Wall clock time and date at job start Tue Mar 31 2020 11:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33010 * 119.99803 * 2 1 4 4 C 1.50697 * 120.00277 * 354.60980 * 3 2 1 5 5 C 1.53000 * 109.47424 * 245.01910 * 4 3 2 6 6 C 1.52999 * 109.47282 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46975 * 59.99827 * 6 5 4 8 8 C 1.52999 * 109.46975 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47256 * 300.00188 * 7 6 5 10 10 C 1.52998 * 109.46965 * 125.01657 * 4 3 2 11 11 C 1.47072 * 120.00273 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00544 * 179.97438 * 11 2 1 13 13 N 1.34778 * 119.99791 * 359.97438 * 11 2 1 14 14 C 1.40515 * 120.00128 * 179.97438 * 13 11 2 15 15 C 1.40668 * 126.08415 * 359.97425 * 14 13 11 16 16 N 1.30906 * 108.38676 * 179.77570 * 15 14 13 17 17 N 1.40074 * 108.41242 * 0.38099 * 16 15 14 18 18 C 1.37311 * 126.06761 * 179.87573 * 17 16 15 19 19 H 1.07993 * 120.00068 * 174.54945 * 18 17 16 20 20 C 1.38996 * 120.00092 * 354.82475 * 18 17 16 21 21 N 1.31297 * 119.99533 * 4.85597 * 20 18 17 22 22 Si 1.86794 * 120.00216 * 184.85682 * 20 18 17 23 23 H 1.48496 * 109.47142 * 94.99645 * 22 20 18 24 24 H 1.48496 * 109.47238 * 214.99830 * 22 20 18 25 25 H 1.48499 * 109.47204 * 334.99618 * 22 20 18 26 26 C 1.35702 * 126.08696 * 179.97438 * 14 13 11 27 27 H 1.08994 * 109.46966 * 185.19888 * 1 2 3 28 28 H 1.08996 * 109.47106 * 305.19355 * 1 2 3 29 29 H 1.08997 * 109.47095 * 65.19454 * 1 2 3 30 30 H 1.08002 * 119.99810 * 174.61475 * 3 2 1 31 31 H 1.09001 * 109.47038 * 5.01977 * 4 3 2 32 32 H 1.09001 * 109.47067 * 300.00049 * 5 4 3 33 33 H 1.09000 * 109.46758 * 59.99796 * 5 4 3 34 34 H 1.09001 * 109.47170 * 300.00060 * 6 5 4 35 35 H 1.08997 * 109.47065 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46981 * 60.00117 * 7 6 5 37 37 H 1.09000 * 109.47330 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.46935 * 299.99972 * 8 7 6 39 39 H 1.09001 * 109.47170 * 60.00233 * 8 7 6 40 40 H 1.09001 * 109.47067 * 299.99876 * 9 7 6 41 41 H 1.09000 * 109.46758 * 180.02562 * 9 7 6 42 42 H 1.09002 * 109.47266 * 299.99937 * 10 4 3 43 43 H 1.09001 * 109.46981 * 60.00285 * 10 4 3 44 44 H 0.97000 * 120.00075 * 359.97438 * 13 11 2 45 45 H 1.08002 * 125.81008 * 0.02562 * 15 14 13 46 46 H 0.97005 * 119.99478 * 179.97438 * 21 20 18 47 47 H 1.07998 * 126.24967 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4235 2.4541 -0.1226 5 6 1.8030 3.1387 -1.4372 6 6 1.0426 4.4605 -1.5619 7 6 1.4079 5.3717 -0.3884 8 6 0.6479 6.6937 -0.5135 9 6 1.0284 4.6871 0.9262 10 6 1.7894 3.3650 1.0510 11 6 2.2424 -1.2736 -0.0006 12 8 3.4588 -1.2737 -0.0010 13 7 1.5685 -2.4409 -0.0006 14 6 2.2711 -3.6578 -0.0017 15 6 3.6699 -3.8069 -0.0033 16 7 3.9488 -5.0859 0.0009 17 7 2.7445 -5.8013 -0.0034 18 6 2.6165 -7.1685 -0.0033 19 1 1.6388 -7.6192 0.0820 20 6 3.7456 -7.9723 -0.1073 21 7 4.9406 -7.4284 -0.1095 22 14 3.5630 -9.8262 -0.2439 23 1 3.5844 -10.2216 -1.6751 24 1 4.6848 -10.4881 0.4693 25 1 2.2745 -10.2430 0.3655 26 6 1.7210 -4.8983 -0.0013 27 1 -0.3633 -1.0234 0.0931 28 1 -0.3633 0.5923 0.8398 29 1 -0.3633 0.4311 -0.9328 30 1 3.2485 1.1540 0.0878 31 1 0.3511 2.2593 -0.1107 32 1 2.8754 3.3335 -1.4491 33 1 1.5423 2.4897 -2.2732 34 1 -0.0298 4.2653 -1.5503 35 1 1.3126 4.9480 -2.4987 36 1 2.4802 5.5669 -0.4001 37 1 0.9085 7.3431 0.3223 38 1 0.9188 7.1812 -1.4500 39 1 -0.4244 6.4989 -0.5021 40 1 -0.0439 4.4919 0.9379 41 1 1.2883 5.3365 1.7622 42 1 1.5190 2.8773 1.9875 43 1 2.8618 3.5598 1.0391 44 1 0.5985 -2.4409 0.0002 45 1 4.3911 -3.0029 -0.0036 46 1 5.7287 -7.9894 -0.1816 47 1 0.6660 -5.1290 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865056253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:34 Heat of formation + Delta-G solvation = 11.295483 kcal Electronic energy + Delta-G solvation = -25675.622120 eV Core-core repulsion = 22051.484960 eV Total energy + Delta-G solvation = -3624.137160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76188 -40.56474 -39.73185 -36.27682 -35.97120 -35.00436 -32.92469 -32.19701 -31.61822 -29.72889 -28.43331 -27.09638 -26.51166 -24.01405 -23.49264 -22.83300 -21.84569 -21.22916 -20.61367 -19.67381 -19.04466 -17.94742 -17.40488 -16.94835 -16.24917 -16.15307 -15.81593 -15.26545 -15.18840 -15.08287 -15.07309 -14.91944 -14.79008 -14.38544 -13.76444 -13.58289 -13.50633 -13.32883 -13.04121 -13.03497 -12.96614 -12.85599 -12.74026 -12.47968 -12.40372 -12.06859 -11.95502 -11.86924 -11.58148 -11.33243 -11.05319 -11.03455 -10.95170 -10.84024 -10.63677 -10.12447 -9.91906 -8.53217 -8.48383 -6.25568 0.37395 1.28745 1.39382 1.58086 1.72593 2.05087 2.09318 2.32154 2.66152 2.91279 3.07521 3.65119 3.81906 3.87303 3.99244 4.06003 4.22968 4.35122 4.35788 4.41986 4.51495 4.59113 4.60674 4.66924 4.70108 4.72752 4.86426 4.88861 4.95808 4.99553 5.05504 5.07407 5.12112 5.14943 5.22032 5.26241 5.28075 5.31447 5.33994 5.45973 5.47395 5.52805 5.54348 5.67971 5.69531 5.95051 6.30236 6.71886 6.76137 7.38609 7.45888 7.66139 8.51335 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.002005 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.283921 B =13965.199170 C =14163.821073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.182 4.182 3 C -0.064 4.064 4 C -0.056 4.056 5 C -0.111 4.111 6 C -0.108 4.108 7 C -0.095 4.095 8 C -0.145 4.145 9 C -0.108 4.108 10 C -0.112 4.112 11 C 0.528 3.472 12 O -0.588 6.588 13 N -0.611 5.611 14 C -0.047 4.047 15 C -0.061 4.061 16 N -0.311 5.311 17 N -0.167 5.167 18 C -0.354 4.354 19 H 0.143 0.857 20 C -0.008 4.008 21 N -0.825 5.825 22 Si 1.022 2.978 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.241 1.241 26 C -0.080 4.080 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.418 0.582 45 H 0.164 0.836 46 H 0.277 0.723 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 22.488 -0.516 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C -0.084 4.084 4 C -0.074 4.074 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.114 4.114 8 C -0.203 4.203 9 C -0.146 4.146 10 C -0.150 4.150 11 C 0.319 3.681 12 O -0.471 6.471 13 N -0.257 5.257 14 C -0.153 4.153 15 C -0.236 4.236 16 N -0.143 5.143 17 N 0.064 4.936 18 C -0.485 4.485 19 H 0.160 0.840 20 C -0.220 4.220 21 N -0.453 5.453 22 Si 0.840 3.160 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.164 1.164 26 C -0.230 4.230 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.257 0.743 45 H 0.181 0.819 46 H 0.086 0.914 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.009 21.565 -0.514 25.191 hybrid contribution -0.127 -0.327 -0.022 0.351 sum -13.137 21.239 -0.537 24.979 Atomic orbital electron populations 1.20876 0.88061 1.03486 1.04257 1.21398 0.98040 0.90469 1.08600 1.23644 0.99749 0.93988 0.91048 1.20469 1.00534 0.90298 0.96145 1.21516 1.00438 0.96859 0.96019 1.21559 1.00516 0.94260 0.98176 1.21167 1.00022 0.95228 0.94953 1.21809 1.00457 0.96265 1.01728 1.21570 1.00493 0.95250 0.97245 1.21555 1.00473 0.95688 0.97276 1.19152 0.87151 0.85073 0.76733 1.90652 1.15989 1.87842 1.52590 1.42463 1.09893 1.02363 1.70933 1.17398 0.90960 0.85793 1.21184 1.24135 0.95292 0.94712 1.09498 1.78139 1.05750 1.02870 1.27529 1.44859 1.02690 1.05726 1.40325 1.20663 0.97441 0.76864 1.53571 0.84005 1.26939 0.93712 1.07190 0.94123 1.70417 0.99058 1.38718 1.37149 0.84545 0.79573 0.72859 0.79013 1.19125 1.20156 1.16405 1.22000 0.95259 0.87663 1.18098 0.91466 0.88963 0.89155 0.88252 0.88043 0.92649 0.91995 0.90975 0.91566 0.92019 0.92577 0.92640 0.92217 0.91001 0.91509 0.91748 0.92586 0.74250 0.81878 0.91378 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 8.50 71.24 0.61 -1.15 16 2 C -0.18 -4.68 5.99 -18.71 -0.11 -4.80 16 3 C -0.06 -1.53 8.34 24.52 0.20 -1.32 16 4 C -0.06 -0.89 2.31 -11.54 -0.03 -0.92 16 5 C -0.11 -1.68 5.19 30.59 0.16 -1.53 16 6 C -0.11 -1.24 5.20 30.59 0.16 -1.08 16 7 C -0.10 -1.06 2.72 -10.79 -0.03 -1.09 16 8 C -0.15 -1.32 9.19 71.98 0.66 -0.66 16 9 C -0.11 -1.21 5.21 30.61 0.16 -1.05 16 10 C -0.11 -1.64 5.19 30.61 0.16 -1.48 16 11 C 0.53 19.91 7.72 86.56 0.67 20.58 16 12 O -0.59 -27.96 13.37 -4.15 -0.06 -28.01 16 13 N -0.61 -22.56 5.43 -307.19 -1.67 -24.23 16 14 C -0.05 -2.27 6.90 37.75 0.26 -2.01 16 15 C -0.06 -3.52 10.85 85.42 0.93 -2.59 16 16 N -0.31 -19.41 10.41 -56.45 -0.59 -20.00 16 17 N -0.17 -9.52 3.74 -190.00 -0.71 -10.23 16 18 C -0.35 -19.09 10.24 84.02 0.86 -18.23 16 19 H 0.14 6.58 7.84 -2.91 -0.02 6.56 16 20 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 21 N -0.83 -48.68 11.83 21.66 0.26 -48.42 16 22 Si 1.02 39.09 29.55 68.60 2.03 41.12 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 26 C -0.08 -3.81 11.49 83.38 0.96 -2.85 16 27 H 0.07 1.00 5.87 -2.39 -0.01 0.99 16 28 H 0.09 1.12 7.67 -2.39 -0.02 1.10 16 29 H 0.09 1.12 7.90 -2.39 -0.02 1.10 16 30 H 0.10 2.89 7.51 -2.91 -0.02 2.87 16 31 H 0.10 1.28 5.86 -2.39 -0.01 1.26 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.42 11.40 6.56 -92.71 -0.61 10.79 16 45 H 0.16 9.55 5.91 -2.91 -0.02 9.54 16 46 H 0.28 14.95 8.31 -92.70 -0.77 14.18 16 47 H 0.19 7.03 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -78.03 375.36 5.70 -72.32 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.36 Total: 37.59 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 6.08 Total: -20.13 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -2.71 Total: -102.88 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.06 Total: -28.01 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -78.03 5.70 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.618 kcal (2) G-P(sol) polarization free energy of solvation -78.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds