Wall clock time and date at job start Tue Mar 31 2020 11:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99648 * 2 1 4 4 H 1.48498 * 109.46906 * 270.00135 * 3 2 1 5 5 H 1.48509 * 109.47042 * 29.99753 * 3 2 1 6 6 H 1.48495 * 109.47229 * 149.99569 * 3 2 1 7 7 C 1.37869 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00371 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49603 * 59.93455 * 9 7 2 11 11 C 1.53040 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.53820 * 181.31739 * 11 9 7 13 13 C 1.53193 * 109.31346 * 298.63858 * 12 11 9 14 14 N 1.46927 * 108.89634 * 54.55921 * 13 12 11 15 15 C 1.34780 * 120.63067 * 126.46151 * 14 13 12 16 16 O 1.21622 * 119.99680 * 180.55084 * 15 14 13 17 17 C 1.47159 * 119.99967 * 0.55527 * 15 14 13 18 18 C 1.38410 * 126.88485 * 25.45611 * 17 15 14 19 19 C 1.39669 * 105.35822 * 180.02562 * 18 17 15 20 20 N 1.30864 * 107.86627 * 0.02562 * 19 18 17 21 21 N 1.28447 * 110.92393 * 359.71105 * 20 19 18 22 22 C 1.46500 * 125.19229 * 180.27717 * 21 20 19 23 23 C 1.52994 * 109.47133 * 275.34164 * 22 21 20 24 24 C 1.53782 * 113.61380 * 272.11810 * 23 22 21 25 25 C 1.53780 * 87.08369 * 220.01945 * 24 23 22 26 26 C 1.53781 * 113.61447 * 174.62451 * 23 22 21 27 27 C 1.46964 * 118.71474 * 306.64536 * 14 13 12 28 28 H 0.96999 * 120.00938 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.45845 * 61.29868 * 11 9 7 30 30 H 1.08998 * 109.44927 * 301.33396 * 11 9 7 31 31 H 1.08993 * 109.50163 * 178.68193 * 12 11 9 32 32 H 1.09004 * 109.49879 * 58.58663 * 12 11 9 33 33 H 1.08996 * 109.58873 * 174.42345 * 13 12 11 34 34 H 1.09005 * 109.58653 * 294.69996 * 13 12 11 35 35 H 1.07997 * 127.32101 * 359.97438 * 18 17 15 36 36 H 1.08000 * 126.06807 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46871 * 35.34150 * 22 21 20 38 38 H 1.08996 * 109.47084 * 155.34046 * 22 21 20 39 39 H 1.08997 * 112.85262 * 43.42471 * 23 22 21 40 40 H 1.09003 * 113.61281 * 334.56946 * 24 23 22 41 41 H 1.09005 * 113.61265 * 105.47141 * 24 23 22 42 42 H 1.08994 * 113.61605 * 270.88660 * 25 24 23 43 43 H 1.08999 * 113.61301 * 139.97806 * 25 24 23 44 44 H 1.09000 * 113.61702 * 254.52975 * 26 23 22 45 45 H 1.09005 * 113.61314 * 25.43033 * 26 23 22 46 46 H 1.08998 * 109.46647 * 293.57087 * 27 14 13 47 47 H 1.09004 * 109.70730 * 173.28256 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6231 -2.5574 -0.8873 11 6 2.2452 -3.6627 0.0027 12 6 1.4814 -4.9885 -0.0292 13 6 0.6060 -5.0992 1.2231 14 7 -0.2526 -3.9101 1.3101 15 6 -1.5888 -4.0356 1.4347 16 8 -2.2896 -3.0434 1.4957 17 6 -2.1996 -5.3729 1.4972 18 6 -1.5957 -6.5429 1.9239 19 6 -2.5740 -7.5317 1.7973 20 7 -3.6582 -6.9663 1.3310 21 7 -3.4776 -5.7076 1.1498 22 6 -4.4870 -4.7740 0.6440 23 6 -4.4901 -4.8059 -0.8856 24 6 -3.4911 -3.8265 -1.5242 25 6 -4.5742 -3.5295 -2.5747 26 6 -5.6057 -3.9565 -1.5171 27 6 0.3733 -2.5816 1.2544 28 1 -0.4851 0.8400 -0.0004 29 1 2.8564 -3.6174 0.9042 30 1 2.8874 -3.5923 -0.8752 31 1 2.1901 -5.8162 -0.0521 32 1 0.8511 -5.0239 -0.9179 33 1 -0.0137 -5.9934 1.1579 34 1 1.2399 -5.1577 2.1080 35 1 -0.5830 -6.6654 2.2786 36 1 -2.4565 -8.5773 2.0408 37 1 -5.4696 -5.0650 1.0155 38 1 -4.2531 -3.7659 0.9860 39 1 -4.4303 -5.8170 -1.2881 40 1 -3.2513 -2.9725 -0.8907 41 1 -2.6058 -4.3119 -1.9350 42 1 -4.5364 -4.1913 -3.4399 43 1 -4.6398 -2.4765 -2.8485 44 1 -6.4277 -4.5467 -1.9223 45 1 -5.9441 -3.1379 -0.8818 46 1 0.9881 -2.4322 2.1420 47 1 -0.3986 -1.8131 1.2110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:48 Heat of formation + Delta-G solvation = 69.624142 kcal Electronic energy + Delta-G solvation = -28156.113352 eV Core-core repulsion = 24534.505512 eV Total energy + Delta-G solvation = -3621.607840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43991 -39.20183 -38.76718 -36.72123 -33.76223 -32.97808 -31.87532 -30.87602 -29.46995 -28.15727 -25.52735 -25.21858 -25.13148 -23.40620 -22.24583 -21.89166 -21.14701 -19.57980 -19.35616 -18.67353 -16.99470 -16.31589 -16.21330 -15.82786 -15.42934 -15.11194 -14.59843 -14.45781 -14.15866 -13.97055 -13.85994 -13.55221 -13.12898 -12.92293 -12.61544 -12.53325 -12.34627 -12.13212 -12.04180 -11.87114 -11.46840 -11.01649 -10.98881 -10.70273 -10.63062 -10.51893 -10.36662 -10.30784 -10.20368 -10.16465 -9.90783 -9.47283 -9.16814 -9.01205 -8.96863 -8.69819 -8.46704 -7.81665 -6.03805 -4.12088 1.59473 2.52965 2.75192 3.28159 3.36080 3.38191 3.55160 3.71628 4.39865 4.47041 4.65199 4.69072 4.76791 4.81292 4.95299 5.24230 5.26672 5.30434 5.34930 5.42376 5.46917 5.50597 5.66537 5.70342 5.74164 5.82288 5.86381 5.93878 5.99570 6.01262 6.17315 6.19304 6.28736 6.30094 6.56650 6.59128 6.62303 6.63978 6.82859 6.90463 6.94313 7.08808 7.19678 7.58587 7.82293 7.94130 8.12489 8.23805 8.34236 8.70848 8.91886 9.53701 11.01486 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.004802 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.679681 B = 5829.209408 C = 7140.053565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.132 4.132 13 C 0.074 3.926 14 N -0.584 5.584 15 C 0.578 3.422 16 O -0.537 6.537 17 C -0.014 4.014 18 C -0.215 4.215 19 C -0.008 4.008 20 N -0.289 5.289 21 N -0.253 5.253 22 C 0.119 3.881 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.127 4.127 27 C 0.114 3.886 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.170 0.830 36 H 0.182 0.818 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 -12.989 0.376 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.170 4.170 13 C -0.049 4.049 14 N -0.315 5.315 15 C 0.363 3.637 16 O -0.415 6.415 17 C -0.143 4.143 18 C -0.243 4.243 19 C -0.184 4.184 20 N -0.121 5.121 21 N -0.040 5.040 22 C -0.001 4.001 23 C -0.146 4.146 24 C -0.173 4.173 25 C -0.178 4.178 26 C -0.165 4.165 27 C -0.006 4.006 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.187 0.813 36 H 0.199 0.801 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.080 -12.424 0.051 14.820 hybrid contribution 1.461 0.878 0.256 1.724 sum -6.619 -11.546 0.308 13.312 Atomic orbital electron populations 1.69870 1.05711 1.26822 1.49377 1.25034 0.94886 0.99214 0.94779 0.86605 0.79866 0.83502 0.78111 1.20686 1.21187 1.19890 1.21075 0.92935 0.90067 1.51804 0.92341 1.18953 0.92602 0.92359 0.93823 0.95288 1.21645 0.98572 0.94154 1.00596 1.21925 0.98550 0.99037 0.97522 1.22559 0.94255 0.89558 0.98541 1.48245 1.04473 1.09476 1.69289 1.16957 0.82870 0.85763 0.78099 1.90762 1.61021 1.38377 1.51324 1.21783 0.87390 0.96818 1.08360 1.22515 1.01383 0.91210 1.09235 1.23513 0.89827 1.00559 1.04479 1.73128 1.27123 0.92412 1.19444 1.45734 1.08982 1.05358 1.43921 1.22416 0.89972 0.93180 0.94522 1.22963 0.99077 0.99836 0.92727 1.23064 0.96456 0.99593 0.98145 1.22762 0.96467 1.01746 0.96776 1.22855 0.96087 0.99349 0.98191 1.22394 0.98719 0.80674 0.98827 0.92677 0.93141 0.93039 0.92121 0.92292 0.87930 0.91798 0.81258 0.80080 0.88736 0.85734 0.88877 0.88236 0.91853 0.90504 0.91014 0.91333 0.89595 0.93691 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 11.40 55.43 0.63 -24.17 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.10 6.08 -26.61 -0.16 -2.27 16 13 C 0.07 1.14 5.45 -3.71 -0.02 1.12 16 14 N -0.58 -11.42 2.98 -174.10 -0.52 -11.94 16 15 C 0.58 11.46 7.58 -12.64 -0.10 11.37 16 16 O -0.54 -12.20 13.70 5.26 0.07 -12.13 16 17 C -0.01 -0.23 6.59 -82.06 -0.54 -0.77 16 18 C -0.22 -2.95 8.72 -38.98 -0.34 -3.29 16 19 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 20 N -0.29 -4.32 11.90 30.59 0.36 -3.96 16 21 N -0.25 -3.99 3.35 -57.14 -0.19 -4.18 16 22 C 0.12 1.69 5.99 -4.04 -0.02 1.66 16 23 C -0.13 -1.67 3.96 -89.81 -0.36 -2.02 16 24 C -0.14 -2.08 7.63 -25.92 -0.20 -2.27 16 25 C -0.14 -1.74 8.08 -25.92 -0.21 -1.95 16 26 C -0.13 -1.41 7.64 -25.92 -0.20 -1.61 16 27 C 0.11 2.65 5.40 -3.69 -0.02 2.63 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.38 3.34 -51.93 -0.17 1.20 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.91 5.87 -52.49 -0.31 1.60 16 36 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.12 2.01 5.66 -51.93 -0.29 1.71 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.84 7.27 -51.93 -0.38 1.46 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.12 3.37 5.13 -51.93 -0.27 3.11 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -29.95 365.90 -9.56 -39.50 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.30 Total: 7.17 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.11 Total: -11.62 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.29 Total: -44.25 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.95 -9.56 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.129 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds