Wall clock time and date at job start Tue Mar 31 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38223 * 119.61649 * 2 1 4 4 C 1.38628 * 119.15771 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.42124 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.41484 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47137 * 90.00026 * 6 5 4 8 8 O 1.21280 * 119.99754 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.46492 * 119.99717 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46169 * 35.03189 * 10 9 7 12 12 C 1.53036 * 109.45318 * 275.06293 * 10 9 7 13 13 C 1.53624 * 109.24589 * 178.49791 * 12 10 9 14 14 N 1.46931 * 108.54169 * 54.85612 * 13 12 10 15 15 C 1.36940 * 120.62705 * 126.36561 * 14 13 12 16 16 H 1.08002 * 119.99955 * 208.85025 * 15 14 13 17 17 C 1.38815 * 119.99799 * 29.13255 * 15 14 13 18 18 N 1.31614 * 120.00064 * 14.76938 * 17 15 14 19 19 Si 1.86797 * 119.99562 * 194.76735 * 17 15 14 20 20 H 1.48499 * 109.47595 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46779 * 120.00262 * 19 17 15 22 22 H 1.48495 * 109.47384 * 239.99559 * 19 17 15 23 23 C 1.46921 * 118.73719 * 306.09636 * 14 13 12 24 24 H 1.08997 * 109.58500 * 293.92595 * 23 14 13 25 25 C 1.53004 * 109.58196 * 173.64501 * 23 14 13 26 26 C 1.53047 * 109.45747 * 155.00209 * 10 9 7 27 27 C 1.38178 * 119.16103 * 0.26897 * 5 4 3 28 28 N 1.31851 * 119.61411 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47081 * 90.00056 * 1 2 3 30 30 H 1.08993 * 109.47206 * 209.99638 * 1 2 3 31 31 H 1.09000 * 109.46936 * 330.00002 * 1 2 3 32 32 H 1.07999 * 120.42321 * 0.04384 * 3 2 1 33 33 H 1.08002 * 120.78756 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47666 * 329.99772 * 6 5 4 35 35 H 1.09001 * 109.47066 * 209.99731 * 6 5 4 36 36 H 0.96998 * 119.99993 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.49914 * 298.57341 * 12 10 9 38 38 H 1.09001 * 109.49469 * 58.67407 * 12 10 9 39 39 H 1.08996 * 109.73965 * 295.11988 * 13 12 10 40 40 H 1.08999 * 109.66525 * 174.55078 * 13 12 10 41 41 H 0.97003 * 119.99912 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47275 * 60.00267 * 25 23 14 43 43 H 1.09008 * 109.46820 * 179.97438 * 25 23 14 44 44 H 1.09001 * 109.47306 * 299.99778 * 25 23 14 45 45 H 1.09001 * 109.49668 * 61.42404 * 26 10 9 46 46 H 1.08994 * 109.52491 * 301.33803 * 26 10 9 47 47 H 1.08006 * 119.61286 * 179.70407 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0016 6 6 5.7323 -0.0988 -0.0017 7 6 6.2342 -0.1215 1.4192 8 8 5.4467 -0.0882 2.3410 9 7 7.5580 -0.1790 1.6654 10 6 8.0458 -0.2005 3.0466 11 1 7.3485 -0.7610 3.6693 12 6 8.1578 1.2332 3.5700 13 6 8.6336 1.2034 5.0304 14 7 9.8854 0.4371 5.0984 15 6 11.0037 0.9774 5.6753 16 1 11.9845 0.6709 5.3428 17 6 10.8766 1.9146 6.6913 18 7 9.7203 2.0729 7.2998 19 14 12.3468 2.9510 7.1951 20 1 13.5203 2.5832 6.3628 21 1 12.0305 4.3883 6.9962 22 1 12.6580 2.7062 8.6262 23 6 9.9128 -0.9221 4.5411 24 1 9.2616 -1.5705 5.1272 25 6 11.3436 -1.4630 4.5786 26 6 9.4211 -0.8705 3.0911 27 6 3.4766 -1.1948 -0.0078 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 0.0007 33 1 4.1366 2.1139 -0.0001 34 1 6.1334 0.7752 -0.5147 35 1 6.0572 -1.0031 -0.5162 36 1 8.1877 -0.2053 0.9282 37 1 8.8737 1.7873 2.9628 38 1 7.1827 1.7173 3.5162 39 1 7.8782 0.7254 5.6540 40 1 8.8086 2.2209 5.3800 41 1 9.6316 2.7276 8.0100 42 1 11.6960 -1.4870 5.6097 43 1 11.3617 -2.4714 4.1652 44 1 11.9922 -0.8160 3.9878 45 1 10.1251 -0.2966 2.4884 46 1 9.3457 -1.8837 2.6963 47 1 3.9755 -2.1527 -0.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948043857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:37 Heat of formation + Delta-G solvation = 6.712744 kcal Electronic energy + Delta-G solvation = -26346.658479 eV Core-core repulsion = 22722.322596 eV Total energy + Delta-G solvation = -3624.335883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60735 -39.50171 -37.65432 -34.64987 -34.13054 -32.43702 -32.41855 -31.43936 -30.21305 -29.23384 -26.54612 -26.09757 -24.67678 -23.68220 -22.29493 -21.77670 -20.87132 -20.04395 -19.20636 -17.07929 -16.85659 -16.48075 -16.27035 -15.85353 -15.20128 -14.89682 -14.82914 -14.56876 -13.96604 -13.76771 -13.56381 -13.43624 -13.26236 -13.13342 -12.92098 -12.76515 -12.50642 -12.43291 -12.19791 -11.70872 -11.60694 -11.22645 -11.10389 -10.92198 -10.90527 -10.66410 -10.30469 -10.14929 -10.05421 -9.97683 -9.79145 -9.73671 -9.58828 -9.37198 -8.87584 -8.71282 -8.42939 -6.64703 -5.77137 -3.21453 0.93798 1.17700 2.76776 3.28703 3.36760 3.44236 3.45922 3.73201 4.13434 4.48463 4.48657 4.54578 4.74258 4.82497 4.93808 5.09215 5.21801 5.27687 5.34693 5.35770 5.37828 5.41105 5.44561 5.58589 5.61786 5.77181 5.80689 5.97695 5.99221 6.10803 6.14689 6.25235 6.30689 6.41262 6.41962 6.50634 6.57337 6.64108 6.78401 6.89359 7.02632 7.09024 7.38596 7.67767 7.72250 7.82296 7.86640 8.40016 8.46914 9.22334 9.85876 10.42870 11.31339 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.002556 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.822200 B =10951.584428 C =11588.584714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.119 4.119 6 C -0.099 4.099 7 C 0.509 3.491 8 O -0.532 6.532 9 N -0.725 5.725 10 C 0.150 3.850 11 H 0.080 0.920 12 C -0.146 4.146 13 C 0.175 3.825 14 N -0.588 5.588 15 C -0.250 4.250 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.170 3.830 24 H 0.026 0.974 25 C -0.135 4.135 26 C -0.133 4.133 27 C 0.118 3.882 28 N -0.485 5.485 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.395 0.605 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.020 0.980 40 H 0.090 0.910 41 H 0.253 0.747 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -3.828 -18.696 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 C -0.190 4.190 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.140 4.140 7 C 0.294 3.706 8 O -0.408 6.408 9 N -0.375 5.375 10 C 0.047 3.953 11 H 0.098 0.902 12 C -0.186 4.186 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.379 4.379 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.063 3.937 24 H 0.044 0.956 25 C -0.193 4.193 26 C -0.173 4.173 27 C -0.040 4.040 28 N -0.194 5.194 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.444 -4.477 -17.858 21.678 hybrid contribution 1.591 1.463 0.019 2.161 sum -9.853 -3.014 -17.839 20.601 Atomic orbital electron populations 1.20698 0.88966 1.03501 1.02844 1.21283 0.96997 0.88470 0.94916 1.21901 0.94735 0.99254 1.03147 1.21436 0.94441 0.97770 0.94736 1.20270 0.95294 0.94581 1.02035 1.20616 0.92258 1.05367 0.95726 1.20415 0.82695 0.76713 0.90756 1.90750 1.55225 1.48739 1.46124 1.46328 1.06557 1.74884 1.09769 1.21039 0.95440 0.98022 0.80775 0.90175 1.22631 0.99972 0.94721 1.01299 1.20848 0.86574 0.98849 0.88888 1.44198 1.09650 1.09623 1.67667 1.19219 0.86417 1.20166 1.12123 0.91152 1.25116 0.96721 1.01791 0.96132 1.70023 1.23744 1.36291 1.24677 0.86251 0.82336 0.80313 0.78032 1.20292 1.21664 1.21768 1.20364 0.94892 0.88156 0.90319 0.95596 1.21796 0.97025 0.98119 1.02351 1.22367 0.95259 0.98908 1.00742 1.22536 0.89235 0.97766 0.94425 1.67504 1.09739 1.29381 1.12800 0.90568 0.90504 0.90764 0.84870 0.84947 0.87898 0.87802 0.77201 0.92718 0.93069 0.96210 0.89141 0.93698 0.91858 0.94309 0.92788 0.91821 0.92722 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.17 36.01 0.37 -0.45 16 2 C 0.12 1.36 6.78 -82.59 -0.56 0.80 16 3 C -0.17 -1.76 9.74 -39.44 -0.38 -2.15 16 4 C -0.06 -0.63 9.86 -39.28 -0.39 -1.01 16 5 C -0.12 -1.34 4.39 -104.48 -0.46 -1.80 16 6 C -0.10 -0.91 5.86 -29.03 -0.17 -1.08 16 7 C 0.51 7.02 7.79 -10.98 -0.09 6.93 16 8 O -0.53 -9.98 15.70 5.56 0.09 -9.90 16 9 N -0.72 -9.49 5.08 -53.77 -0.27 -9.76 16 10 C 0.15 2.57 2.41 -67.89 -0.16 2.40 16 11 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 12 C -0.15 -2.87 5.67 -26.39 -0.15 -3.02 16 13 C 0.17 4.22 5.31 -3.48 -0.02 4.20 16 14 N -0.59 -14.30 2.98 -164.51 -0.49 -14.79 16 15 C -0.25 -6.60 8.60 -15.06 -0.13 -6.72 16 16 H 0.07 1.81 6.21 -52.49 -0.33 1.48 16 17 C 0.00 0.02 4.96 -17.43 -0.09 -0.06 16 18 N -0.90 -26.19 11.13 55.49 0.62 -25.57 16 19 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 C 0.17 3.43 3.49 -67.60 -0.24 3.19 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.14 -2.45 7.94 37.16 0.30 -2.16 16 26 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 27 C 0.12 1.41 10.86 -17.55 -0.19 1.22 16 28 N -0.49 -6.31 10.27 -9.47 -0.10 -6.41 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.10 0.68 8.09 -51.93 -0.42 0.25 16 36 H 0.39 3.85 8.60 -40.82 -0.35 3.50 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 43 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.48 378.29 -9.61 -43.09 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.64 Total: 3.20 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.49 Total: -2.00 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.24 Total: -56.53 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.48 -9.61 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948043857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.799 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds