Wall clock time and date at job start Tue Mar 31 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38355 * 119.46034 * 2 1 4 4 C 1.38358 * 119.30260 * 179.70244 * 3 2 1 5 5 C 1.40027 * 118.28935 * 0.53642 * 4 3 2 6 6 C 1.47836 * 120.56242 * 179.73623 * 5 4 3 7 7 O 1.21554 * 119.99937 * 173.73013 * 6 5 4 8 8 N 1.34775 * 119.99871 * 353.72621 * 6 5 4 9 9 C 1.46499 * 119.99929 * 180.27450 * 8 6 5 10 10 H 1.09001 * 109.47338 * 324.72842 * 9 8 6 11 11 C 1.53001 * 109.46949 * 84.72877 * 9 8 6 12 12 C 1.52993 * 109.47466 * 59.99937 * 11 9 8 13 13 C 1.53004 * 109.47023 * 59.99961 * 12 11 9 14 14 C 1.53003 * 109.47228 * 299.99983 * 13 12 11 15 15 H 1.08999 * 109.46897 * 300.00366 * 14 13 12 16 16 N 1.46496 * 109.47232 * 179.97438 * 14 13 12 17 17 C 1.36940 * 119.99925 * 85.00422 * 16 14 13 18 18 H 1.08002 * 119.99549 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00110 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00157 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47168 * 89.99607 * 21 19 17 23 23 H 1.48494 * 109.47016 * 209.99829 * 21 19 17 24 24 H 1.48504 * 109.46762 * 329.99838 * 21 19 17 25 25 C 1.53001 * 109.46893 * 60.00048 * 14 13 12 26 26 C 1.39525 * 118.88038 * 359.46581 * 5 4 3 27 27 C 1.50695 * 119.71935 * 180.25022 * 26 5 4 28 28 N 1.31699 * 120.56263 * 0.27457 * 26 5 4 29 29 H 1.09000 * 109.47170 * 270.02244 * 1 2 3 30 30 H 1.09005 * 109.47398 * 30.01831 * 1 2 3 31 31 H 1.08998 * 109.47413 * 150.01660 * 1 2 3 32 32 H 1.07995 * 120.35240 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.86009 * 180.29990 * 4 3 2 34 34 H 0.96999 * 120.00019 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47006 * 299.99907 * 11 9 8 37 37 H 1.08996 * 109.47520 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47105 * 300.00418 * 12 11 9 39 39 H 1.08999 * 109.47480 * 59.99992 * 13 12 11 40 40 H 1.09001 * 109.47110 * 180.02562 * 13 12 11 41 41 H 0.96998 * 120.00288 * 265.00468 * 16 14 13 42 42 H 0.96994 * 119.99942 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.47309 * 180.02562 * 25 14 13 44 44 H 1.09002 * 109.47195 * 59.99676 * 25 14 13 45 45 H 1.08996 * 109.47345 * 83.47513 * 27 26 5 46 46 H 1.08999 * 109.47388 * 203.47617 * 27 26 5 47 47 H 1.08997 * 109.47234 * 323.47704 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.2312 -0.0340 0.0009 6 6 5.7083 -0.0966 0.0013 7 8 6.2711 -1.1684 0.1116 8 7 6.4308 1.0346 -0.1207 9 6 7.8944 0.9719 -0.1263 10 1 8.2269 0.1830 0.5484 11 6 8.3865 0.6718 -1.5436 12 6 7.9199 1.7790 -2.4907 13 6 8.4897 3.1210 -2.0264 14 6 7.9975 3.4211 -0.6091 15 1 6.9085 3.4677 -0.6050 16 7 8.5435 4.7057 -0.1643 17 6 7.9044 5.8716 -0.4920 18 1 6.9980 5.8441 -1.0786 19 6 8.4220 7.0888 -0.0710 20 7 9.5269 7.1224 0.6435 21 14 7.5505 8.6794 -0.5185 22 1 6.5624 9.0165 0.5376 23 1 8.5468 9.7746 -0.6321 24 1 6.8494 8.5112 -1.8168 25 6 8.4642 2.3138 0.3380 26 6 3.4716 -1.2043 0.0008 27 6 4.1627 -2.5435 0.0008 28 7 2.1558 -1.1486 0.0004 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6444 2.1381 0.0004 33 1 4.1275 2.1264 0.0113 34 1 5.9816 1.8898 -0.2083 35 1 9.4755 0.6247 -1.5476 36 1 7.9806 -0.2843 -1.8743 37 1 8.2709 1.5655 -3.5002 38 1 6.8309 1.8257 -2.4864 39 1 9.5786 3.0744 -2.0305 40 1 8.1568 3.9099 -2.7009 41 1 9.3578 4.7304 0.3622 42 1 9.8884 7.9729 0.9379 43 1 8.1132 2.5273 1.3476 44 1 9.5532 2.2671 0.3338 45 1 4.4331 -2.8129 1.0217 46 1 3.4917 -3.2986 -0.4086 47 1 5.0632 -2.4876 -0.6108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981535382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:21 Heat of formation + Delta-G solvation = -25.271558 kcal Electronic energy + Delta-G solvation = -26836.581755 eV Core-core repulsion = 23210.858929 eV Total energy + Delta-G solvation = -3625.722826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95100 -40.70718 -39.11948 -36.20399 -34.85923 -34.52445 -33.66470 -32.86568 -30.92847 -29.98027 -29.53057 -28.07920 -25.68148 -24.12100 -23.66360 -23.08312 -22.49363 -22.00732 -20.11596 -19.30178 -18.76698 -17.69537 -17.03050 -16.51900 -16.44756 -16.32263 -16.08382 -15.80063 -15.48964 -15.18446 -14.98320 -14.77244 -14.44146 -14.24421 -14.05658 -13.81247 -13.51968 -13.39256 -13.10122 -13.02750 -12.97941 -12.88156 -12.85983 -12.81514 -12.79034 -12.22103 -12.05632 -11.94402 -11.59517 -11.45863 -11.01676 -10.99180 -10.90096 -10.82692 -10.43665 -10.13386 -9.77005 -8.97539 -7.91565 -5.19447 -0.39700 0.16393 1.49225 1.49990 1.58103 1.80473 2.10340 2.57840 2.73267 3.16809 3.42130 3.56636 3.65079 3.70479 3.74416 3.88796 3.92980 4.01046 4.28537 4.30165 4.35050 4.36734 4.55324 4.55927 4.63497 4.67084 4.72320 4.73613 4.78707 4.80366 4.81890 4.94603 4.96802 5.07969 5.10366 5.15517 5.19008 5.23292 5.28876 5.37795 5.50756 5.51507 5.56258 5.65221 5.66682 6.30594 6.46957 6.88966 7.14676 7.37032 8.13691 8.35748 9.31986 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.003458 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.647173 B = 8095.176483 C = 9663.561551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.184 4.184 4 C -0.037 4.037 5 C -0.214 4.214 6 C 0.564 3.436 7 O -0.557 6.557 8 N -0.707 5.707 9 C 0.160 3.840 10 H 0.087 0.913 11 C -0.121 4.121 12 C -0.105 4.105 13 C -0.128 4.128 14 C 0.178 3.822 15 H 0.046 0.954 16 N -0.737 5.737 17 C -0.233 4.233 18 H 0.078 0.922 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.269 1.269 25 C -0.122 4.122 26 C 0.176 3.824 27 C -0.102 4.102 28 N -0.513 5.513 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 -15.845 -3.051 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.203 4.203 4 C -0.063 4.063 5 C -0.219 4.219 6 C 0.352 3.648 7 O -0.438 6.438 8 N -0.359 5.359 9 C 0.055 3.945 10 H 0.105 0.895 11 C -0.160 4.160 12 C -0.143 4.143 13 C -0.168 4.168 14 C 0.069 3.931 15 H 0.063 0.937 16 N -0.376 5.376 17 C -0.365 4.365 18 H 0.096 0.904 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.228 1.228 24 H -0.194 1.194 25 C -0.161 4.161 26 C 0.038 3.962 27 C -0.159 4.159 28 N -0.224 5.224 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.189 0.811 33 H 0.172 0.828 34 H 0.243 0.757 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.038 -17.231 -3.046 23.072 hybrid contribution 0.656 2.430 0.105 2.519 sum -14.382 -14.801 -2.941 20.846 Atomic orbital electron populations 1.20895 0.86061 1.04845 1.04402 1.22168 0.98924 0.88019 0.90145 1.22269 0.94171 1.00629 1.03252 1.22071 0.95613 0.97230 0.91351 1.20748 0.93929 0.95686 1.11522 1.18137 0.86674 0.83997 0.75956 1.90693 1.72867 1.28928 1.51281 1.46056 1.07313 1.09305 1.73224 1.20868 0.78709 0.97258 0.97629 0.89543 1.21856 1.01645 0.98378 0.94110 1.21409 1.00385 0.93691 0.98841 1.22116 1.00158 0.96321 0.98207 1.20362 0.96082 0.84459 0.92157 0.93656 1.42638 1.29944 1.01242 1.63798 1.19602 1.05425 0.85507 1.25983 0.90434 1.25496 0.98794 1.00788 1.01766 1.69810 1.23751 1.25105 1.43474 0.85231 0.77213 0.79800 0.78088 1.21465 1.22776 1.19384 1.21982 1.01702 0.93193 0.99194 1.21648 0.89007 0.95792 0.89779 1.20944 1.00206 0.90898 1.03814 1.67531 1.08858 1.30367 1.15611 0.88853 0.88031 0.90414 0.81072 0.82818 0.75734 0.90160 0.91756 0.91436 0.92267 0.93284 0.94046 0.79652 0.94230 0.91911 0.90269 0.90256 0.90602 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.16 71.23 0.72 -0.42 16 2 C 0.15 2.68 6.78 42.57 0.29 2.97 16 3 C -0.18 -3.03 9.72 22.33 0.22 -2.81 16 4 C -0.04 -0.72 9.63 22.73 0.22 -0.50 16 5 C -0.21 -5.14 5.89 -19.99 -0.12 -5.26 16 6 C 0.56 14.87 7.67 86.78 0.67 15.53 16 7 O -0.56 -16.98 13.03 -3.88 -0.05 -17.03 16 8 N -0.71 -17.13 4.19 -445.41 -1.86 -18.99 16 9 C 0.16 4.06 2.78 44.99 0.13 4.18 16 10 H 0.09 2.27 7.58 -2.39 -0.02 2.25 16 11 C -0.12 -2.90 5.60 30.59 0.17 -2.73 16 12 C -0.11 -2.64 5.77 30.59 0.18 -2.47 16 13 C -0.13 -4.13 5.50 30.60 0.17 -3.96 16 14 C 0.18 6.20 2.60 44.99 0.12 6.32 16 15 H 0.05 1.53 6.44 -2.39 -0.02 1.52 16 16 N -0.74 -34.61 5.12 -322.94 -1.65 -36.26 16 17 C -0.23 -12.19 9.93 84.03 0.83 -11.36 16 18 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.08 -4.22 5.50 84.86 0.47 -3.76 16 20 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 21 Si 0.97 44.55 29.55 68.60 2.03 46.57 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.12 -3.59 5.08 30.60 0.16 -3.43 16 26 C 0.18 4.40 6.82 42.89 0.29 4.69 16 27 C -0.10 -2.37 8.88 71.23 0.63 -1.73 16 28 N -0.51 -12.13 10.17 -171.06 -1.74 -13.87 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.65 8.07 -2.38 -0.02 0.63 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.15 2.49 6.57 -2.91 -0.02 2.47 16 34 H 0.40 9.14 5.01 -92.71 -0.46 8.67 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.37 19.11 7.80 -92.71 -0.72 18.39 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.09 2.35 5.84 -2.39 -0.01 2.34 16 Total: -1.00 -66.38 373.43 1.94 -64.45 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.20 Total: 37.51 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.14 Total: -4.74 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -4.98 Total: -126.76 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.38 1.94 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981535382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.177 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds