Wall clock time and date at job start Tue Mar 31 2020 11:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31885 * 119.61824 * 2 1 4 4 C 1.31855 * 121.73213 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.75738 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16152 * 359.77092 * 5 4 3 7 7 C 1.38182 * 119.61938 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.41578 * 359.97438 * 7 2 1 9 9 C 1.50697 * 109.47129 * 84.99795 * 8 7 2 10 10 O 1.21276 * 120.00401 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99555 * 180.02562 * 9 8 7 12 12 C 1.46510 * 119.99916 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.44263 * 34.95759 * 12 11 9 14 14 C 1.53046 * 109.45655 * 274.99860 * 12 11 9 15 15 C 1.53188 * 109.30760 * 178.61127 * 14 12 11 16 16 N 1.46920 * 108.77580 * 54.63833 * 15 14 12 17 17 C 1.36939 * 120.63582 * 126.36663 * 16 15 14 18 18 H 1.07995 * 120.00274 * 209.19622 * 17 16 15 19 19 C 1.38814 * 119.99924 * 29.19414 * 17 16 15 20 20 N 1.31623 * 119.99750 * 24.22945 * 19 17 16 21 21 Si 1.86799 * 120.00119 * 204.23697 * 19 17 16 22 22 H 1.48497 * 109.46863 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47014 * 299.99863 * 21 19 17 24 24 H 1.48505 * 109.47110 * 59.99717 * 21 19 17 25 25 C 1.46931 * 118.73802 * 306.63465 * 16 15 14 26 26 H 1.09003 * 109.58722 * 173.14742 * 25 16 15 27 27 C 1.52998 * 109.58769 * 293.57506 * 25 16 15 28 28 C 1.52760 * 109.00295 * 53.31541 * 25 16 15 29 29 H 1.08998 * 109.47198 * 269.98114 * 1 2 3 30 30 H 1.09001 * 109.47146 * 29.98186 * 1 2 3 31 31 H 1.08995 * 109.47018 * 149.97860 * 1 2 3 32 32 H 1.07991 * 119.62420 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.41648 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.78593 * 180.23258 * 6 5 4 35 35 H 1.09002 * 109.47002 * 324.99270 * 8 7 2 36 36 H 1.09000 * 109.46735 * 204.99687 * 8 7 2 37 37 H 0.97001 * 120.00336 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.49599 * 58.66118 * 14 12 11 39 39 H 1.08998 * 109.52068 * 298.58071 * 14 12 11 40 40 H 1.08993 * 109.59025 * 294.84561 * 15 14 12 41 41 H 1.09001 * 109.58413 * 174.42141 * 15 14 12 42 42 H 0.96998 * 120.00078 * 5.78560 * 20 19 17 43 43 H 1.09002 * 109.47380 * 59.99672 * 27 25 16 44 44 H 1.08998 * 109.46939 * 180.02562 * 27 25 16 45 45 H 1.08997 * 109.47070 * 299.99358 * 27 25 16 46 46 H 1.09001 * 109.56005 * 185.55445 * 28 25 16 47 47 H 1.09000 * 109.38856 * 65.51443 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0341 0.0016 6 6 3.5766 -1.1902 0.0070 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 6 1.0784 -2.8798 -1.4159 10 8 1.4016 -2.1565 -2.3341 11 7 0.3975 -4.0167 -1.6610 12 6 0.0481 -4.3792 -3.0370 13 1 0.8453 -4.0618 -3.7093 14 6 -1.2577 -3.6851 -3.4311 15 6 -1.6015 -4.0386 -4.8814 16 7 -1.6307 -5.5012 -5.0175 17 6 -2.7285 -6.1317 -5.5394 18 1 -2.9712 -7.1377 -5.2305 19 6 -3.5295 -5.4778 -6.4656 20 7 -3.0303 -4.5026 -7.1951 21 14 -5.3158 -5.9818 -6.6765 22 1 -5.9491 -5.1352 -7.7193 23 1 -5.3827 -7.4072 -7.0873 24 1 -6.0357 -5.8031 -5.3899 25 6 -0.4618 -6.2751 -4.5773 26 1 -0.6874 -7.3401 -4.6309 27 6 0.7336 -5.9552 -5.4770 28 6 -0.1286 -5.8961 -3.1355 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 3.9752 2.1530 0.0009 33 1 5.3057 0.0804 0.0024 34 1 4.1368 -2.1136 0.0117 35 1 0.5267 -2.4013 0.5894 36 1 2.0629 -3.2868 0.4333 37 1 0.1386 -4.5951 -0.9266 38 1 -1.1383 -2.6056 -3.3382 39 1 -2.0608 -4.0201 -2.7747 40 1 -0.8448 -3.6246 -5.5477 41 1 -2.5789 -3.6285 -5.1356 42 1 -2.0837 -4.2964 -7.1467 43 1 0.9599 -4.8906 -5.4158 44 1 1.5993 -6.5305 -5.1492 45 1 0.4931 -6.2168 -6.5074 46 1 0.7945 -6.3903 -2.8323 47 1 -0.9417 -6.2109 -2.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947719701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:27 Heat of formation + Delta-G solvation = 5.485503 kcal Electronic energy + Delta-G solvation = -26994.351616 eV Core-core repulsion = 23369.962516 eV Total energy + Delta-G solvation = -3624.389100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75907 -39.58619 -37.92109 -34.68959 -33.93193 -33.13576 -32.71632 -31.03394 -29.68229 -28.62186 -27.40168 -26.83508 -24.26103 -23.10767 -22.30677 -21.90946 -21.55952 -20.28343 -18.55056 -17.58894 -17.00548 -16.79301 -16.61013 -16.07958 -15.04102 -14.91276 -14.65923 -14.27159 -14.06995 -13.72959 -13.57598 -13.37871 -13.34132 -13.26240 -13.05030 -12.70108 -12.57885 -12.45674 -12.26970 -12.12220 -11.69666 -11.58216 -11.23886 -10.86870 -10.75749 -10.58947 -10.41663 -10.21648 -10.03223 -9.98543 -9.79499 -9.67276 -9.58169 -9.25565 -8.92084 -8.77993 -8.36222 -6.89238 -6.05996 -3.24515 0.92581 1.13311 2.68659 3.23225 3.49207 3.52399 3.69057 3.70734 4.15218 4.38087 4.56827 4.58018 4.71216 4.79151 4.85555 5.12676 5.15293 5.16820 5.23811 5.38588 5.40212 5.43079 5.46333 5.47369 5.54587 5.69084 5.87691 5.92003 5.92924 5.99161 6.06146 6.13293 6.19843 6.25580 6.32498 6.44490 6.49988 6.55291 6.61041 6.76130 6.83190 6.95817 7.09025 7.22826 7.61512 7.86058 8.01683 8.31958 8.58638 9.12291 9.84710 10.29858 11.22465 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.002905 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.356501 B = 9634.757358 C =10160.069803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.146 3.854 3 N -0.485 5.485 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.062 4.062 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.510 3.490 10 O -0.531 6.531 11 N -0.725 5.725 12 C 0.150 3.850 13 H 0.084 0.916 14 C -0.142 4.142 15 C 0.155 3.845 16 N -0.591 5.591 17 C -0.351 4.351 18 H 0.055 0.945 19 C -0.023 4.023 20 N -0.914 5.914 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.172 3.828 26 H 0.067 0.933 27 C -0.165 4.165 28 C -0.132 4.132 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.395 0.605 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.079 0.921 42 H 0.270 0.730 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 3.783 18.420 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.088 4.088 7 C -0.117 4.117 8 C -0.142 4.142 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.376 5.376 12 C 0.047 3.953 13 H 0.102 0.898 14 C -0.182 4.182 15 C 0.028 3.972 16 N -0.314 5.314 17 C -0.480 4.480 18 H 0.073 0.927 19 C -0.225 4.225 20 N -0.554 5.554 21 Si 0.894 3.106 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.064 3.936 26 H 0.085 0.915 27 C -0.224 4.224 28 C -0.172 4.172 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.266 5.445 16.917 20.524 hybrid contribution 2.013 -1.520 1.132 2.765 sum 12.279 3.925 18.050 22.180 Atomic orbital electron populations 1.20767 0.88990 1.04077 1.02686 1.21077 0.96896 0.87691 0.93469 1.67522 1.10082 1.29109 1.12741 1.22712 0.89504 0.98420 0.95096 1.22058 1.01338 0.93396 1.03219 1.21422 0.93556 0.98564 0.95255 1.20081 0.94195 0.94941 1.02448 1.20663 1.02053 0.95644 0.95833 1.20388 0.78094 0.81327 0.90661 1.90750 1.53366 1.50456 1.46077 1.46318 1.57306 1.23735 1.10240 1.21059 0.97849 0.95047 0.81330 0.89772 1.22440 0.96040 0.98981 1.00730 1.20891 1.00583 0.84949 0.90774 1.44196 1.13494 1.01076 1.72651 1.19933 1.04090 1.02001 1.21963 0.92714 1.25862 1.05713 0.98522 0.92412 1.70773 1.15956 1.32797 1.35838 0.83534 0.75768 0.75328 0.75948 1.21120 1.22017 1.22086 1.20350 0.87553 0.95955 0.89763 0.91527 1.22336 0.98060 1.00797 1.01240 1.22214 1.00506 0.93884 1.00585 0.90353 0.90159 0.90726 0.82857 0.84873 0.85036 0.87609 0.87980 0.77129 0.92757 0.92316 0.96275 0.90225 0.91897 0.93316 0.94215 0.92744 0.92496 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.39 36.00 0.34 -0.84 16 2 C 0.15 1.86 6.78 -82.59 -0.56 1.30 16 3 N -0.49 -6.43 10.27 -9.48 -0.10 -6.53 16 4 C 0.10 1.07 11.18 -17.54 -0.20 0.88 16 5 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 6 C -0.06 -0.64 9.84 -39.28 -0.39 -1.02 16 7 C -0.11 -1.31 4.39 -104.48 -0.46 -1.76 16 8 C -0.10 -0.94 5.16 -29.04 -0.15 -1.09 16 9 C 0.51 6.87 7.01 -10.99 -0.08 6.79 16 10 O -0.53 -9.70 15.70 5.56 0.09 -9.61 16 11 N -0.73 -9.23 5.08 -53.76 -0.27 -9.51 16 12 C 0.15 2.49 2.21 -67.88 -0.15 2.34 16 13 H 0.08 1.59 5.93 -51.93 -0.31 1.29 16 14 C -0.14 -2.72 5.65 -26.61 -0.15 -2.87 16 15 C 0.15 3.62 4.29 -3.72 -0.02 3.61 16 16 N -0.59 -14.27 2.55 -165.03 -0.42 -14.69 16 17 C -0.35 -9.54 9.48 -15.06 -0.14 -9.68 16 18 H 0.06 1.49 7.94 -52.49 -0.42 1.07 16 19 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 20 N -0.91 -27.28 12.45 55.49 0.69 -26.59 16 21 Si 1.06 25.00 29.98 -169.99 -5.10 19.90 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.17 3.42 3.27 -67.82 -0.22 3.20 16 26 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 27 C -0.16 -3.11 9.02 37.16 0.34 -2.78 16 28 C -0.13 -2.12 4.99 -26.84 -0.13 -2.25 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.84 6.15 -51.93 -0.32 0.52 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 0.77 7.00 -51.93 -0.36 0.40 16 36 H 0.10 0.67 8.06 -51.93 -0.42 0.25 16 37 H 0.40 3.74 8.60 -40.82 -0.35 3.39 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.47 7.23 -51.93 -0.38 0.10 16 41 H 0.08 2.11 6.39 -51.93 -0.33 1.78 16 42 H 0.27 8.15 6.71 -40.82 -0.27 7.88 16 43 H 0.05 0.95 5.74 -51.93 -0.30 0.65 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -34.03 371.82 -9.27 -43.30 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.31 Total: 5.14 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.45 Total: -7.03 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.10 Total: -57.31 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.03 -9.27 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.787 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds