Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88261 * 359.72571 * 13 11 10 15 15 C 1.53695 * 108.27576 * 128.74910 * 14 13 11 16 16 N 1.46904 * 109.25420 * 54.08473 * 15 14 13 17 17 C 1.46897 * 110.99901 * 172.60509 * 16 15 14 18 18 C 1.53001 * 109.47421 * 294.30247 * 17 16 15 19 19 C 1.50692 * 109.47517 * 180.02562 * 18 17 16 20 20 C 1.38654 * 120.78713 * 269.72010 * 19 18 17 21 21 C 1.38207 * 119.16154 * 179.79894 * 20 19 18 22 22 N 1.31870 * 120.76132 * 0.48155 * 21 20 19 23 23 C 1.31864 * 121.73102 * 359.74563 * 22 21 20 24 24 C 1.38207 * 120.76505 * 0.02562 * 23 22 21 25 25 C 1.46897 * 111.26792 * 296.75440 * 16 15 14 26 26 C 1.47075 * 120.87669 * 180.02562 * 13 11 10 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08994 * 109.63016 * 248.52290 * 14 13 11 33 33 H 1.09001 * 109.62513 * 9.10199 * 14 13 11 34 34 H 1.08997 * 109.65385 * 294.08176 * 15 14 13 35 35 H 1.08999 * 109.42153 * 173.94686 * 15 14 13 36 36 H 1.08994 * 109.47420 * 54.30050 * 17 16 15 37 37 H 1.08997 * 109.47407 * 174.29955 * 17 16 15 38 38 H 1.09003 * 109.47141 * 299.99958 * 18 17 16 39 39 H 1.08997 * 109.47068 * 59.99501 * 18 17 16 40 40 H 1.07995 * 120.42355 * 359.97438 * 20 19 18 41 41 H 1.08002 * 119.62043 * 180.20331 * 21 20 19 42 42 H 1.08006 * 119.62449 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.42644 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.49120 * 303.14081 * 25 16 15 45 45 H 1.09003 * 109.48945 * 183.06528 * 25 16 15 46 46 H 1.09003 * 109.63301 * 350.89825 * 26 13 11 47 47 H 1.09003 * 109.62726 * 111.48107 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5287 -2.6364 0.0022 12 8 6.1350 -1.5861 0.0018 13 7 6.2026 -3.8036 0.0037 14 6 5.4869 -5.0885 0.0114 15 6 6.0456 -5.9582 -1.1260 16 7 7.5045 -6.0596 -0.9864 17 6 8.0596 -7.0222 -1.9472 18 6 7.5558 -8.4271 -1.6106 19 6 8.1257 -9.4147 -2.5958 20 6 7.4507 -9.7172 -3.7686 21 6 8.0063 -10.6248 -4.6505 22 7 9.1588 -11.2069 -4.3823 23 6 9.8260 -10.9470 -3.2751 24 6 9.3347 -10.0468 -2.3485 25 6 8.1459 -4.7456 -1.1274 26 6 7.6731 -3.8262 0.0042 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 5.6411 -5.5878 0.9679 33 1 4.4224 -4.9156 -0.1472 34 1 5.8029 -5.5051 -2.0871 35 1 5.6050 -6.9537 -1.0710 36 1 7.7421 -6.7541 -2.9548 37 1 9.1481 -7.0038 -1.8924 38 1 7.8733 -8.6953 -0.6030 39 1 6.4673 -8.4456 -1.6654 40 1 6.5042 -9.2475 -3.9915 41 1 7.4884 -10.8634 -5.5677 42 1 10.7669 -11.4438 -3.0896 43 1 9.8856 -9.8383 -1.4433 44 1 7.8739 -4.3094 -2.0886 45 1 9.2284 -4.8616 -1.0735 46 1 8.0549 -2.8183 -0.1591 47 1 8.0331 -4.2067 0.9601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602201280.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -22.576716 kcal Electronic energy + Delta-G solvation = -25629.351323 eV Core-core repulsion = 22003.745354 eV Total energy + Delta-G solvation = -3625.605969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.30384 -41.00488 -39.24507 -36.41663 -35.60133 -34.58075 -33.43741 -32.12438 -32.06676 -30.62903 -28.60141 -27.18656 -24.85269 -24.39635 -24.33819 -23.27439 -22.06979 -21.64771 -19.88390 -19.13968 -18.00032 -17.53608 -17.35432 -16.80665 -16.73371 -16.51387 -16.29329 -16.15766 -15.92706 -15.59297 -15.19154 -14.88304 -14.75722 -14.61997 -14.55583 -14.27607 -13.84453 -13.51279 -13.35636 -13.23694 -12.99621 -12.90984 -12.65558 -12.42456 -12.26490 -12.19297 -12.01051 -11.98707 -11.78190 -11.61876 -11.39641 -10.78871 -10.71789 -10.47008 -10.39284 -10.05034 -9.81042 -9.31611 -8.32207 -6.34842 0.24372 0.31908 1.31804 1.34113 1.49085 1.63051 1.99171 2.34050 2.74963 2.94515 3.03322 3.61937 3.63673 3.76933 3.85762 3.93362 3.97515 4.06972 4.20466 4.23613 4.27036 4.29273 4.33633 4.40519 4.44044 4.46790 4.54158 4.60615 4.73637 4.76538 4.81464 4.85007 4.87233 4.97346 4.99454 5.07870 5.08042 5.19963 5.30793 5.41905 5.48354 5.55046 5.59527 5.83396 5.95550 5.98817 6.22531 6.38781 6.71141 7.07429 7.19603 7.30499 8.83203 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002101 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.736433 B =13324.122061 C =13967.475711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.113 4.113 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.616 5.616 14 C 0.106 3.894 15 C 0.039 3.961 16 N -0.535 5.535 17 C 0.067 3.933 18 C -0.072 4.072 19 C -0.042 4.042 20 C -0.175 4.175 21 C 0.083 3.917 22 N -0.523 5.523 23 C 0.084 3.916 24 C -0.169 4.169 25 C 0.051 3.949 26 C 0.113 3.887 27 H 0.267 0.733 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.115 0.885 36 H 0.030 0.970 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.156 0.844 44 H 0.024 0.976 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.690 -24.056 -4.303 32.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.033 4.033 10 C -0.152 4.152 11 C 0.303 3.697 12 O -0.469 6.469 13 N -0.350 5.350 14 C -0.017 4.017 15 C -0.089 4.089 16 N -0.260 5.260 17 C -0.060 4.060 18 C -0.109 4.109 19 C -0.050 4.050 20 C -0.195 4.195 21 C -0.073 4.073 22 N -0.233 5.233 23 C -0.072 4.072 24 C -0.189 4.189 25 C -0.077 4.077 26 C -0.009 4.009 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.133 0.867 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.166 0.834 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.173 0.827 44 H 0.043 0.957 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.304 -24.169 -4.429 32.521 hybrid contribution -0.596 1.908 -0.383 2.036 sum 20.708 -22.260 -4.813 30.781 Atomic orbital electron populations 1.70014 1.07669 1.28067 1.52454 1.25782 0.95500 1.02748 0.94334 0.85861 0.79240 0.79709 0.79099 1.19446 1.20265 1.18740 1.21406 0.91072 0.93777 1.50276 0.92911 1.19224 0.94085 0.93737 0.96213 1.21492 0.89236 0.99823 1.04679 1.21271 0.91135 0.82988 0.74306 1.90620 1.71292 1.32957 1.52014 1.48330 1.07376 1.06168 1.73115 1.22201 0.97152 0.81930 1.00377 1.22681 0.88207 1.01395 0.96631 1.61959 1.04361 1.08166 1.51507 1.22018 1.00270 0.90879 0.92859 1.20598 1.01284 0.91000 0.98046 1.20473 0.94170 0.95445 0.94941 1.22316 1.02284 0.99838 0.95023 1.23098 0.91629 0.92813 0.99736 1.67676 1.08876 1.25663 1.21065 1.23167 0.99659 0.95226 0.89155 1.22340 0.96703 0.97955 1.01875 1.22409 1.00484 0.88606 0.96220 1.21727 0.79211 1.00101 0.99872 0.92372 0.97311 0.97559 0.88165 0.87960 0.88944 0.88376 0.95162 0.86691 0.95207 0.89848 0.88732 0.89596 0.83392 0.81475 0.81094 0.82668 0.95750 0.87527 0.90807 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.96 21.45 0.30 -58.36 16 2 C 0.01 0.84 5.47 84.65 0.46 1.31 16 3 Si 0.94 46.87 27.47 68.60 1.88 48.76 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -13.16 6.54 99.48 0.65 -12.51 16 7 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 9 C 0.01 0.27 3.33 29.85 0.10 0.37 16 10 C -0.11 -4.27 4.00 29.85 0.12 -4.15 16 11 C 0.51 18.62 7.71 87.66 0.68 19.30 16 12 O -0.59 -26.44 15.43 -3.03 -0.05 -26.49 16 13 N -0.62 -16.22 3.00 -816.99 -2.45 -18.67 16 14 C 0.11 1.95 6.53 86.50 0.57 2.51 16 15 C 0.04 0.57 5.48 86.54 0.47 1.05 16 16 N -0.54 -7.48 4.63 -894.25 -4.14 -11.62 16 17 C 0.07 0.73 4.94 86.30 0.43 1.16 16 18 C -0.07 -0.61 5.32 29.85 0.16 -0.45 16 19 C -0.04 -0.45 5.17 -19.67 -0.10 -0.55 16 20 C -0.17 -2.03 9.82 22.36 0.22 -1.81 16 21 C 0.08 1.16 11.18 84.68 0.95 2.11 16 22 N -0.52 -9.01 10.36 -195.84 -2.03 -11.03 16 23 C 0.08 1.09 11.18 84.68 0.95 2.04 16 24 C -0.17 -1.74 9.82 22.36 0.22 -1.53 16 25 C 0.05 0.87 5.62 86.40 0.49 1.35 16 26 C 0.11 2.53 6.60 86.36 0.57 3.10 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 29 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 30 H 0.10 3.45 7.67 -2.39 -0.02 3.43 16 31 H 0.10 3.52 7.99 -2.39 -0.02 3.50 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.81 6.02 -2.39 -0.01 1.79 16 34 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.12 1.11 6.16 -2.39 -0.01 1.10 16 36 H 0.03 0.38 8.12 -2.39 -0.02 0.36 16 37 H 0.08 0.83 7.97 -2.39 -0.02 0.81 16 38 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 39 H 0.09 0.65 6.36 -2.39 -0.02 0.63 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 42 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16 46 H 0.07 1.98 7.06 -2.39 -0.02 1.96 16 47 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.67 376.67 0.92 -75.75 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.89 Total: 5.90 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 6.52 Total: -4.24 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -8.32 Total: -99.68 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.76 kcal Total: -76.67 0.92 -75.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201280.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.174 kcal (2) G-P(sol) polarization free energy of solvation -76.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds