648 7.1214 41 1 10.6488 4.5815 8.8985 42 1 7.1835 2.2248 4.3959 43 1 6.7876 1.2613 5.8398 44 1 6.0673 0.1729 3.6759 45 1 7.2060 -0.8206 4.6230 46 1 4.1205 -2.1325 0.0014 47 1 1.6583 -2.1325 -0.0086 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601257546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:48 Heat of formation + Delta-G solvation = -13.986034 kcal Electronic energy + Delta-G solvation = -25915.877072 eV Core-core repulsion = 22290.643623 eV Total energy + Delta-G solvation = -3625.233449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52407 -40.34388 -39.09364 -36.29190 -35.98927 -34.41876 -33.53527 -32.02134 -31.84708 -30.20654 -28.98671 -27.18397 -25.54124 -24.45718 -23.89446 -23.63840 -22.22057 -21.75031 -20.58221 -19.28812 -18.49356 -17.51422 -16.98214 -16.91025 -16.62302 -16.24479 -16.02825 -15.97969 -15.66332 -15.36483 -15.32738 -14.95770 -14.64780 -14.52584 -14.30908 -14.06263 -13.75083 -13.58228 -13.48364 -13.09455 -12.89406 -12.83476 -12.76233 -12.56020 -12.38478 -12.31101 -12.18822 -11.98893 -11.85703 -11.75301 -11.41633 -11.19819 -10.60870 -10.29976 -9.84805 -9.61065 -9.53857 -9.04887 -8.20390 -6.30204 0.24617 0.48493 1.42926 1.45567 1.53276 1.64227 2.07370 2.40996 2.70931 3.03430 3.11887 3.22881 3.65678 3.88811 3.93688 4.04738 4.07422 4.13303 4.14430 4.24850 4.26812 4.42974 4.52659 4.56713 4.65917 4.67605 4.71010 4.84335 4.85604 4.86840 4.94429 4.95702 5.01291 5.16889 5.18079 5.22119 5.28198 5.39661 5.42979 5.47834 5.63907 5.65043 5.69972 5.89853 6.03390 6.08257 6.25464 6.57721 6.85027 6.89709 7.39457 7.47521 8.90476 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.002319 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.542056 B =12071.636403 C =12827.345920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.104 4.104 5 C -0.121 4.121 6 C 0.185 3.815 7 N -0.731 5.731 8 C 0.705 3.295 9 O -0.633 6.633 10 N -0.628 5.628 11 C 0.146 3.854 12 C 0.057 3.943 13 N -0.538 5.538 14 C 0.209 3.791 15 C -0.524 4.524 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.038 3.962 24 C 0.128 3.872 25 C -0.100 4.100 26 C -0.129 4.129 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.009 0.991 38 H 0.081 0.919 39 H -0.042 1.042 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.018 0.982 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.132 0.868 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 -10.176 -16.548 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.123 4.123 5 C -0.121 4.121 6 C 0.061 3.939 7 N -0.389 5.389 8 C 0.407 3.593 9 O -0.515 6.515 10 N -0.365 5.365 11 C 0.022 3.978 12 C -0.072 4.072 13 N -0.262 5.262 14 C 0.083 3.917 15 C -0.562 4.562 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.091 4.091 24 C 0.005 3.995 25 C -0.118 4.118 26 C -0.147 4.147 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.027 0.973 38 H 0.099 0.901 39 H -0.025 1.025 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.150 0.850 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.475 -10.535 -16.888 27.847 hybrid contribution 0.597 1.342 0.603 1.587 sum -18.878 -9.193 -16.285 26.572 Atomic orbital electron populations 1.20869 0.89538 1.03706 1.03144 1.20339 0.97493 0.93067 0.97579 1.21285 0.93876 0.98649 1.01127 1.21236 0.94781 0.97684 0.98581 1.19756 0.93760 0.94226 1.04386 1.19968 0.89760 1.02374 0.81765 1.45241 1.04406 1.79831 1.09417 1.15959 0.83141 0.77613 0.82607 1.90861 1.55863 1.60104 1.44623 1.47417 1.08141 1.76563 1.04375 1.21597 0.79858 0.97915 0.98434 1.22375 0.98969 0.95632 0.90256 1.62004 1.03410 1.49388 1.11445 1.19369 0.96264 0.86598 0.89461 1.21441 1.00088 1.12249 1.22433 0.91591 1.25908 1.02220 0.94731 0.96812 1.70075 1.39074 1.16985 1.31347 0.85441 0.79138 0.77984 0.78098 1.19378 1.21062 1.19146 1.22513 0.90400 0.96867 0.99307 1.21824 0.92608 0.98716 0.86354 1.21257 0.94694 0.97628 0.98258 1.21310 0.93905 0.98569 1.00908 0.90258 0.90553 0.90847 0.84543 0.85660 0.91154 0.91871 0.75533 0.90200 0.89587 0.97253 0.90097 1.02453 0.97094 0.92713 0.96379 0.89251 0.87695 0.89394 0.84965 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.19 16 2 C -0.08 -1.07 5.88 -19.87 -0.12 -1.19 16 3 C -0.13 -1.82 9.70 22.27 0.22 -1.61 16 4 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 5 C -0.12 -2.01 5.25 -19.86 -0.10 -2.12 16 6 C 0.18 3.76 5.80 85.64 0.50 4.26 16 7 N -0.73 -16.47 5.46 -482.30 -2.63 -19.10 16 8 C 0.71 21.55 8.31 179.05 1.49 23.04 16 9 O -0.63 -24.05 15.83 -3.97 -0.06 -24.11 16 10 N -0.63 -18.79 3.00 -835.05 -2.51 -21.30 16 11 C 0.15 4.82 6.61 86.50 0.57 5.39 16 12 C 0.06 2.25 5.47 86.54 0.47 2.72 16 13 N -0.54 -22.52 4.62 -898.89 -4.15 -26.68 16 14 C 0.21 10.97 4.72 85.56 0.40 11.37 16 15 C -0.52 -29.21 8.41 25.60 0.22 -29.00 16 16 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 19 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.04 1.26 5.62 86.38 0.49 1.75 16 24 C 0.13 3.20 6.59 86.35 0.57 3.77 16 25 C -0.10 -1.46 9.70 22.27 0.22 -1.24 16 26 C -0.13 -1.64 9.70 22.27 0.22 -1.42 16 27 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 29 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 33 H 0.06 1.40 8.09 -2.39 -0.02 1.39 16 34 H 0.41 7.41 5.96 -92.70 -0.55 6.86 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.09 2.92 7.09 -2.38 -0.02 2.90 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 3.42 6.67 -2.39 -0.02 3.41 16 39 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 40 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 44 H 0.11 1.89 5.63 -2.39 -0.01 1.87 16 45 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -70.50 380.16 -0.12 -70.62 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.40 Total: 15.54 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.52 Total: 14.62 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -9.01 Total: -122.65 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.06 Total: -24.11 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.50 -0.12 -70.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601257546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.637 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds