Wall clock time and date at job start Tue Mar 31 2020 11:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31885 * 119.61824 * 2 1 4 4 C 1.31855 * 121.73213 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.75738 * 359.97438 * 4 3 2 6 6 C 1.38630 * 119.16152 * 359.77092 * 5 4 3 7 7 C 1.38182 * 119.61938 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.41578 * 359.97438 * 7 2 1 9 9 C 1.50697 * 109.47129 * 84.99795 * 8 7 2 10 10 O 1.21276 * 120.00401 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99555 * 180.02562 * 9 8 7 12 12 C 1.46510 * 119.99916 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.44263 * 34.95759 * 12 11 9 14 14 C 1.53046 * 109.45655 * 274.99860 * 12 11 9 15 15 C 1.53188 * 109.30760 * 178.61127 * 14 12 11 16 16 N 1.46920 * 108.77580 * 54.63833 * 15 14 12 17 17 C 1.36939 * 120.63582 * 126.36663 * 16 15 14 18 18 H 1.07995 * 120.00274 * 209.19622 * 17 16 15 19 19 C 1.38814 * 119.99924 * 29.19414 * 17 16 15 20 20 N 1.31623 * 119.99750 * 24.22945 * 19 17 16 21 21 Si 1.86799 * 120.00119 * 204.23697 * 19 17 16 22 22 H 1.48497 * 109.46863 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47014 * 299.99863 * 21 19 17 24 24 H 1.48505 * 109.47110 * 59.99717 * 21 19 17 25 25 C 1.46931 * 118.73802 * 306.63465 * 16 15 14 26 26 H 1.09003 * 109.58722 * 173.14742 * 25 16 15 27 27 C 1.52998 * 109.58769 * 293.57506 * 25 16 15 28 28 C 1.52760 * 109.00295 * 53.31541 * 25 16 15 29 29 H 1.08998 * 109.47198 * 269.98114 * 1 2 3 30 30 H 1.09001 * 109.47146 * 29.98186 * 1 2 3 31 31 H 1.08995 * 109.47018 * 149.97860 * 1 2 3 32 32 H 1.07991 * 119.62420 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.41648 * 180.02562 * 5 4 3 34 34 H 1.07998 * 120.78593 * 180.23258 * 6 5 4 35 35 H 1.09002 * 109.47002 * 324.99270 * 8 7 2 36 36 H 1.09000 * 109.46735 * 204.99687 * 8 7 2 37 37 H 0.97001 * 120.00336 * 359.97438 * 11 9 8 38 38 H 1.09004 * 109.49599 * 58.66118 * 14 12 11 39 39 H 1.08998 * 109.52068 * 298.58071 * 14 12 11 40 40 H 1.08993 * 109.59025 * 294.84561 * 15 14 12 41 41 H 1.09001 * 109.58413 * 174.42141 * 15 14 12 42 42 H 0.96998 * 120.00078 * 5.78560 * 20 19 17 43 43 H 1.09002 * 109.47380 * 59.99672 * 27 25 16 44 44 H 1.08998 * 109.46939 * 180.02562 * 27 25 16 45 45 H 1.08997 * 109.47070 * 299.99358 * 27 25 16 46 46 H 1.09001 * 109.56005 * 185.55445 * 28 25 16 47 47 H 1.09000 * 109.38856 * 65.51443 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1952 0.0005 5 6 4.2267 0.0341 0.0016 6 6 3.5766 -1.1902 0.0070 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0005 9 6 1.0784 -2.8798 -1.4159 10 8 1.4016 -2.1565 -2.3341 11 7 0.3975 -4.0167 -1.6610 12 6 0.0481 -4.3792 -3.0370 13 1 0.8453 -4.0618 -3.7093 14 6 -1.2577 -3.6851 -3.4311 15 6 -1.6015 -4.0386 -4.8814 16 7 -1.6307 -5.5012 -5.0175 17 6 -2.7285 -6.1317 -5.5394 18 1 -2.9712 -7.1377 -5.2305 19 6 -3.5295 -5.4778 -6.4656 20 7 -3.0303 -4.5026 -7.1951 21 14 -5.3158 -5.9818 -6.6765 22 1 -5.9491 -5.1352 -7.7193 23 1 -5.3827 -7.4072 -7.0873 24 1 -6.0357 -5.8031 -5.3899 25 6 -0.4618 -6.2751 -4.5773 26 1 -0.6874 -7.3401 -4.6309 27 6 0.7336 -5.9552 -5.4770 28 6 -0.1286 -5.8961 -3.1355 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 3.9752 2.1530 0.0009 33 1 5.3057 0.0804 0.0024 34 1 4.1368 -2.1136 0.0117 35 1 0.5267 -2.4013 0.5894 36 1 2.0629 -3.2868 0.4333 37 1 0.1386 -4.5951 -0.9266 38 1 -1.1383 -2.6056 -3.3382 39 1 -2.0608 -4.0201 -2.7747 40 1 -0.8448 -3.6246 -5.5477 41 1 -2.5789 -3.6285 -5.1356 42 1 -2.0837 -4.2964 -7.1467 43 1 0.9599 -4.8906 -5.4158 44 1 1.5993 -6.5305 -5.1492 45 1 0.4931 -6.2168 -6.5074 46 1 0.7945 -6.3903 -2.8323 47 1 -0.9417 -6.2109 -2.4814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:26 Heat of formation + Delta-G solvation = -16.868219 kcal Electronic energy + Delta-G solvation = -26995.320946 eV Core-core repulsion = 23369.962516 eV Total energy + Delta-G solvation = -3625.358430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64758 -40.73925 -39.40956 -36.20404 -34.79911 -34.42471 -33.90606 -32.63226 -31.30351 -29.67181 -28.65073 -27.97054 -26.07578 -24.18939 -23.65131 -23.33440 -22.67162 -21.38964 -20.23654 -19.31669 -17.98369 -17.80493 -17.56762 -17.19159 -16.24201 -16.09135 -15.89456 -15.68740 -15.46465 -15.33605 -15.13074 -14.86847 -14.47045 -14.25642 -14.01294 -14.01034 -13.84812 -13.50290 -13.36892 -13.26487 -13.05593 -12.80759 -12.63723 -12.49360 -12.35296 -12.28459 -11.97763 -11.92560 -11.76174 -11.48709 -11.19153 -10.98234 -10.61082 -10.46118 -10.39901 -10.03159 -9.72211 -8.92404 -8.22647 -5.39545 0.13732 0.36053 1.58657 1.65937 1.66505 1.84619 2.20144 2.66666 2.86136 3.23911 3.40060 3.48160 3.61013 3.73666 3.87431 3.96381 3.97708 4.05341 4.12130 4.20986 4.29921 4.39333 4.48042 4.54246 4.56029 4.60167 4.61613 4.67061 4.68300 4.73271 4.76365 4.84775 4.99126 5.01990 5.04952 5.11976 5.16884 5.21973 5.23527 5.26543 5.30163 5.52272 5.56186 5.81145 5.88752 6.40196 6.62489 7.05960 7.08239 7.32499 7.79519 8.25712 9.02455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.002905 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.356501 B = 9634.757358 C =10160.069803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.118 3.882 3 N -0.519 5.519 4 C 0.083 3.917 5 C -0.179 4.179 6 C -0.071 4.071 7 C -0.129 4.129 8 C -0.090 4.090 9 C 0.510 3.490 10 O -0.583 6.583 11 N -0.710 5.710 12 C 0.163 3.837 13 H 0.061 0.939 14 C -0.127 4.127 15 C 0.165 3.835 16 N -0.606 5.606 17 C -0.350 4.350 18 H 0.056 0.944 19 C -0.079 4.079 20 N -0.946 5.946 21 Si 1.114 2.886 22 H -0.297 1.297 23 H -0.274 1.274 24 H -0.278 1.278 25 C 0.161 3.839 26 H 0.066 0.934 27 C -0.155 4.155 28 C -0.117 4.117 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.175 0.825 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.417 0.583 38 H 0.045 0.955 39 H 0.064 0.936 40 H -0.006 1.006 41 H 0.040 0.960 42 H 0.252 0.748 43 H 0.035 0.965 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.094 0.906 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.200 1.873 21.515 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.019 4.019 3 N -0.229 5.229 4 C -0.074 4.074 5 C -0.199 4.199 6 C -0.097 4.097 7 C -0.131 4.131 8 C -0.130 4.130 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.362 5.362 12 C 0.058 3.942 13 H 0.079 0.921 14 C -0.167 4.167 15 C 0.039 3.961 16 N -0.330 5.330 17 C -0.480 4.480 18 H 0.074 0.926 19 C -0.275 4.275 20 N -0.588 5.588 21 Si 0.939 3.061 22 H -0.224 1.224 23 H -0.200 1.200 24 H -0.204 1.204 25 C 0.054 3.946 26 H 0.084 0.916 27 C -0.214 4.214 28 C -0.156 4.156 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.192 0.808 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.254 0.746 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.012 0.988 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.044 0.956 46 H 0.113 0.887 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.522 3.488 20.085 23.416 hybrid contribution 1.737 -0.904 0.167 1.965 sum 13.259 2.583 20.252 24.344 Atomic orbital electron populations 1.20757 0.88658 1.02971 1.03823 1.21383 0.97574 0.88385 0.94538 1.67492 1.11491 1.29948 1.14003 1.23206 0.89090 1.00157 0.94926 1.22435 1.02883 0.92807 1.01737 1.21857 0.93455 0.99907 0.94437 1.20334 0.95029 0.95245 1.02479 1.20700 1.03698 0.95691 0.92903 1.21127 0.76805 0.80344 0.91910 1.90745 1.55375 1.52000 1.48161 1.46014 1.56933 1.24135 1.09130 1.20619 0.95197 0.95147 0.83198 0.92110 1.22221 0.98048 0.98812 0.97661 1.20602 0.97647 0.84832 0.93067 1.44395 1.14576 1.01308 1.72724 1.20226 1.04877 1.01996 1.20892 0.92591 1.27211 1.09295 0.98516 0.92442 1.70899 1.14854 1.34946 1.38133 0.82870 0.71420 0.75699 0.76134 1.22358 1.19956 1.20422 1.20622 0.86248 0.95364 0.92324 0.91622 1.22217 0.99178 1.00529 0.99515 1.22035 1.02673 0.93306 0.97596 0.88065 0.91721 0.91277 0.80752 0.81865 0.82472 0.85186 0.84139 0.74569 0.93616 0.91768 0.98821 0.94121 0.93788 0.94595 0.90346 0.95584 0.88726 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.39 71.23 0.67 -1.60 16 2 C 0.12 2.93 6.78 42.54 0.29 3.22 16 3 N -0.52 -13.72 10.27 -183.89 -1.89 -15.60 16 4 C 0.08 1.70 11.18 84.69 0.95 2.65 16 5 C -0.18 -3.03 10.11 22.36 0.23 -2.80 16 6 C -0.07 -1.26 9.84 22.47 0.22 -1.04 16 7 C -0.13 -2.67 4.39 -19.77 -0.09 -2.75 16 8 C -0.09 -1.36 5.16 29.10 0.15 -1.21 16 9 C 0.51 12.56 7.01 87.66 0.61 13.18 16 10 O -0.58 -21.05 15.70 -3.02 -0.05 -21.10 16 11 N -0.71 -15.85 5.08 -442.39 -2.25 -18.10 16 12 C 0.16 5.13 2.21 45.02 0.10 5.23 16 13 H 0.06 2.26 5.93 -2.39 -0.01 2.25 16 14 C -0.13 -4.92 5.65 30.67 0.17 -4.74 16 15 C 0.17 8.10 4.29 86.36 0.37 8.47 16 16 N -0.61 -29.70 2.55 -676.05 -1.72 -31.42 16 17 C -0.35 -19.26 9.48 84.03 0.80 -18.46 16 18 H 0.06 3.02 7.94 -2.91 -0.02 3.00 16 19 C -0.08 -4.49 4.69 84.86 0.40 -4.09 16 20 N -0.95 -59.03 12.45 21.65 0.27 -58.76 16 21 Si 1.11 51.03 29.98 68.60 2.06 53.09 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 C 0.16 6.23 3.27 44.83 0.15 6.38 16 26 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 27 C -0.16 -5.78 9.02 71.98 0.65 -5.13 16 28 C -0.12 -3.38 4.99 30.53 0.15 -3.22 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.52 6.15 -2.39 -0.01 1.51 16 32 H 0.18 2.52 8.06 -2.92 -0.02 2.50 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.13 1.36 7.00 -2.39 -0.02 1.34 16 36 H 0.14 1.07 8.06 -2.39 -0.02 1.05 16 37 H 0.42 5.94 8.60 -92.71 -0.80 5.14 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.01 -0.33 7.23 -2.39 -0.02 -0.34 16 41 H 0.04 2.28 6.39 -2.39 -0.02 2.26 16 42 H 0.25 16.19 6.71 -92.71 -0.62 15.57 16 43 H 0.03 1.41 5.74 -2.39 -0.01 1.40 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -79.44 371.82 2.56 -76.88 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.32 Total: 20.94 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.82 Total: -5.92 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -5.59 Total: -123.88 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.06 Total: 53.09 kcal Total: -79.44 2.56 -76.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.011 kcal (2) G-P(sol) polarization free energy of solvation -79.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds