Wall clock time and date at job start Tue Mar 31 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 119.46034 * 2 1 4 4 C 1.38358 * 119.30260 * 179.70244 * 3 2 1 5 5 C 1.40027 * 118.28935 * 0.53642 * 4 3 2 6 6 C 1.47836 * 120.56242 * 179.73623 * 5 4 3 7 7 O 1.21554 * 119.99937 * 173.73013 * 6 5 4 8 8 N 1.34775 * 119.99871 * 353.72621 * 6 5 4 9 9 C 1.46499 * 119.99929 * 180.27450 * 8 6 5 10 10 H 1.09001 * 109.47338 * 324.72842 * 9 8 6 11 11 C 1.53001 * 109.46949 * 84.72877 * 9 8 6 12 12 C 1.52993 * 109.47466 * 59.99937 * 11 9 8 13 13 C 1.53004 * 109.47023 * 59.99961 * 12 11 9 14 14 C 1.53003 * 109.47228 * 299.99983 * 13 12 11 15 15 H 1.08999 * 109.46897 * 300.00366 * 14 13 12 16 16 N 1.46496 * 109.47232 * 179.97438 * 14 13 12 17 17 C 1.36940 * 119.99925 * 85.00422 * 16 14 13 18 18 H 1.08002 * 119.99549 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47168 * 89.99607 * 21 19 17 23 23 H 1.48494 * 109.47016 * 209.99829 * 21 19 17 24 24 H 1.48504 * 109.46762 * 329.99838 * 21 19 17 25 25 C 1.53001 * 109.46893 * 60.00048 * 14 13 12 26 26 C 1.39525 * 118.88038 * 359.46581 * 5 4 3 27 27 C 1.50695 * 119.71935 * 180.25022 * 26 5 4 28 28 N 1.31699 * 120.56263 * 0.27457 * 26 5 4 29 29 H 1.09000 * 109.47170 * 270.02244 * 1 2 3 30 30 H 1.09005 * 109.47398 * 30.01831 * 1 2 3 31 31 H 1.08998 * 109.47413 * 150.01660 * 1 2 3 32 32 H 1.07995 * 120.35240 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.86009 * 180.29990 * 4 3 2 34 34 H 0.96999 * 120.00019 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47006 * 299.99907 * 11 9 8 37 37 H 1.08996 * 109.47520 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47105 * 300.00418 * 12 11 9 39 39 H 1.08999 * 109.47480 * 59.99992 * 13 12 11 40 40 H 1.09001 * 109.47110 * 180.02562 * 13 12 11 41 41 H 0.96998 * 120.00288 * 265.00468 * 16 14 13 42 42 H 0.96994 * 119.99942 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47309 * 180.02562 * 25 14 13 44 44 H 1.09002 * 109.47195 * 59.99676 * 25 14 13 45 45 H 1.08996 * 109.47345 * 83.47513 * 27 26 5 46 46 H 1.08999 * 109.47388 * 203.47617 * 27 26 5 47 47 H 1.08997 * 109.47234 * 323.47704 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.2312 -0.0340 0.0009 6 6 5.7083 -0.0966 0.0013 7 8 6.2711 -1.1684 0.1116 8 7 6.4308 1.0346 -0.1207 9 6 7.8944 0.9719 -0.1263 10 1 8.2269 0.1830 0.5484 11 6 8.3865 0.6718 -1.5436 12 6 7.9199 1.7790 -2.4907 13 6 8.4897 3.1210 -2.0264 14 6 7.9975 3.4211 -0.6091 15 1 6.9085 3.4677 -0.6050 16 7 8.5435 4.7057 -0.1643 17 6 7.9044 5.8716 -0.4920 18 1 6.9980 5.8441 -1.0786 19 6 8.4220 7.0888 -0.0710 20 7 9.5269 7.1224 0.6435 21 14 7.5505 8.6794 -0.5185 22 1 6.5624 9.0165 0.5376 23 1 8.5468 9.7746 -0.6321 24 1 6.8494 8.5112 -1.8168 25 6 8.4642 2.3138 0.3380 26 6 3.4716 -1.2043 0.0008 27 6 4.1627 -2.5435 0.0008 28 7 2.1558 -1.1486 0.0004 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6444 2.1381 0.0004 33 1 4.1275 2.1264 0.0113 34 1 5.9816 1.8898 -0.2083 35 1 9.4755 0.6247 -1.5476 36 1 7.9806 -0.2843 -1.8743 37 1 8.2709 1.5655 -3.5002 38 1 6.8309 1.8257 -2.4864 39 1 9.5786 3.0744 -2.0305 40 1 8.1568 3.9099 -2.7009 41 1 9.3578 4.7304 0.3622 42 1 9.8884 7.9729 0.9379 43 1 8.1132 2.5273 1.3476 44 1 9.5532 2.2671 0.3338 45 1 4.4331 -2.8129 1.0217 46 1 3.4917 -3.2986 -0.4086 47 1 5.0632 -2.4876 -0.6108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981535382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:21 Heat of formation + Delta-G solvation = -6.878886 kcal Electronic energy + Delta-G solvation = -26835.784189 eV Core-core repulsion = 23210.858929 eV Total energy + Delta-G solvation = -3624.925260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01722 -39.65987 -37.91214 -34.66612 -33.71150 -33.64071 -32.56118 -31.19724 -29.73725 -29.22230 -27.95891 -27.20118 -23.82403 -23.24338 -22.65888 -21.98079 -21.23469 -20.89573 -18.85978 -18.03333 -17.20750 -16.72099 -15.76982 -15.51854 -15.47948 -15.16265 -14.73589 -14.55494 -14.42775 -13.79322 -13.66818 -13.52643 -13.39454 -13.20298 -13.08694 -12.55682 -12.49674 -12.42693 -12.14066 -12.10976 -12.08329 -11.77423 -11.76413 -11.04705 -10.93637 -10.82515 -10.42238 -10.24046 -10.22487 -10.08252 -10.01202 -9.79679 -9.57317 -9.49443 -9.14959 -8.95046 -8.82629 -7.02691 -5.82940 -3.12182 0.46685 0.98939 2.77955 3.13596 3.38003 3.43345 3.45326 3.61204 3.93788 4.39858 4.49151 4.51318 4.56949 4.77873 4.96787 5.06098 5.12690 5.14543 5.22317 5.26515 5.35897 5.44454 5.53778 5.54731 5.64179 5.65832 5.68841 5.71796 5.77387 5.82918 5.92876 5.95429 6.01670 6.05052 6.10640 6.21620 6.25603 6.44209 6.46679 6.52308 6.62649 6.66922 6.88578 7.03215 7.50282 7.62468 7.73057 8.18676 8.35382 9.46677 10.03937 10.38337 11.39566 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003458 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.647173 B = 8095.176483 C = 9663.561551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.153 3.847 3 C -0.187 4.187 4 C -0.034 4.034 5 C -0.197 4.197 6 C 0.563 3.437 7 O -0.535 6.535 8 N -0.711 5.711 9 C 0.152 3.848 10 H 0.086 0.914 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.137 4.137 14 C 0.181 3.819 15 H 0.039 0.961 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.134 4.134 26 C 0.193 3.807 27 C -0.108 4.108 28 N -0.493 5.493 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 -15.695 -2.269 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.015 3.985 3 C -0.207 4.207 4 C -0.060 4.060 5 C -0.202 4.202 6 C 0.350 3.650 7 O -0.414 6.414 8 N -0.363 5.363 9 C 0.048 3.952 10 H 0.104 0.896 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.177 4.177 14 C 0.071 3.929 15 H 0.057 0.943 16 N -0.365 5.365 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.173 4.173 26 C 0.054 3.946 27 C -0.165 4.165 28 N -0.204 5.204 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.943 -17.046 -2.234 21.520 hybrid contribution 0.097 2.448 -0.127 2.453 sum -12.846 -14.598 -2.361 19.588 Atomic orbital electron populations 1.20785 0.88507 1.03760 1.03385 1.21527 0.97245 0.88287 0.91469 1.21909 0.94545 0.99589 1.04677 1.21847 0.94825 0.97468 0.91823 1.20803 0.94695 0.94843 1.09875 1.17963 0.86124 0.84346 0.76558 1.90704 1.72311 1.28167 1.50198 1.46136 1.07644 1.09205 1.73354 1.20994 0.78357 0.98651 0.97240 0.89554 1.21900 1.01065 0.98703 0.94907 1.21507 1.00272 0.95540 0.98071 1.22292 1.00645 0.95086 0.99721 1.20133 0.95880 0.85890 0.90981 0.94333 1.42418 1.30357 0.99897 1.63805 1.19204 1.05734 0.84540 1.27708 0.91269 1.24739 0.97722 0.97653 1.00705 1.69655 1.21898 1.25023 1.41372 0.86226 0.78513 0.83729 0.77924 1.21722 1.21759 1.20775 1.22143 1.01596 0.93266 1.00304 1.21500 0.88493 0.95435 0.89129 1.21041 1.00574 0.90681 1.04210 1.67490 1.09065 1.29070 1.14779 0.90013 0.90347 0.90242 0.84070 0.84107 0.76190 0.91031 0.92008 0.92798 0.92753 0.92469 0.92081 0.78213 0.93463 0.91197 0.90360 0.89960 0.91461 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.16 36.00 0.37 -0.37 16 2 C 0.15 1.57 6.78 -82.51 -0.56 1.01 16 3 C -0.19 -1.80 9.72 -39.49 -0.38 -2.18 16 4 C -0.03 -0.36 9.63 -38.87 -0.37 -0.73 16 5 C -0.20 -2.46 5.89 -104.82 -0.62 -3.08 16 6 C 0.56 7.65 7.67 -12.33 -0.09 7.55 16 7 O -0.53 -8.25 13.03 5.32 0.07 -8.18 16 8 N -0.71 -9.09 4.19 -54.75 -0.23 -9.32 16 9 C 0.15 2.03 2.78 -67.93 -0.19 1.84 16 10 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 11 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 12 C -0.12 -1.58 5.77 -26.73 -0.15 -1.73 16 13 C -0.14 -2.29 5.50 -26.73 -0.15 -2.43 16 14 C 0.18 3.25 2.60 -67.93 -0.18 3.07 16 15 H 0.04 0.68 6.44 -51.93 -0.33 0.35 16 16 N -0.72 -17.03 5.12 -53.43 -0.27 -17.30 16 17 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C -0.13 -2.03 5.08 -26.73 -0.14 -2.17 16 26 C 0.19 2.46 6.82 -82.17 -0.56 1.90 16 27 C -0.11 -1.26 8.88 36.00 0.32 -0.94 16 28 N -0.49 -6.11 10.17 -5.42 -0.06 -6.17 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.30 6.57 -52.49 -0.34 0.95 16 34 H 0.40 4.86 5.01 -40.82 -0.20 4.65 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.73 7.60 -51.93 -0.39 0.34 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.38 9.73 7.80 -40.82 -0.32 9.41 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.10 1.31 5.84 -51.93 -0.30 1.00 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -30.90 373.43 -9.60 -40.50 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -7.33 Total: 11.78 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.10 Total: -6.97 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.17 Total: -59.41 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.07 Total: -8.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.90 -9.60 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981535382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.620 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds