Wall clock time and date at job start Tue Mar 31 2020 11:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88261 * 359.72571 * 13 11 10 15 15 C 1.53695 * 108.27576 * 128.74910 * 14 13 11 16 16 N 1.46904 * 109.25420 * 54.08473 * 15 14 13 17 17 C 1.46897 * 110.99901 * 172.60509 * 16 15 14 18 18 C 1.53001 * 109.47421 * 294.30247 * 17 16 15 19 19 C 1.50692 * 109.47517 * 180.02562 * 18 17 16 20 20 C 1.38654 * 120.78713 * 269.72010 * 19 18 17 21 21 C 1.38207 * 119.16154 * 179.79894 * 20 19 18 22 22 N 1.31870 * 120.76132 * 0.48155 * 21 20 19 23 23 C 1.31864 * 121.73102 * 359.74563 * 22 21 20 24 24 C 1.38207 * 120.76505 * 0.02562 * 23 22 21 25 25 C 1.46897 * 111.26792 * 296.75440 * 16 15 14 26 26 C 1.47075 * 120.87669 * 180.02562 * 13 11 10 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08994 * 109.63016 * 248.52290 * 14 13 11 33 33 H 1.09001 * 109.62513 * 9.10199 * 14 13 11 34 34 H 1.08997 * 109.65385 * 294.08176 * 15 14 13 35 35 H 1.08999 * 109.42153 * 173.94686 * 15 14 13 36 36 H 1.08994 * 109.47420 * 54.30050 * 17 16 15 37 37 H 1.08997 * 109.47407 * 174.29955 * 17 16 15 38 38 H 1.09003 * 109.47141 * 299.99958 * 18 17 16 39 39 H 1.08997 * 109.47068 * 59.99501 * 18 17 16 40 40 H 1.07995 * 120.42355 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.62043 * 180.20331 * 21 20 19 42 42 H 1.08006 * 119.62449 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.42644 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.49120 * 303.14081 * 25 16 15 45 45 H 1.09003 * 109.48945 * 183.06528 * 25 16 15 46 46 H 1.09003 * 109.63301 * 350.89825 * 26 13 11 47 47 H 1.09003 * 109.62726 * 111.48107 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 8 6.1350 -1.5861 0.0018 13 7 6.2026 -3.8036 0.0037 14 6 5.4869 -5.0885 0.0114 15 6 6.0456 -5.9582 -1.1260 16 7 7.5045 -6.0596 -0.9864 17 6 8.0596 -7.0222 -1.9472 18 6 7.5558 -8.4271 -1.6106 19 6 8.1257 -9.4147 -2.5958 20 6 7.4507 -9.7172 -3.7686 21 6 8.0063 -10.6248 -4.6505 22 7 9.1588 -11.2069 -4.3823 23 6 9.8260 -10.9470 -3.2751 24 6 9.3347 -10.0468 -2.3485 25 6 8.1459 -4.7456 -1.1274 26 6 7.6731 -3.8262 0.0042 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 5.6411 -5.5878 0.9679 33 1 4.4224 -4.9156 -0.1472 34 1 5.8029 -5.5051 -2.0871 35 1 5.6050 -6.9537 -1.0710 36 1 7.7421 -6.7541 -2.9548 37 1 9.1481 -7.0038 -1.8924 38 1 7.8733 -8.6953 -0.6030 39 1 6.4673 -8.4456 -1.6654 40 1 6.5042 -9.2475 -3.9915 41 1 7.4884 -10.8634 -5.5677 42 1 10.7669 -11.4438 -3.0896 43 1 9.8856 -9.8383 -1.4433 44 1 7.8739 -4.3094 -2.0886 45 1 9.2284 -4.8616 -1.0735 46 1 8.0549 -2.8183 -0.1591 47 1 8.0331 -4.2067 0.9601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602201280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:53 Heat of formation + Delta-G solvation = 0.719945 kcal Electronic energy + Delta-G solvation = -25628.341104 eV Core-core repulsion = 22003.745354 eV Total energy + Delta-G solvation = -3624.595750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63183 -40.03111 -38.22375 -35.55044 -33.82567 -33.55405 -31.79032 -31.60933 -30.89982 -29.92882 -27.32254 -25.80840 -24.03025 -23.84012 -23.59624 -21.94419 -21.31269 -20.43437 -18.62826 -17.40961 -17.07867 -16.84142 -16.37395 -16.01315 -15.63625 -15.47643 -15.40557 -15.17880 -14.91444 -14.28833 -14.20006 -14.08394 -13.94874 -13.41247 -13.33825 -12.88400 -12.73434 -12.54367 -12.35053 -12.18864 -12.10327 -11.68327 -11.53989 -11.41395 -11.30474 -11.02088 -10.97952 -10.15304 -10.04748 -9.95217 -9.87883 -9.79667 -9.57445 -9.25421 -9.16256 -8.87668 -8.52626 -8.41876 -6.04517 -4.03277 0.71731 0.81191 3.04351 3.10043 3.35914 3.36666 3.43386 3.54164 3.54452 4.06114 4.26695 4.29349 4.49663 4.55280 4.63146 4.65265 4.71857 4.75900 4.79931 5.02347 5.05805 5.07191 5.16563 5.22986 5.26769 5.30979 5.32227 5.37886 5.41543 5.49313 5.55012 5.66601 5.68332 5.75887 5.89432 5.95413 6.01439 6.06001 6.28892 6.54660 6.61468 6.67179 6.72526 7.34516 7.41613 7.56707 7.61056 7.77839 8.47190 8.59233 8.98149 9.58616 11.08214 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002101 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.736433 B =13324.122061 C =13967.475711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.541 6.541 13 N -0.626 5.626 14 C 0.113 3.887 15 C 0.036 3.964 16 N -0.537 5.537 17 C 0.063 3.937 18 C -0.082 4.082 19 C -0.035 4.035 20 C -0.170 4.170 21 C 0.099 3.901 22 N -0.491 5.491 23 C 0.098 3.902 24 C -0.169 4.169 25 C 0.044 3.956 26 C 0.116 3.884 27 H 0.263 0.737 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.317 -22.693 -4.631 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.417 6.417 13 N -0.362 5.362 14 C -0.010 4.010 15 C -0.093 4.093 16 N -0.262 5.262 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.057 4.057 22 N -0.201 5.201 23 C -0.058 4.058 24 C -0.189 4.189 25 C -0.085 4.085 26 C -0.007 4.007 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.153 0.847 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.112 0.888 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.919 -22.739 -4.753 30.601 hybrid contribution -0.174 1.618 -0.286 1.653 sum 19.745 -21.121 -5.039 29.349 Atomic orbital electron populations 1.69909 1.06271 1.26976 1.51037 1.24972 0.94716 0.99231 0.94330 0.86800 0.80641 0.83410 0.78736 1.20268 1.21416 1.18531 1.21100 0.89234 0.94549 1.51373 0.90936 1.19377 0.96435 0.90198 0.97644 1.21683 0.88041 1.03232 1.03062 1.21571 0.91613 0.82304 0.74160 1.90640 1.70715 1.31027 1.49278 1.48326 1.06245 1.06291 1.75349 1.21899 0.97201 0.83334 0.98592 1.22684 0.87875 1.00575 0.98169 1.61937 1.04598 1.08670 1.51011 1.22022 0.99937 0.90834 0.93681 1.20679 1.01063 0.92108 0.98055 1.20314 0.93986 0.95247 0.94845 1.22118 1.01734 1.00086 0.95083 1.22790 0.91644 0.92463 0.98832 1.67682 1.07935 1.24546 1.19893 1.22788 0.98972 0.94767 0.89319 1.22104 0.96735 0.98620 1.01465 1.22496 0.99177 0.88612 0.98203 1.21581 0.80745 1.00330 0.98046 0.92712 0.95814 0.96349 0.89770 0.89566 0.90718 0.88499 0.93990 0.89340 0.94542 0.90478 0.89370 0.90152 0.84774 0.82759 0.82792 0.84668 0.94256 0.89758 0.88787 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.33 4.00 -27.88 -0.11 -2.44 16 11 C 0.51 9.47 7.71 -10.98 -0.08 9.38 16 12 O -0.54 -12.04 15.43 5.56 0.09 -11.95 16 13 N -0.63 -8.74 3.00 -172.16 -0.52 -9.25 16 14 C 0.11 1.20 6.53 -3.37 -0.02 1.18 16 15 C 0.04 0.31 5.48 -3.46 -0.02 0.29 16 16 N -0.54 -4.60 4.63 -234.00 -1.08 -5.68 16 17 C 0.06 0.44 4.94 -3.82 -0.02 0.42 16 18 C -0.08 -0.48 5.32 -27.89 -0.15 -0.63 16 19 C -0.04 -0.23 5.17 -104.32 -0.54 -0.77 16 20 C -0.17 -1.13 9.82 -39.44 -0.39 -1.52 16 21 C 0.10 0.74 11.18 -17.55 -0.20 0.54 16 22 N -0.49 -4.41 10.36 -13.25 -0.14 -4.55 16 23 C 0.10 0.70 11.18 -17.55 -0.20 0.50 16 24 C -0.17 -1.06 9.82 -39.44 -0.39 -1.45 16 25 C 0.04 0.42 5.62 -3.68 -0.02 0.40 16 26 C 0.12 1.39 6.60 -3.58 -0.02 1.36 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 29 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 30 H 0.08 1.50 7.67 -51.93 -0.40 1.10 16 31 H 0.09 1.54 7.99 -51.93 -0.41 1.12 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.01 6.02 -51.93 -0.31 0.70 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.60 6.16 -51.93 -0.32 0.28 16 36 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 37 H 0.08 0.51 7.97 -51.93 -0.41 0.10 16 38 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.08 0.45 6.36 -51.93 -0.33 0.12 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.66 7.99 -51.93 -0.41 0.24 16 46 H 0.09 1.27 7.06 -51.93 -0.37 0.91 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -35.17 376.67 -10.09 -45.27 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.54 Total: -4.22 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.68 Total: -6.11 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.96 Total: -46.58 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.17 -10.09 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.988 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds