Wall clock time and date at job start Tue Mar 31 2020 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38255 * 120.00298 * 2 1 4 4 C 1.38213 * 120.00386 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00299 * 359.70407 * 5 4 3 7 7 C 1.38216 * 119.99846 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00440 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.46983 * 321.90668 * 8 7 2 10 10 N 1.46890 * 109.47575 * 201.90682 * 8 7 2 11 11 C 1.50708 * 109.47106 * 81.90460 * 8 7 2 12 12 O 1.21276 * 119.99625 * 57.86823 * 11 8 7 13 13 N 1.34779 * 119.99798 * 237.86981 * 11 8 7 14 14 C 1.47078 * 120.88337 * 5.26155 * 13 11 8 15 15 C 1.53697 * 108.27641 * 128.75585 * 14 13 11 16 16 N 1.46894 * 109.25570 * 54.08119 * 15 14 13 17 17 C 1.46904 * 111.00008 * 172.60565 * 16 15 14 18 18 C 1.50703 * 109.47002 * 59.32693 * 17 16 15 19 19 H 1.08005 * 119.99795 * 0.80898 * 18 17 16 20 20 C 1.37870 * 119.99911 * 180.81519 * 18 17 16 21 21 N 1.31515 * 120.00578 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47330 * 60.00094 * 22 20 18 24 24 H 1.48501 * 109.46948 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47504 * 299.99311 * 22 20 18 26 26 C 1.46893 * 111.27200 * 296.75745 * 16 15 14 27 27 C 1.47081 * 120.87791 * 185.54005 * 13 11 8 28 28 H 1.09002 * 109.47392 * 263.50135 * 1 2 3 29 29 H 1.09004 * 109.47022 * 23.50757 * 1 2 3 30 30 H 1.09001 * 109.47062 * 143.50262 * 1 2 3 31 31 H 1.08003 * 119.99868 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00046 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.00023 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.00546 * 180.30088 * 6 5 4 35 35 H 1.00901 * 111.00597 * 176.04670 * 10 8 7 36 36 H 1.00906 * 111.00251 * 300.00444 * 10 8 7 37 37 H 1.08997 * 109.62927 * 248.52736 * 14 13 11 38 38 H 1.09000 * 109.62642 * 9.10707 * 14 13 11 39 39 H 1.09001 * 109.64843 * 294.08196 * 15 14 13 40 40 H 1.08995 * 109.42079 * 173.94627 * 15 14 13 41 41 H 1.08998 * 109.46929 * 179.32215 * 17 16 15 42 42 H 1.08996 * 109.47041 * 299.32311 * 17 16 15 43 43 H 0.96998 * 120.00546 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49505 * 303.14469 * 26 16 15 45 45 H 1.09000 * 109.49884 * 183.06534 * 26 16 15 46 46 H 1.09002 * 109.62688 * 350.89623 * 27 13 11 47 47 H 1.08999 * 109.62273 * 111.47632 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5622 -2.4123 0.6342 10 7 2.3122 -3.5685 0.5178 11 6 1.0206 -2.8375 -1.4063 12 8 1.8535 -2.9434 -2.2815 13 7 -0.2839 -3.0195 -1.6917 14 6 -1.3194 -2.7838 -0.6741 15 6 -2.3834 -1.8521 -1.2759 16 7 -2.8718 -2.4255 -2.5371 17 6 -4.0121 -1.6590 -3.0571 18 6 -3.5926 -0.2305 -3.2905 19 1 -2.5767 0.0742 -3.0865 20 6 -4.5057 0.6875 -3.7643 21 7 -5.7426 0.3165 -4.0130 22 14 -3.9858 2.4583 -4.0529 23 1 -2.8882 2.4954 -5.0525 24 1 -5.1435 3.2375 -4.5606 25 1 -3.5124 3.0497 -2.7757 26 6 -1.7970 -2.5123 -3.5346 27 6 -0.7094 -3.4651 -3.0272 28 1 -0.3634 -0.1163 1.0211 29 1 -0.3633 0.9424 -0.4099 30 1 -0.3633 -0.8261 -0.6112 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1326 0.0010 33 1 5.3516 -0.0001 0.0005 34 1 4.1206 -2.1323 0.0111 35 1 1.8103 -4.4409 0.5884 36 1 3.1380 -3.6716 -0.0529 37 1 -1.7765 -3.7317 -0.3904 38 1 -0.8719 -2.3133 0.2014 39 1 -1.9464 -0.8720 -1.4672 40 1 -3.2135 -1.7507 -0.5769 41 1 -4.3463 -2.0977 -3.9972 42 1 -4.8273 -1.6848 -2.3340 43 1 -6.3851 0.9624 -4.3460 44 1 -1.3682 -1.5230 -3.6944 45 1 -2.2019 -2.8896 -4.4737 46 1 0.1415 -3.4453 -3.7081 47 1 -1.1091 -4.4773 -2.9653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601851692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:12 Heat of formation + Delta-G solvation = 12.469676 kcal Electronic energy + Delta-G solvation = -27972.571984 eV Core-core repulsion = 24348.485740 eV Total energy + Delta-G solvation = -3624.086243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78894 -39.07500 -37.66099 -34.97518 -34.54524 -32.92226 -32.36453 -30.85195 -30.41172 -28.43014 -26.97598 -26.14979 -25.21458 -23.25157 -22.61223 -21.83257 -21.15304 -20.29596 -18.64023 -17.71031 -16.89824 -16.36534 -16.20272 -15.72350 -15.43778 -14.88792 -14.85304 -14.64956 -14.55835 -13.98160 -13.92635 -13.65203 -13.55583 -13.21939 -13.02987 -12.82776 -12.55001 -12.25098 -11.95134 -11.89604 -11.70316 -11.23142 -11.13992 -11.09617 -10.97730 -10.92003 -10.76204 -10.66659 -10.45215 -10.25565 -9.96963 -9.73895 -9.08358 -8.74519 -8.54523 -8.51203 -8.47714 -7.33668 -6.11608 -4.21310 1.27558 1.41213 2.58321 3.05524 3.22625 3.28388 3.30874 3.74393 4.22743 4.33385 4.46769 4.61146 4.69297 4.83898 4.93688 5.01015 5.06225 5.18009 5.23156 5.32336 5.38302 5.50514 5.56801 5.61897 5.66254 5.72251 5.77777 5.83716 5.90497 6.00092 6.03110 6.19482 6.31528 6.39679 6.48847 6.53259 6.58307 6.62104 6.64619 6.73695 6.97330 7.05119 7.12418 7.41021 7.46190 7.79316 7.88270 8.10032 8.16167 8.17409 8.87770 9.46414 10.93619 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.004556 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.642785 B = 6144.113311 C = 7527.270986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.122 4.122 4 C -0.116 4.116 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.073 4.073 8 C 0.112 3.888 9 H 0.112 0.888 10 N -0.817 5.817 11 C 0.484 3.516 12 O -0.543 6.543 13 N -0.601 5.601 14 C 0.095 3.905 15 C 0.045 3.955 16 N -0.539 5.539 17 C 0.188 3.812 18 C -0.553 4.553 19 H 0.055 0.945 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.887 3.113 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.050 3.950 27 C 0.112 3.888 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.347 0.653 36 H 0.349 0.651 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -4.743 10.433 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.149 4.149 6 C -0.104 4.104 7 C -0.073 4.073 8 C -0.003 4.003 9 H 0.130 0.870 10 N -0.348 5.348 11 C 0.269 3.731 12 O -0.420 6.420 13 N -0.335 5.335 14 C -0.028 4.028 15 C -0.084 4.084 16 N -0.263 5.263 17 C 0.063 3.937 18 C -0.592 4.592 19 H 0.073 0.927 20 C -0.135 4.135 21 N -0.527 5.527 22 Si 0.714 3.286 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.079 4.079 27 C -0.010 4.010 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.519 -4.785 10.640 18.626 hybrid contribution 0.151 1.549 -1.381 2.081 sum 14.670 -3.235 9.259 17.647 Atomic orbital electron populations 1.21385 0.90961 1.04819 1.02764 1.19792 0.96251 0.92481 0.98631 1.21019 0.94274 0.97388 1.01273 1.21130 0.94291 0.98007 0.99933 1.21071 0.99712 0.92452 1.01682 1.20837 0.93296 0.98121 0.98106 1.19130 0.93766 0.92146 1.02307 1.20541 0.96867 0.91249 0.91616 0.87033 1.59173 1.09878 1.09684 1.56099 1.21712 0.82401 0.77294 0.91710 1.90672 1.51110 1.51764 1.48426 1.48345 1.05464 1.65976 1.13696 1.22387 0.88992 1.00862 0.90527 1.22453 0.96540 0.95750 0.93693 1.62484 1.08130 1.52597 1.03138 1.19763 0.87672 0.90438 0.95810 1.21667 0.96743 0.95600 1.45169 0.92683 1.24927 0.94823 0.98686 0.95054 1.69919 1.03244 1.34999 1.44548 0.86744 0.78183 0.84952 0.78704 1.20262 1.21097 1.20196 1.22237 0.91791 0.98046 0.95855 1.21871 0.97849 0.98113 0.83179 0.90633 0.90843 0.89778 0.85922 0.86207 0.86173 0.85858 0.84042 0.83534 0.90610 0.89655 0.92982 0.90097 0.95017 0.94796 0.92649 0.93954 0.90316 0.89578 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.21 36.00 0.30 -1.59 16 2 C -0.07 -0.98 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.55 9.68 -39.58 -0.38 -1.93 16 4 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 5 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 6 C -0.09 -1.08 9.26 -39.58 -0.37 -1.45 16 7 C -0.07 -0.99 4.93 -104.62 -0.52 -1.50 16 8 C 0.11 1.39 2.60 -70.02 -0.18 1.21 16 9 H 0.11 1.26 4.64 -51.93 -0.24 1.02 16 10 N -0.82 -8.43 8.74 -6.65 -0.06 -8.48 16 11 C 0.48 7.33 6.07 -10.98 -0.07 7.26 16 12 O -0.54 -9.96 16.29 5.56 0.09 -9.87 16 13 N -0.60 -8.92 2.82 -172.18 -0.48 -9.40 16 14 C 0.09 1.26 5.37 -3.36 -0.02 1.24 16 15 C 0.04 0.77 4.84 -3.47 -0.02 0.75 16 16 N -0.54 -10.58 4.83 -235.47 -1.14 -11.72 16 17 C 0.19 4.56 5.11 -4.97 -0.03 4.53 16 18 C -0.55 -14.47 7.76 -34.44 -0.27 -14.73 16 19 H 0.06 1.45 5.86 -52.48 -0.31 1.14 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 C 0.05 0.93 5.24 -3.71 -0.02 0.91 16 27 C 0.11 1.78 6.61 -3.60 -0.02 1.75 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.08 1.19 1.80 -51.93 -0.09 1.10 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.38 6.26 -52.49 -0.33 1.05 16 35 H 0.35 3.00 9.06 -39.29 -0.36 2.64 16 36 H 0.35 3.64 7.17 -39.29 -0.28 3.35 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.95 3.84 -51.93 -0.20 0.75 16 39 H 0.05 0.99 4.99 -51.93 -0.26 0.73 16 40 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 41 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.04 0.90 7.00 -51.93 -0.36 0.53 16 45 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 46 H 0.09 1.41 7.04 -51.93 -0.37 1.05 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -30.70 358.91 -10.13 -40.83 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.57 Total: 8.89 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.10 Total: -7.03 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.94 Total: -54.16 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.70 -10.13 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.298 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds