Wall clock time and date at job start Tue Mar 31 2020 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38255 * 120.00298 * 2 1 4 4 C 1.38213 * 120.00386 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99788 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00299 * 359.70407 * 5 4 3 7 7 C 1.38216 * 119.99846 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00440 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.46983 * 321.90668 * 8 7 2 10 10 N 1.46890 * 109.47575 * 201.90682 * 8 7 2 11 11 C 1.50708 * 109.47106 * 81.90460 * 8 7 2 12 12 O 1.21276 * 119.99625 * 57.86823 * 11 8 7 13 13 N 1.34779 * 119.99798 * 237.86981 * 11 8 7 14 14 C 1.47078 * 120.88337 * 5.26155 * 13 11 8 15 15 C 1.53697 * 108.27641 * 128.75585 * 14 13 11 16 16 N 1.46894 * 109.25570 * 54.08119 * 15 14 13 17 17 C 1.46904 * 111.00008 * 172.60565 * 16 15 14 18 18 C 1.50703 * 109.47002 * 59.32693 * 17 16 15 19 19 H 1.08005 * 119.99795 * 0.80898 * 18 17 16 20 20 C 1.37870 * 119.99911 * 180.81519 * 18 17 16 21 21 N 1.31515 * 120.00578 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99669 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47330 * 60.00094 * 22 20 18 24 24 H 1.48501 * 109.46948 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47504 * 299.99311 * 22 20 18 26 26 C 1.46893 * 111.27200 * 296.75745 * 16 15 14 27 27 C 1.47081 * 120.87791 * 185.54005 * 13 11 8 28 28 H 1.09002 * 109.47392 * 263.50135 * 1 2 3 29 29 H 1.09004 * 109.47022 * 23.50757 * 1 2 3 30 30 H 1.09001 * 109.47062 * 143.50262 * 1 2 3 31 31 H 1.08003 * 119.99868 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.00046 * 180.02562 * 4 3 2 33 33 H 1.08000 * 120.00023 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.00546 * 180.30088 * 6 5 4 35 35 H 1.00901 * 111.00597 * 176.04670 * 10 8 7 36 36 H 1.00906 * 111.00251 * 300.00444 * 10 8 7 37 37 H 1.08997 * 109.62927 * 248.52736 * 14 13 11 38 38 H 1.09000 * 109.62642 * 9.10707 * 14 13 11 39 39 H 1.09001 * 109.64843 * 294.08196 * 15 14 13 40 40 H 1.08995 * 109.42079 * 173.94627 * 15 14 13 41 41 H 1.08998 * 109.46929 * 179.32215 * 17 16 15 42 42 H 1.08996 * 109.47041 * 299.32311 * 17 16 15 43 43 H 0.96998 * 120.00546 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49505 * 303.14469 * 26 16 15 45 45 H 1.09000 * 109.49884 * 183.06534 * 26 16 15 46 46 H 1.09002 * 109.62688 * 350.89623 * 27 13 11 47 47 H 1.08999 * 109.62273 * 111.47632 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 6 3.5806 -1.1970 0.0062 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5622 -2.4123 0.6342 10 7 2.3122 -3.5685 0.5178 11 6 1.0206 -2.8375 -1.4063 12 8 1.8535 -2.9434 -2.2815 13 7 -0.2839 -3.0195 -1.6917 14 6 -1.3194 -2.7838 -0.6741 15 6 -2.3834 -1.8521 -1.2759 16 7 -2.8718 -2.4255 -2.5371 17 6 -4.0121 -1.6590 -3.0571 18 6 -3.5926 -0.2305 -3.2905 19 1 -2.5767 0.0742 -3.0865 20 6 -4.5057 0.6875 -3.7643 21 7 -5.7426 0.3165 -4.0130 22 14 -3.9858 2.4583 -4.0529 23 1 -2.8882 2.4954 -5.0525 24 1 -5.1435 3.2375 -4.5606 25 1 -3.5124 3.0497 -2.7757 26 6 -1.7970 -2.5123 -3.5346 27 6 -0.7094 -3.4651 -3.0272 28 1 -0.3634 -0.1163 1.0211 29 1 -0.3633 0.9424 -0.4099 30 1 -0.3633 -0.8261 -0.6112 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1326 0.0010 33 1 5.3516 -0.0001 0.0005 34 1 4.1206 -2.1323 0.0111 35 1 1.8103 -4.4409 0.5884 36 1 3.1380 -3.6716 -0.0529 37 1 -1.7765 -3.7317 -0.3904 38 1 -0.8719 -2.3133 0.2014 39 1 -1.9464 -0.8720 -1.4672 40 1 -3.2135 -1.7507 -0.5769 41 1 -4.3463 -2.0977 -3.9972 42 1 -4.8273 -1.6848 -2.3340 43 1 -6.3851 0.9624 -4.3460 44 1 -1.3682 -1.5230 -3.6944 45 1 -2.2019 -2.8896 -4.4737 46 1 0.1415 -3.4453 -3.7081 47 1 -1.1091 -4.4773 -2.9653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601851692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:11 Heat of formation + Delta-G solvation = -8.775262 kcal Electronic energy + Delta-G solvation = -27973.493233 eV Core-core repulsion = 24348.485740 eV Total energy + Delta-G solvation = -3625.007493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91518 -40.14796 -39.06450 -36.18205 -35.86351 -34.33145 -33.86215 -32.16082 -31.30544 -30.03711 -28.07490 -27.41669 -26.69086 -24.58690 -24.21782 -22.94160 -22.23292 -21.60956 -19.92788 -18.85647 -18.40410 -17.79726 -17.26349 -16.92971 -16.75477 -16.38612 -16.10864 -15.77741 -15.66524 -15.55409 -15.15536 -15.06390 -14.62059 -14.49282 -14.23068 -13.93781 -13.86129 -13.56716 -13.25681 -13.10747 -12.97742 -12.90127 -12.82018 -12.52956 -12.46648 -12.25916 -11.98871 -11.91576 -11.84831 -11.79908 -11.70973 -11.41798 -10.62366 -10.00713 -9.83037 -9.69162 -9.45567 -9.05933 -8.18333 -6.36868 0.33282 0.47469 1.33442 1.34999 1.41421 1.42323 1.89061 2.33966 2.79870 3.07562 3.24257 3.35790 3.40944 3.67940 3.82718 3.94898 3.98356 4.04003 4.07554 4.19033 4.31461 4.34938 4.38061 4.47790 4.56703 4.64973 4.67706 4.71545 4.79433 4.84629 4.89888 5.01811 5.10807 5.12336 5.18666 5.30254 5.31522 5.38763 5.50988 5.58614 5.63803 5.71837 5.86415 5.97540 6.08174 6.14082 6.25910 6.36139 6.42862 6.82630 6.97804 7.34647 8.83933 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.004556 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.642785 B = 6144.113311 C = 7527.270986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.118 4.118 5 C -0.135 4.135 6 C -0.098 4.098 7 C -0.091 4.091 8 C 0.122 3.878 9 H 0.125 0.875 10 N -0.808 5.808 11 C 0.484 3.516 12 O -0.578 6.578 13 N -0.603 5.603 14 C 0.105 3.895 15 C 0.043 3.957 16 N -0.533 5.533 17 C 0.202 3.798 18 C -0.555 4.555 19 H 0.051 0.949 20 C 0.019 3.981 21 N -0.922 5.922 22 Si 0.946 3.054 23 H -0.278 1.278 24 H -0.280 1.280 25 H -0.267 1.267 26 C 0.056 3.944 27 C 0.122 3.878 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.358 0.642 36 H 0.350 0.650 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.032 0.968 40 H 0.084 0.916 41 H 0.005 0.995 42 H 0.015 0.985 43 H 0.265 0.735 44 H 0.011 0.989 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.033 -4.757 12.055 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.136 4.136 5 C -0.153 4.153 6 C -0.116 4.116 7 C -0.092 4.092 8 C 0.007 3.993 9 H 0.142 0.858 10 N -0.340 5.340 11 C 0.271 3.729 12 O -0.457 6.457 13 N -0.336 5.336 14 C -0.016 4.016 15 C -0.086 4.086 16 N -0.257 5.257 17 C 0.075 3.925 18 C -0.594 4.594 19 H 0.069 0.931 20 C -0.181 4.181 21 N -0.561 5.561 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.206 1.206 25 H -0.192 1.192 26 C -0.074 4.074 27 C -0.001 4.001 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.024 0.976 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.029 0.971 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.178 -4.814 12.293 20.881 hybrid contribution -0.317 1.551 -1.890 2.466 sum 15.860 -3.263 10.403 19.246 Atomic orbital electron populations 1.21359 0.91031 1.03645 1.03684 1.19963 0.96470 0.93108 0.99509 1.21275 0.95145 0.97566 1.01562 1.21470 0.94025 0.99228 0.98894 1.21436 1.01137 0.92063 1.00666 1.21113 0.93253 0.99173 0.98065 1.19320 0.94401 0.92426 1.03071 1.20493 0.97504 0.91540 0.89716 0.85751 1.59178 1.09614 1.09921 1.55324 1.22297 0.81868 0.76169 0.92597 1.90653 1.51994 1.53242 1.49792 1.48423 1.05956 1.65713 1.13465 1.22414 0.87609 1.01200 0.90404 1.22533 0.97711 0.95855 0.92474 1.62415 1.07538 1.51590 1.04122 1.19423 0.88906 0.90024 0.94144 1.21883 0.96410 0.96611 1.44454 0.93127 1.25669 0.94855 1.02539 0.95006 1.70025 1.04212 1.36291 1.45592 0.85799 0.77758 0.80526 0.78787 1.20376 1.20562 1.19182 1.22186 0.92082 0.97219 0.95878 1.21694 0.96414 0.98108 0.83844 0.88552 0.92024 0.90958 0.85101 0.83785 0.83658 0.84800 0.82778 0.83462 0.88328 0.87025 0.94949 0.89757 0.97639 0.96684 0.92554 0.97077 0.90790 0.90181 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.21 71.23 0.58 -2.98 16 2 C -0.09 -2.37 5.88 -19.87 -0.12 -2.48 16 3 C -0.14 -3.33 9.68 22.27 0.22 -3.12 16 4 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 5 C -0.14 -2.83 10.05 22.27 0.22 -2.60 16 6 C -0.10 -2.30 9.26 22.27 0.21 -2.10 16 7 C -0.09 -2.34 4.93 -19.86 -0.10 -2.44 16 8 C 0.12 2.78 2.60 43.43 0.11 2.90 16 9 H 0.13 2.44 4.64 -2.39 -0.01 2.43 16 10 N -0.81 -14.73 8.74 -174.96 -1.53 -16.26 16 11 C 0.48 13.98 6.07 87.66 0.53 14.52 16 12 O -0.58 -20.76 16.29 -3.02 -0.05 -20.81 16 13 N -0.60 -16.99 2.82 -817.05 -2.30 -19.30 16 14 C 0.11 2.57 5.37 86.50 0.46 3.04 16 15 C 0.04 1.45 4.84 86.54 0.42 1.86 16 16 N -0.53 -21.04 4.83 -898.91 -4.34 -25.38 16 17 C 0.20 10.03 5.11 85.56 0.44 10.47 16 18 C -0.55 -29.63 7.76 25.60 0.20 -29.44 16 19 H 0.05 2.71 5.86 -2.91 -0.02 2.70 16 20 C 0.02 1.06 5.46 84.65 0.46 1.53 16 21 N -0.92 -53.35 13.29 21.44 0.28 -53.06 16 22 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.06 2.11 5.24 86.38 0.45 2.56 16 27 C 0.12 3.77 6.61 86.35 0.57 4.34 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.66 8.04 -2.38 -0.02 1.65 16 30 H 0.07 1.98 1.80 -2.39 0.00 1.97 16 31 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.13 2.75 6.26 -2.91 -0.02 2.73 16 35 H 0.36 5.19 9.06 -89.69 -0.81 4.38 16 36 H 0.35 6.57 7.17 -89.69 -0.64 5.92 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.11 2.17 3.84 -2.39 -0.01 2.16 16 39 H 0.03 1.23 4.99 -2.39 -0.01 1.22 16 40 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 41 H 0.01 0.30 8.07 -2.39 -0.02 0.28 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.01 0.48 7.00 -2.39 -0.02 0.46 16 45 H 0.07 2.82 8.05 -2.39 -0.02 2.80 16 46 H 0.08 2.60 7.04 -2.39 -0.02 2.59 16 47 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.95 358.91 -1.45 -68.41 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.44 Total: 27.30 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.89 Total: -6.22 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -7.88 Total: -114.00 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.95 -1.45 -68.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601851692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.631 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds