Wall clock time and date at job start Tue Mar 31 2020 11:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99648 * 2 1 4 4 H 1.48498 * 109.46906 * 270.00135 * 3 2 1 5 5 H 1.48509 * 109.47042 * 29.99753 * 3 2 1 6 6 H 1.48495 * 109.47229 * 149.99569 * 3 2 1 7 7 C 1.37869 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00371 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49603 * 59.93455 * 9 7 2 11 11 C 1.53040 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.53820 * 181.31739 * 11 9 7 13 13 C 1.53193 * 109.31346 * 298.63858 * 12 11 9 14 14 N 1.46927 * 108.89634 * 54.55921 * 13 12 11 15 15 C 1.34780 * 120.63067 * 126.46151 * 14 13 12 16 16 O 1.21622 * 119.99680 * 180.55084 * 15 14 13 17 17 C 1.47159 * 119.99967 * 0.55527 * 15 14 13 18 18 C 1.38410 * 126.88485 * 25.45611 * 17 15 14 19 19 C 1.39669 * 105.35822 * 180.02562 * 18 17 15 20 20 N 1.30864 * 107.86627 * 0.02562 * 19 18 17 21 21 N 1.28447 * 110.92393 * 359.71105 * 20 19 18 22 22 C 1.46500 * 125.19229 * 180.27717 * 21 20 19 23 23 C 1.52994 * 109.47133 * 275.34164 * 22 21 20 24 24 C 1.53782 * 113.61380 * 272.11810 * 23 22 21 25 25 C 1.53780 * 87.08369 * 220.01945 * 24 23 22 26 26 C 1.53781 * 113.61447 * 174.62451 * 23 22 21 27 27 C 1.46964 * 118.71474 * 306.64536 * 14 13 12 28 28 H 0.96999 * 120.00938 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.45845 * 61.29868 * 11 9 7 30 30 H 1.08998 * 109.44927 * 301.33396 * 11 9 7 31 31 H 1.08993 * 109.50163 * 178.68193 * 12 11 9 32 32 H 1.09004 * 109.49879 * 58.58663 * 12 11 9 33 33 H 1.08996 * 109.58873 * 174.42345 * 13 12 11 34 34 H 1.09005 * 109.58653 * 294.69996 * 13 12 11 35 35 H 1.07997 * 127.32101 * 359.97438 * 18 17 15 36 36 H 1.08000 * 126.06807 * 180.02562 * 19 18 17 37 37 H 1.09005 * 109.46871 * 35.34150 * 22 21 20 38 38 H 1.08996 * 109.47084 * 155.34046 * 22 21 20 39 39 H 1.08997 * 112.85262 * 43.42471 * 23 22 21 40 40 H 1.09003 * 113.61281 * 334.56946 * 24 23 22 41 41 H 1.09005 * 113.61265 * 105.47141 * 24 23 22 42 42 H 1.08994 * 113.61605 * 270.88660 * 25 24 23 43 43 H 1.08999 * 113.61301 * 139.97806 * 25 24 23 44 44 H 1.09000 * 113.61702 * 254.52975 * 26 23 22 45 45 H 1.09005 * 113.61314 * 25.43033 * 26 23 22 46 46 H 1.08998 * 109.46647 * 293.57087 * 27 14 13 47 47 H 1.09004 * 109.70730 * 173.28256 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6231 -2.5574 -0.8873 11 6 2.2452 -3.6627 0.0027 12 6 1.4814 -4.9885 -0.0292 13 6 0.6060 -5.0992 1.2231 14 7 -0.2526 -3.9101 1.3101 15 6 -1.5888 -4.0356 1.4347 16 8 -2.2896 -3.0434 1.4957 17 6 -2.1996 -5.3729 1.4972 18 6 -1.5957 -6.5429 1.9239 19 6 -2.5740 -7.5317 1.7973 20 7 -3.6582 -6.9663 1.3310 21 7 -3.4776 -5.7076 1.1498 22 6 -4.4870 -4.7740 0.6440 23 6 -4.4901 -4.8059 -0.8856 24 6 -3.4911 -3.8265 -1.5242 25 6 -4.5742 -3.5295 -2.5747 26 6 -5.6057 -3.9565 -1.5171 27 6 0.3733 -2.5816 1.2544 28 1 -0.4851 0.8400 -0.0004 29 1 2.8564 -3.6174 0.9042 30 1 2.8874 -3.5923 -0.8752 31 1 2.1901 -5.8162 -0.0521 32 1 0.8511 -5.0239 -0.9179 33 1 -0.0137 -5.9934 1.1579 34 1 1.2399 -5.1577 2.1080 35 1 -0.5830 -6.6654 2.2786 36 1 -2.4565 -8.5773 2.0408 37 1 -5.4696 -5.0650 1.0155 38 1 -4.2531 -3.7659 0.9860 39 1 -4.4303 -5.8170 -1.2881 40 1 -3.2513 -2.9725 -0.8907 41 1 -2.6058 -4.3119 -1.9350 42 1 -4.5364 -4.1913 -3.4399 43 1 -4.6398 -2.4765 -2.8485 44 1 -6.4277 -4.5467 -1.9223 45 1 -5.9441 -3.1379 -0.8818 46 1 0.9881 -2.4322 2.1420 47 1 -0.3986 -1.8131 1.2110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:47 Heat of formation + Delta-G solvation = 52.946772 kcal Electronic energy + Delta-G solvation = -28156.836537 eV Core-core repulsion = 24534.505512 eV Total energy + Delta-G solvation = -3622.331025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.59104 -40.75084 -39.85877 -38.33636 -35.49789 -34.25281 -33.51629 -32.28608 -31.06553 -29.26157 -27.10885 -26.68787 -26.61396 -24.51963 -23.68119 -23.36577 -22.43053 -21.06212 -20.45543 -20.10619 -18.65743 -17.94825 -17.60712 -17.13497 -16.71448 -16.51329 -16.31398 -15.93837 -15.44925 -15.24185 -15.13117 -14.84267 -14.62411 -14.47139 -14.13847 -13.98908 -13.75989 -13.46626 -13.40156 -13.12270 -12.89692 -12.67245 -12.55296 -12.28708 -12.23373 -11.97122 -11.78812 -11.67764 -11.48761 -11.43013 -11.29920 -11.13230 -10.96335 -10.76580 -10.52599 -10.16644 -9.86360 -9.43842 -8.11376 -6.28021 0.32321 1.33215 1.40793 1.41277 1.51507 1.71286 2.12332 2.26406 2.42026 3.16829 3.35818 3.44630 3.57566 3.63931 3.76494 3.87401 4.06238 4.14896 4.16077 4.21702 4.34479 4.37302 4.39931 4.55462 4.59919 4.69884 4.76908 4.79150 4.79625 4.81882 4.84587 4.89721 4.94965 4.99345 5.08895 5.17131 5.23983 5.26405 5.34030 5.45272 5.52602 5.57385 5.62324 5.79276 5.88567 5.97844 6.31867 6.54945 6.83856 7.08816 7.19819 7.42092 8.91841 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.004802 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.679681 B = 5829.209408 C = 7140.053565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.042 3.958 10 H -0.016 1.016 11 C -0.107 4.107 12 C -0.125 4.125 13 C 0.069 3.931 14 N -0.589 5.589 15 C 0.572 3.428 16 O -0.581 6.581 17 C -0.048 4.048 18 C -0.197 4.197 19 C 0.003 3.997 20 N -0.298 5.298 21 N -0.262 5.262 22 C 0.117 3.883 23 C -0.114 4.114 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.112 4.112 27 C 0.128 3.872 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.042 0.958 33 H 0.130 0.870 34 H 0.090 0.910 35 H 0.199 0.801 36 H 0.226 0.774 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 -16.269 0.768 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.022 3.978 10 H 0.002 0.998 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.051 4.051 14 N -0.320 5.320 15 C 0.360 3.640 16 O -0.462 6.462 17 C -0.176 4.176 18 C -0.225 4.225 19 C -0.173 4.173 20 N -0.130 5.130 21 N -0.049 5.049 22 C -0.003 4.003 23 C -0.133 4.133 24 C -0.184 4.184 25 C -0.172 4.172 26 C -0.150 4.150 27 C 0.006 3.994 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.108 0.892 35 H 0.216 0.784 36 H 0.243 0.757 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.059 0.941 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.513 -15.739 0.439 17.446 hybrid contribution 1.317 1.852 0.142 2.277 sum -6.196 -13.887 0.581 15.218 Atomic orbital electron populations 1.70072 1.07315 1.27179 1.50541 1.25849 0.95541 1.02740 0.94571 0.85603 0.78884 0.79288 0.78194 1.20229 1.21393 1.18592 1.21497 0.93289 0.91407 1.51170 0.91975 1.18867 0.92999 0.93845 0.92041 0.99795 1.21540 0.97689 0.94165 1.01034 1.21896 0.98866 0.98384 0.97125 1.22928 0.94299 0.88523 0.99373 1.48209 1.05086 1.09367 1.69290 1.17435 0.82704 0.86853 0.77052 1.90737 1.62007 1.40358 1.53063 1.21502 0.88642 0.95972 1.11504 1.22898 1.02636 0.89840 1.07129 1.24255 0.88396 1.02137 1.02466 1.73146 1.28220 0.91853 1.19740 1.45833 1.08743 1.05842 1.44457 1.22398 0.90776 0.91969 0.95130 1.22887 0.98732 0.99600 0.92046 1.22955 0.97101 0.98986 0.99376 1.22794 0.95345 1.02005 0.97025 1.22812 0.96006 0.99113 0.97056 1.21793 0.97236 0.82110 0.98225 0.93181 0.92103 0.93092 0.87520 0.93902 0.85322 0.89229 0.78399 0.75721 0.86418 0.88583 0.88208 0.92546 0.93943 0.88610 0.91527 0.88308 0.89587 0.94076 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.81 11.40 21.44 0.24 -54.57 16 2 C 0.01 0.70 5.30 84.65 0.45 1.15 16 3 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -29.21 8.56 25.60 0.22 -29.00 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 10 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 11 C -0.11 -4.08 5.11 30.62 0.16 -3.92 16 12 C -0.12 -3.71 6.08 30.67 0.19 -3.53 16 13 C 0.07 1.99 5.45 86.36 0.47 2.46 16 14 N -0.59 -23.69 2.98 -822.98 -2.45 -26.14 16 15 C 0.57 23.80 7.58 86.59 0.66 24.46 16 16 O -0.58 -28.84 13.70 -4.10 -0.06 -28.89 16 17 C -0.05 -1.57 6.59 40.79 0.27 -1.31 16 18 C -0.20 -4.74 8.72 22.66 0.20 -4.55 16 19 C 0.00 0.07 12.03 85.18 1.02 1.09 16 20 N -0.30 -8.12 11.90 -57.14 -0.68 -8.80 16 21 N -0.26 -8.09 3.35 -334.69 -1.12 -9.21 16 22 C 0.12 3.39 5.99 86.38 0.52 3.91 16 23 C -0.11 -3.00 3.96 -10.27 -0.04 -3.04 16 24 C -0.15 -4.88 7.63 31.12 0.24 -4.64 16 25 C -0.13 -3.40 8.08 31.12 0.25 -3.14 16 26 C -0.11 -2.40 7.64 31.12 0.24 -2.17 16 27 C 0.13 6.33 5.40 86.36 0.47 6.80 16 28 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.41 8.14 -2.38 -0.02 1.40 16 33 H 0.13 3.01 3.34 -2.39 -0.01 3.00 16 34 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.20 3.49 5.87 -2.91 -0.02 3.47 16 36 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.10 3.38 5.66 -2.39 -0.01 3.36 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.06 2.37 7.27 -2.39 -0.02 2.35 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.85 8.10 -2.38 -0.02 1.84 16 46 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.08 4.72 5.13 -2.39 -0.01 4.71 16 Total: -1.00 -72.32 365.90 4.20 -68.12 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.96 Total: 26.86 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 5.27 Total: -13.35 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.01 Total: -98.72 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.06 Total: -28.89 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.32 4.20 -68.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.068 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds