Wall clock time and date at job start Tue Mar 31 2020 11:46:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38223 * 119.61649 * 2 1
4 4 C 1.38628 * 119.15771 * 180.02562 * 3 2 1
5 5 C 1.38675 * 118.42124 * 0.02562 * 4 3 2
6 6 C 1.50700 * 120.41484 * 180.02562 * 5 4 3
7 7 C 1.50708 * 109.47137 * 90.00026 * 6 5 4
8 8 O 1.21280 * 119.99754 * 359.97438 * 7 6 5
9 9 N 1.34777 * 119.99924 * 179.97438 * 7 6 5
10 10 C 1.46492 * 119.99717 * 179.97438 * 9 7 6
11 11 H 1.09003 * 109.46169 * 35.03189 * 10 9 7
12 12 C 1.53036 * 109.45318 * 275.06293 * 10 9 7
13 13 C 1.53624 * 109.24589 * 178.49791 * 12 10 9
14 14 N 1.46931 * 108.54169 * 54.85612 * 13 12 10
15 15 C 1.36940 * 120.62705 * 126.36561 * 14 13 12
16 16 H 1.08002 * 119.99955 * 208.85025 * 15 14 13
17 17 C 1.38815 * 119.99799 * 29.13255 * 15 14 13
18 18 N 1.31614 * 120.00064 * 14.76938 * 17 15 14
19 19 Si 1.86797 * 119.99562 * 194.76735 * 17 15 14
20 20 H 1.48499 * 109.47595 * 0.02562 * 19 17 15
21 21 H 1.48507 * 109.46779 * 120.00262 * 19 17 15
22 22 H 1.48495 * 109.47384 * 239.99559 * 19 17 15
23 23 C 1.46921 * 118.73719 * 306.09636 * 14 13 12
24 24 H 1.08997 * 109.58500 * 293.92595 * 23 14 13
25 25 C 1.53004 * 109.58196 * 173.64501 * 23 14 13
26 26 C 1.53047 * 109.45747 * 155.00209 * 10 9 7
27 27 C 1.38178 * 119.16103 * 0.26897 * 5 4 3
28 28 N 1.31851 * 119.61411 * 180.02562 * 2 1 3
29 29 H 1.09002 * 109.47081 * 90.00056 * 1 2 3
30 30 H 1.08993 * 109.47206 * 209.99638 * 1 2 3
31 31 H 1.09000 * 109.46936 * 330.00002 * 1 2 3
32 32 H 1.07999 * 120.42321 * 0.04384 * 3 2 1
33 33 H 1.08002 * 120.78756 * 180.02562 * 4 3 2
34 34 H 1.08995 * 109.47666 * 329.99772 * 6 5 4
35 35 H 1.09001 * 109.47066 * 209.99731 * 6 5 4
36 36 H 0.96998 * 119.99993 * 0.02562 * 9 7 6
37 37 H 1.08999 * 109.49914 * 298.57341 * 12 10 9
38 38 H 1.09001 * 109.49469 * 58.67407 * 12 10 9
39 39 H 1.08996 * 109.73965 * 295.11988 * 13 12 10
40 40 H 1.08999 * 109.66525 * 174.55078 * 13 12 10
41 41 H 0.97003 * 119.99912 * 179.97438 * 18 17 15
42 42 H 1.08996 * 109.47275 * 60.00267 * 25 23 14
43 43 H 1.09008 * 109.46820 * 179.97438 * 25 23 14
44 44 H 1.09001 * 109.47306 * 299.99778 * 25 23 14
45 45 H 1.09001 * 109.49668 * 61.42404 * 26 10 9
46 46 H 1.08994 * 109.52491 * 301.33803 * 26 10 9
47 47 H 1.08006 * 119.61286 * 179.70407 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1902 1.2016 0.0000
4 6 3.5764 1.1905 -0.0005
5 6 4.2267 -0.0343 -0.0016
6 6 5.7323 -0.0988 -0.0017
7 6 6.2342 -0.1215 1.4192
8 8 5.4467 -0.0882 2.3410
9 7 7.5580 -0.1790 1.6654
10 6 8.0458 -0.2005 3.0466
11 1 7.3485 -0.7610 3.6693
12 6 8.1578 1.2332 3.5700
13 6 8.6336 1.2034 5.0304
14 7 9.8854 0.4371 5.0984
15 6 11.0037 0.9774 5.6753
16 1 11.9845 0.6709 5.3428
17 6 10.8766 1.9146 6.6913
18 7 9.7203 2.0729 7.2998
19 14 12.3468 2.9510 7.1951
20 1 13.5203 2.5832 6.3628
21 1 12.0305 4.3883 6.9962
22 1 12.6580 2.7062 8.6262
23 6 9.9128 -0.9221 4.5411
24 1 9.2616 -1.5705 5.1272
25 6 11.3436 -1.4630 4.5786
26 6 9.4211 -0.8705 3.0911
27 6 3.4766 -1.1948 -0.0078
28 7 2.1586 -1.1463 -0.0005
29 1 -0.3633 0.0000 -1.0277
30 1 -0.3633 -0.8900 0.5137
31 1 -0.3633 0.8900 0.5138
32 1 1.6508 2.1373 0.0007
33 1 4.1366 2.1139 -0.0001
34 1 6.1334 0.7752 -0.5147
35 1 6.0572 -1.0031 -0.5162
36 1 8.1877 -0.2053 0.9282
37 1 8.8737 1.7873 2.9628
38 1 7.1827 1.7173 3.5162
39 1 7.8782 0.7254 5.6540
40 1 8.8086 2.2209 5.3800
41 1 9.6316 2.7276 8.0100
42 1 11.6960 -1.4870 5.6097
43 1 11.3617 -2.4714 4.1652
44 1 11.9922 -0.8160 3.9878
45 1 10.1251 -0.2966 2.4884
46 1 9.3457 -1.8837 2.6963
47 1 3.9755 -2.1527 -0.0135
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000948043857.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:46:37
Heat of formation + Delta-G solvation = 6.712744 kcal
Electronic energy + Delta-G solvation = -26346.658479 eV
Core-core repulsion = 22722.322596 eV
Total energy + Delta-G solvation = -3624.335883 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.60735 -39.50171 -37.65432 -34.64987 -34.13054 -32.43702 -32.41855 -31.43936
-30.21305 -29.23384 -26.54612 -26.09757 -24.67678 -23.68220 -22.29493 -21.77670
-20.87132 -20.04395 -19.20636 -17.07929 -16.85659 -16.48075 -16.27035 -15.85353
-15.20128 -14.89682 -14.82914 -14.56876 -13.96604 -13.76771 -13.56381 -13.43624
-13.26236 -13.13342 -12.92098 -12.76515 -12.50642 -12.43291 -12.19791 -11.70872
-11.60694 -11.22645 -11.10389 -10.92198 -10.90527 -10.66410 -10.30469 -10.14929
-10.05421 -9.97683 -9.79145 -9.73671 -9.58828 -9.37198 -8.87584 -8.71282
-8.42939 -6.64703 -5.77137 -3.21453 0.93798 1.17700 2.76776 3.28703
3.36760 3.44236 3.45922 3.73201 4.13434 4.48463 4.48657 4.54578
4.74258 4.82497 4.93808 5.09215 5.21801 5.27687 5.34693 5.35770
5.37828 5.41105 5.44561 5.58589 5.61786 5.77181 5.80689 5.97695
5.99221 6.10803 6.14689 6.25235 6.30689 6.41262 6.41962 6.50634
6.57337 6.64108 6.78401 6.89359 7.02632 7.09024 7.38596 7.67767
7.72250 7.82296 7.86640 8.40016 8.46914 9.22334 9.85876 10.42870
11.31339
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.023787 B = 0.002556 C = 0.002416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.822200 B =10951.584428 C =11588.584714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.121 3.879
3 C -0.171 4.171
4 C -0.058 4.058
5 C -0.119 4.119
6 C -0.099 4.099
7 C 0.509 3.491
8 O -0.532 6.532
9 N -0.725 5.725
10 C 0.150 3.850
11 H 0.080 0.920
12 C -0.146 4.146
13 C 0.175 3.825
14 N -0.588 5.588
15 C -0.250 4.250
16 H 0.071 0.929
17 C 0.001 3.999
18 N -0.903 5.903
19 Si 0.901 3.099
20 H -0.278 1.278
21 H -0.290 1.290
22 H -0.291 1.291
23 C 0.170 3.830
24 H 0.026 0.974
25 C -0.135 4.135
26 C -0.133 4.133
27 C 0.118 3.882
28 N -0.485 5.485
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.073 0.927
32 H 0.133 0.867
33 H 0.133 0.867
34 H 0.103 0.897
35 H 0.104 0.896
36 H 0.395 0.605
37 H 0.054 0.946
38 H 0.051 0.949
39 H 0.020 0.980
40 H 0.090 0.910
41 H 0.253 0.747
42 H 0.062 0.938
43 H 0.038 0.962
44 H 0.053 0.947
45 H 0.063 0.937
46 H 0.054 0.946
47 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.365 -3.828 -18.696 21.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.017 4.017
3 C -0.190 4.190
4 C -0.084 4.084
5 C -0.122 4.122
6 C -0.140 4.140
7 C 0.294 3.706
8 O -0.408 6.408
9 N -0.375 5.375
10 C 0.047 3.953
11 H 0.098 0.902
12 C -0.186 4.186
13 C 0.048 3.952
14 N -0.311 5.311
15 C -0.379 4.379
16 H 0.088 0.912
17 C -0.198 4.198
18 N -0.547 5.547
19 Si 0.731 3.269
20 H -0.203 1.203
21 H -0.217 1.217
22 H -0.218 1.218
23 C 0.063 3.937
24 H 0.044 0.956
25 C -0.193 4.193
26 C -0.173 4.173
27 C -0.040 4.040
28 N -0.194 5.194
29 H 0.094 0.906
30 H 0.095 0.905
31 H 0.092 0.908
32 H 0.151 0.849
33 H 0.151 0.849
34 H 0.121 0.879
35 H 0.122 0.878
36 H 0.228 0.772
37 H 0.073 0.927
38 H 0.069 0.931
39 H 0.038 0.962
40 H 0.109 0.891
41 H 0.063 0.937
42 H 0.081 0.919
43 H 0.057 0.943
44 H 0.072 0.928
45 H 0.082 0.918
46 H 0.073 0.927
47 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -11.444 -4.477 -17.858 21.678
hybrid contribution 1.591 1.463 0.019 2.161
sum -9.853 -3.014 -17.839 20.601
Atomic orbital electron populations
1.20698 0.88966 1.03501 1.02844 1.21283 0.96997 0.88470 0.94916
1.21901 0.94735 0.99254 1.03147 1.21436 0.94441 0.97770 0.94736
1.20270 0.95294 0.94581 1.02035 1.20616 0.92258 1.05367 0.95726
1.20415 0.82695 0.76713 0.90756 1.90750 1.55225 1.48739 1.46124
1.46328 1.06557 1.74884 1.09769 1.21039 0.95440 0.98022 0.80775
0.90175 1.22631 0.99972 0.94721 1.01299 1.20848 0.86574 0.98849
0.88888 1.44198 1.09650 1.09623 1.67667 1.19219 0.86417 1.20166
1.12123 0.91152 1.25116 0.96721 1.01791 0.96132 1.70023 1.23744
1.36291 1.24677 0.86251 0.82336 0.80313 0.78032 1.20292 1.21664
1.21768 1.20364 0.94892 0.88156 0.90319 0.95596 1.21796 0.97025
0.98119 1.02351 1.22367 0.95259 0.98908 1.00742 1.22536 0.89235
0.97766 0.94425 1.67504 1.09739 1.29381 1.12800 0.90568 0.90504
0.90764 0.84870 0.84947 0.87898 0.87802 0.77201 0.92718 0.93069
0.96210 0.89141 0.93698 0.91858 0.94309 0.92788 0.91821 0.92722
0.83038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.82 10.17 36.01 0.37 -0.45 16
2 C 0.12 1.36 6.78 -82.59 -0.56 0.80 16
3 C -0.17 -1.76 9.74 -39.44 -0.38 -2.15 16
4 C -0.06 -0.63 9.86 -39.28 -0.39 -1.01 16
5 C -0.12 -1.34 4.39 -104.48 -0.46 -1.80 16
6 C -0.10 -0.91 5.86 -29.03 -0.17 -1.08 16
7 C 0.51 7.02 7.79 -10.98 -0.09 6.93 16
8 O -0.53 -9.98 15.70 5.56 0.09 -9.90 16
9 N -0.72 -9.49 5.08 -53.77 -0.27 -9.76 16
10 C 0.15 2.57 2.41 -67.89 -0.16 2.40 16
11 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16
12 C -0.15 -2.87 5.67 -26.39 -0.15 -3.02 16
13 C 0.17 4.22 5.31 -3.48 -0.02 4.20 16
14 N -0.59 -14.30 2.98 -164.51 -0.49 -14.79 16
15 C -0.25 -6.60 8.60 -15.06 -0.13 -6.72 16
16 H 0.07 1.81 6.21 -52.49 -0.33 1.48 16
17 C 0.00 0.02 4.96 -17.43 -0.09 -0.06 16
18 N -0.90 -26.19 11.13 55.49 0.62 -25.57 16
19 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16
20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
23 C 0.17 3.43 3.49 -67.60 -0.24 3.19 16
24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
25 C -0.14 -2.45 7.94 37.16 0.30 -2.16 16
26 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16
27 C 0.12 1.41 10.86 -17.55 -0.19 1.22 16
28 N -0.49 -6.31 10.27 -9.47 -0.10 -6.41 16
29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16
32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16
33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
34 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16
35 H 0.10 0.68 8.09 -51.93 -0.42 0.25 16
36 H 0.39 3.85 8.60 -40.82 -0.35 3.50 16
37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16
40 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16
41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
42 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16
43 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16
44 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16
45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
47 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16
LS Contribution 378.29 15.07 5.70 5.70
Total: -1.00 -33.48 378.29 -9.61 -43.09
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: -7.64 Total: 3.20 kcal
Atomic # 6 Polarization: 0.49 SS G_CDS: -2.49 Total: -2.00 kcal
Atomic # 7 Polarization: -56.29 SS G_CDS: -0.24 Total: -56.53 kcal
Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.48 -9.61 -43.09 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000948043857.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.799 kcal
(2) G-P(sol) polarization free energy of solvation -33.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds