Wall clock time and date at job start Tue Mar 31 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38223 * 119.61649 * 2 1 4 4 C 1.38628 * 119.15771 * 180.02562 * 3 2 1 5 5 C 1.38675 * 118.42124 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.41484 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47137 * 90.00026 * 6 5 4 8 8 O 1.21280 * 119.99754 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99924 * 179.97438 * 7 6 5 10 10 C 1.46492 * 119.99717 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46169 * 35.03189 * 10 9 7 12 12 C 1.53036 * 109.45318 * 275.06293 * 10 9 7 13 13 C 1.53624 * 109.24589 * 178.49791 * 12 10 9 14 14 N 1.46931 * 108.54169 * 54.85612 * 13 12 10 15 15 C 1.36940 * 120.62705 * 126.36561 * 14 13 12 16 16 H 1.08002 * 119.99955 * 208.85025 * 15 14 13 17 17 C 1.38815 * 119.99799 * 29.13255 * 15 14 13 18 18 N 1.31614 * 120.00064 * 14.76938 * 17 15 14 19 19 Si 1.86797 * 119.99562 * 194.76735 * 17 15 14 20 20 H 1.48499 * 109.47595 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46779 * 120.00262 * 19 17 15 22 22 H 1.48495 * 109.47384 * 239.99559 * 19 17 15 23 23 C 1.46921 * 118.73719 * 306.09636 * 14 13 12 24 24 H 1.08997 * 109.58500 * 293.92595 * 23 14 13 25 25 C 1.53004 * 109.58196 * 173.64501 * 23 14 13 26 26 C 1.53047 * 109.45747 * 155.00209 * 10 9 7 27 27 C 1.38178 * 119.16103 * 0.26897 * 5 4 3 28 28 N 1.31851 * 119.61411 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47081 * 90.00056 * 1 2 3 30 30 H 1.08993 * 109.47206 * 209.99638 * 1 2 3 31 31 H 1.09000 * 109.46936 * 330.00002 * 1 2 3 32 32 H 1.07999 * 120.42321 * 0.04384 * 3 2 1 33 33 H 1.08002 * 120.78756 * 180.02562 * 4 3 2 34 34 H 1.08995 * 109.47666 * 329.99772 * 6 5 4 35 35 H 1.09001 * 109.47066 * 209.99731 * 6 5 4 36 36 H 0.96998 * 119.99993 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.49914 * 298.57341 * 12 10 9 38 38 H 1.09001 * 109.49469 * 58.67407 * 12 10 9 39 39 H 1.08996 * 109.73965 * 295.11988 * 13 12 10 40 40 H 1.08999 * 109.66525 * 174.55078 * 13 12 10 41 41 H 0.97003 * 119.99912 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47275 * 60.00267 * 25 23 14 43 43 H 1.09008 * 109.46820 * 179.97438 * 25 23 14 44 44 H 1.09001 * 109.47306 * 299.99778 * 25 23 14 45 45 H 1.09001 * 109.49668 * 61.42404 * 26 10 9 46 46 H 1.08994 * 109.52491 * 301.33803 * 26 10 9 47 47 H 1.08006 * 119.61286 * 179.70407 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0016 6 6 5.7323 -0.0988 -0.0017 7 6 6.2342 -0.1215 1.4192 8 8 5.4467 -0.0882 2.3410 9 7 7.5580 -0.1790 1.6654 10 6 8.0458 -0.2005 3.0466 11 1 7.3485 -0.7610 3.6693 12 6 8.1578 1.2332 3.5700 13 6 8.6336 1.2034 5.0304 14 7 9.8854 0.4371 5.0984 15 6 11.0037 0.9774 5.6753 16 1 11.9845 0.6709 5.3428 17 6 10.8766 1.9146 6.6913 18 7 9.7203 2.0729 7.2998 19 14 12.3468 2.9510 7.1951 20 1 13.5203 2.5832 6.3628 21 1 12.0305 4.3883 6.9962 22 1 12.6580 2.7062 8.6262 23 6 9.9128 -0.9221 4.5411 24 1 9.2616 -1.5705 5.1272 25 6 11.3436 -1.4630 4.5786 26 6 9.4211 -0.8705 3.0911 27 6 3.4766 -1.1948 -0.0078 28 7 2.1586 -1.1463 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 0.0007 33 1 4.1366 2.1139 -0.0001 34 1 6.1334 0.7752 -0.5147 35 1 6.0572 -1.0031 -0.5162 36 1 8.1877 -0.2053 0.9282 37 1 8.8737 1.7873 2.9628 38 1 7.1827 1.7173 3.5162 39 1 7.8782 0.7254 5.6540 40 1 8.8086 2.2209 5.3800 41 1 9.6316 2.7276 8.0100 42 1 11.6960 -1.4870 5.6097 43 1 11.3617 -2.4714 4.1652 44 1 11.9922 -0.8160 3.9878 45 1 10.1251 -0.2966 2.4884 46 1 9.3457 -1.8837 2.6963 47 1 3.9755 -2.1527 -0.0135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948043857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:37 Heat of formation + Delta-G solvation = -15.160516 kcal Electronic energy + Delta-G solvation = -26347.606974 eV Core-core repulsion = 22722.322596 eV Total energy + Delta-G solvation = -3625.284378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49592 -40.65224 -39.19985 -36.10669 -34.99425 -34.21551 -33.21284 -32.97438 -31.57293 -30.44757 -28.01686 -27.16474 -26.38056 -24.50660 -23.80386 -22.98396 -22.13255 -21.36059 -20.79243 -18.43966 -17.89826 -17.67395 -17.46411 -17.06379 -16.71985 -15.97955 -15.88161 -15.71033 -15.53363 -15.34386 -14.98177 -14.62361 -14.56238 -14.37207 -14.13986 -13.85461 -13.33297 -13.21405 -13.19070 -12.97520 -12.95605 -12.72525 -12.66801 -12.60869 -12.42710 -12.34639 -12.04598 -11.83308 -11.72155 -11.49328 -11.31256 -10.92613 -10.65642 -10.56708 -10.40615 -9.96534 -9.69001 -8.65198 -7.83550 -5.30518 0.13209 0.36730 1.46533 1.48374 1.58496 1.71064 2.24281 2.52585 2.87227 3.32904 3.40317 3.59338 3.70743 3.84111 3.87238 4.03667 4.05147 4.09291 4.11760 4.28757 4.40629 4.41831 4.58188 4.61751 4.70269 4.71873 4.75018 4.76192 4.78830 4.86141 4.89298 4.96572 5.09096 5.12388 5.16145 5.18652 5.21402 5.33197 5.39576 5.50126 5.56035 5.61307 5.71661 5.73324 5.81663 6.43156 6.67487 7.05167 7.17024 7.37742 7.88940 8.41765 9.23796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.002556 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.822200 B =10951.584428 C =11588.584714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.102 3.898 3 C -0.177 4.177 4 C -0.071 4.071 5 C -0.131 4.131 6 C -0.085 4.085 7 C 0.508 3.492 8 O -0.588 6.588 9 N -0.709 5.709 10 C 0.162 3.838 11 H 0.049 0.951 12 C -0.128 4.128 13 C 0.182 3.818 14 N -0.603 5.603 15 C -0.245 4.245 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.943 5.943 19 Si 0.965 3.035 20 H -0.260 1.260 21 H -0.295 1.295 22 H -0.297 1.297 23 C 0.157 3.843 24 H 0.007 0.993 25 C -0.127 4.127 26 C -0.116 4.116 27 C 0.098 3.902 28 N -0.515 5.515 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.417 0.583 37 H 0.064 0.936 38 H 0.041 0.959 39 H -0.018 1.018 40 H 0.055 0.945 41 H 0.246 0.754 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 -4.227 -21.951 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.036 4.036 3 C -0.196 4.196 4 C -0.097 4.097 5 C -0.133 4.133 6 C -0.125 4.125 7 C 0.295 3.705 8 O -0.468 6.468 9 N -0.361 5.361 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.168 4.168 13 C 0.056 3.944 14 N -0.327 5.327 15 C -0.375 4.375 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.590 5.590 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.222 1.222 22 H -0.225 1.225 23 C 0.050 3.950 24 H 0.025 0.975 25 C -0.184 4.184 26 C -0.155 4.155 27 C -0.058 4.058 28 N -0.225 5.225 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.255 0.745 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.000 1.000 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.069 -4.907 -21.189 23.967 hybrid contribution 1.103 1.528 1.043 2.154 sum -8.966 -3.379 -20.145 22.308 Atomic orbital electron populations 1.20769 0.87094 1.03938 1.03959 1.21838 0.98516 0.88516 0.94683 1.22239 0.94986 1.00004 1.02381 1.21810 0.95011 0.98479 0.94406 1.20509 0.96479 0.94441 1.01914 1.20645 0.90778 1.08577 0.92503 1.21243 0.82110 0.74916 0.92186 1.90744 1.56577 1.51128 1.48344 1.46009 1.07100 1.74416 1.08565 1.20596 0.95606 0.95485 0.82641 0.93273 1.22354 0.99264 0.97014 0.98214 1.20544 0.86116 0.96504 0.91260 1.44465 1.08878 1.11539 1.67817 1.19615 0.87494 1.19249 1.11142 0.90022 1.25908 0.99111 1.03624 0.96846 1.70208 1.25951 1.37257 1.25632 0.85233 0.79898 0.78228 0.77292 1.18381 1.22197 1.22480 1.20670 0.96376 0.85623 0.92288 0.97534 1.21713 0.95146 1.00335 1.01210 1.22161 0.94366 1.01136 0.97872 1.22867 0.89344 0.98834 0.94803 1.67511 1.10518 1.30552 1.13934 0.89030 0.91303 0.89053 0.82447 0.83284 0.84718 0.84313 0.74518 0.91727 0.94052 0.99970 0.92611 0.94495 0.94309 0.90406 0.92432 0.90302 0.89185 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 10.17 71.24 0.72 -0.78 16 2 C 0.10 2.23 6.78 42.56 0.29 2.52 16 3 C -0.18 -3.42 9.74 22.36 0.22 -3.20 16 4 C -0.07 -1.43 9.86 22.47 0.22 -1.21 16 5 C -0.13 -2.72 4.39 -19.77 -0.09 -2.80 16 6 C -0.09 -1.27 5.86 29.10 0.17 -1.10 16 7 C 0.51 12.90 7.79 87.66 0.68 13.59 16 8 O -0.59 -22.01 15.70 -3.03 -0.05 -22.06 16 9 N -0.71 -16.42 5.08 -442.41 -2.25 -18.66 16 10 C 0.16 5.31 2.41 45.02 0.11 5.42 16 11 H 0.05 1.96 7.58 -2.39 -0.02 1.94 16 12 C -0.13 -5.06 5.67 30.82 0.17 -4.89 16 13 C 0.18 9.22 5.31 86.51 0.46 9.68 16 14 N -0.60 -29.68 2.98 -674.38 -2.01 -31.70 16 15 C -0.24 -12.98 8.60 84.03 0.72 -12.26 16 16 H 0.08 4.09 6.21 -2.91 -0.02 4.07 16 17 C -0.06 -3.39 4.96 84.86 0.42 -2.97 16 18 N -0.94 -57.24 11.13 21.65 0.24 -57.00 16 19 Si 0.96 44.81 29.58 68.60 2.03 46.84 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 23 C 0.16 6.15 3.49 44.98 0.16 6.31 16 24 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 25 C -0.13 -4.29 7.94 71.98 0.57 -3.71 16 26 C -0.12 -3.42 4.84 30.68 0.15 -3.27 16 27 C 0.10 2.28 10.86 84.67 0.92 3.20 16 28 N -0.52 -13.33 10.27 -183.88 -1.89 -15.22 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.13 1.21 8.10 -2.39 -0.02 1.19 16 35 H 0.14 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.42 6.12 8.60 -92.71 -0.80 5.33 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.06 3.19 6.06 -2.39 -0.01 3.17 16 41 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 42 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16 43 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.06 1.90 7.45 -2.39 -0.02 1.88 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -78.15 378.29 2.14 -76.01 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.16 Total: 17.26 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.90 Total: 4.53 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.91 Total: -122.59 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.15 2.14 -76.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948043857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -78.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds