Wall clock time and date at job start Tue Mar 31 2020 11:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35531 * 125.68335 * 2 1 4 4 C 1.35450 * 108.87120 * 180.30519 * 3 2 1 5 5 C 1.39832 * 107.86540 * 359.72603 * 4 3 2 6 6 C 1.37654 * 125.67269 * 179.84139 * 2 1 3 7 7 C 1.46680 * 126.23615 * 359.96626 * 6 2 1 8 8 O 1.21693 * 119.99597 * 344.96347 * 7 6 2 9 9 N 1.34772 * 119.99914 * 164.96610 * 7 6 2 10 10 C 1.48104 * 127.84764 * 1.44189 * 9 7 6 11 11 C 1.54319 * 104.71652 * 219.78311 * 10 9 7 12 12 C 1.53003 * 112.07436 * 97.95889 * 11 10 9 13 13 C 1.54049 * 108.91462 * 223.84354 * 11 10 9 14 14 N 1.47212 * 106.25355 * 131.01585 * 13 11 10 15 15 C 1.36933 * 126.70363 * 148.60945 * 14 13 11 16 16 H 1.08004 * 119.99986 * 343.72708 * 15 14 13 17 17 C 1.38806 * 119.99899 * 163.72111 * 15 14 13 18 18 N 1.31621 * 120.00331 * 350.46466 * 17 15 14 19 19 Si 1.86805 * 120.00147 * 170.46414 * 17 15 14 20 20 H 1.48501 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47324 * 119.99965 * 19 17 15 22 22 H 1.48502 * 109.47012 * 240.00292 * 19 17 15 23 23 C 1.47205 * 106.59075 * 328.34986 * 14 13 11 24 24 C 1.53753 * 106.40812 * 31.56765 * 23 14 13 25 25 C 1.52997 * 112.06550 * 104.50797 * 24 23 14 26 26 C 1.48116 * 127.84307 * 181.44521 * 9 7 6 27 27 H 1.08995 * 109.47047 * 264.42369 * 1 2 3 28 28 H 1.09002 * 109.46500 * 24.42517 * 1 2 3 29 29 H 1.09004 * 109.47106 * 144.41845 * 1 2 3 30 30 H 1.07996 * 125.56153 * 0.06768 * 3 2 1 31 31 H 1.07997 * 126.06497 * 179.70152 * 4 3 2 32 32 H 1.08006 * 126.45496 * 179.97438 * 5 4 3 33 33 H 1.08998 * 110.39222 * 338.59045 * 10 9 7 34 34 H 1.09000 * 110.38845 * 100.86402 * 10 9 7 35 35 H 1.08995 * 109.47106 * 302.41369 * 12 11 10 36 36 H 1.08993 * 109.46868 * 62.41390 * 12 11 10 37 37 H 1.08992 * 109.46892 * 182.41259 * 12 11 10 38 38 H 1.09002 * 110.21465 * 11.79393 * 13 11 10 39 39 H 1.08994 * 110.07865 * 250.16553 * 13 11 10 40 40 H 0.97004 * 120.00089 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.06428 * 150.80881 * 23 14 13 42 42 H 1.09001 * 110.06782 * 272.33035 * 23 14 13 43 43 H 1.09001 * 109.47217 * 61.01906 * 25 24 23 44 44 H 1.09008 * 109.47367 * 181.01385 * 25 24 23 45 45 H 1.08995 * 109.47421 * 301.01067 * 25 24 23 46 46 H 1.09003 * 110.38657 * 21.41211 * 26 9 7 47 47 H 1.08992 * 110.38701 * 259.02697 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7091 -0.0068 5 6 3.5779 -0.6890 -0.0049 6 6 2.2678 -1.1182 0.0031 7 6 1.8123 -2.5125 0.0077 8 8 0.6560 -2.7739 0.2824 9 7 2.6744 -3.5040 -0.2924 10 6 4.1139 -3.3882 -0.6208 11 6 4.3395 -4.4056 -1.7589 12 6 4.3173 -3.7412 -3.1370 13 6 5.6412 -5.1822 -1.4838 14 7 5.3123 -6.6080 -1.6451 15 6 6.1513 -7.5968 -2.0851 16 1 7.0666 -7.3399 -2.5976 17 6 5.8254 -8.9291 -1.8722 18 7 4.8147 -9.2425 -1.0895 19 14 6.8214 -10.2775 -2.6965 20 1 7.8954 -9.6664 -3.5201 21 1 7.4280 -11.1495 -1.6589 22 1 5.9319 -11.0884 -3.5664 23 6 3.9071 -6.7643 -1.2351 24 6 3.2014 -5.4457 -1.5918 25 6 2.3256 -5.5817 -2.8389 26 6 2.3973 -4.9570 -0.3687 27 1 -0.3633 -0.0999 1.0228 28 1 -0.3632 0.9357 -0.4250 29 1 -0.3633 -0.8358 -0.5980 30 1 1.9084 2.1235 0.0010 31 1 4.4133 1.3609 -0.0131 32 1 4.4583 -1.3147 -0.0094 33 1 4.3456 -2.3793 -0.9621 34 1 4.7230 -3.6444 0.2461 35 1 3.3662 -3.2278 -3.2775 36 1 5.1326 -3.0212 -3.2063 37 1 4.4373 -4.5014 -3.9088 38 1 5.9864 -4.9907 -0.4678 39 1 6.4088 -4.8920 -2.2011 40 1 4.5867 -10.1737 -0.9410 41 1 3.4494 -7.5920 -1.7766 42 1 3.8484 -6.9413 -0.1611 43 1 1.5505 -6.3268 -2.6591 44 1 1.8611 -4.6214 -3.0633 45 1 2.9408 -5.8937 -3.6828 46 1 1.3322 -5.1331 -0.5196 47 1 2.7413 -5.4572 0.5364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982214090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:58 Heat of formation + Delta-G solvation = 62.970719 kcal Electronic energy + Delta-G solvation = -28048.386360 eV Core-core repulsion = 24426.490006 eV Total energy + Delta-G solvation = -3621.896354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49284 -40.17546 -38.11056 -35.11770 -33.22650 -32.57726 -31.80372 -30.58597 -29.53075 -27.25620 -26.69224 -25.67894 -25.58091 -24.98439 -22.78139 -21.17961 -20.81634 -20.11206 -19.06838 -17.95729 -17.16948 -16.48916 -16.17380 -15.71705 -15.16568 -15.15264 -14.59403 -14.47300 -13.91730 -13.65447 -13.52106 -13.31017 -13.25002 -13.15795 -12.62844 -12.53606 -12.41385 -12.21830 -12.07287 -11.92963 -11.76492 -11.62777 -11.27063 -11.06916 -10.85002 -10.71369 -10.56169 -10.14528 -9.96325 -9.90872 -9.77960 -9.66594 -9.57029 -8.83246 -8.62771 -8.56130 -8.21993 -6.81233 -5.79512 -3.13330 1.48886 2.51716 2.67734 3.31504 3.37758 3.42574 3.44356 3.46290 4.46386 4.54409 4.64805 4.83001 4.85746 5.02387 5.08538 5.16801 5.30088 5.31833 5.43622 5.47749 5.55697 5.59599 5.62967 5.70657 5.77774 5.87639 5.98926 6.02984 6.04283 6.13146 6.20513 6.25235 6.29723 6.32982 6.47819 6.50258 6.65352 6.69510 6.76682 6.82018 6.89523 6.95439 7.10789 7.38395 7.55445 7.73006 7.74384 8.23584 8.27187 9.14544 9.76843 10.49807 11.34633 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.003427 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.746184 B = 8169.021607 C = 8608.519578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.414 5.414 3 C 0.007 3.993 4 C -0.208 4.208 5 C -0.154 4.154 6 C -0.040 4.040 7 C 0.603 3.397 8 O -0.560 6.560 9 N -0.603 5.603 10 C 0.092 3.908 11 C -0.080 4.080 12 C -0.120 4.120 13 C 0.143 3.857 14 N -0.591 5.591 15 C -0.230 4.230 16 H 0.076 0.924 17 C -0.003 4.003 18 N -0.913 5.913 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.180 3.820 24 C -0.092 4.092 25 C -0.118 4.118 26 C 0.120 3.880 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 19.293 0.192 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.087 5.087 3 C -0.128 4.128 4 C -0.232 4.232 5 C -0.180 4.180 6 C -0.154 4.154 7 C 0.393 3.607 8 O -0.441 6.441 9 N -0.334 5.334 10 C -0.031 4.031 11 C -0.082 4.082 12 C -0.178 4.178 13 C 0.016 3.984 14 N -0.315 5.315 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.201 4.201 18 N -0.559 5.559 19 Si 0.739 3.261 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.054 3.946 24 C -0.094 4.094 25 C -0.175 4.175 26 C -0.001 4.001 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.509 18.942 0.363 20.033 hybrid contribution 0.498 -0.688 -0.220 0.878 sum -6.011 18.254 0.143 19.219 Atomic orbital electron populations 1.22138 0.76288 1.04136 1.04171 1.43838 1.06708 1.05017 1.53160 1.21973 0.90786 0.91320 1.08683 1.20854 0.95933 0.95120 1.11320 1.21916 0.95118 0.95498 1.05431 1.20051 0.90491 0.87427 1.17399 1.16511 0.84226 0.82758 0.77163 1.90779 1.17825 1.84300 1.51185 1.48642 1.10555 1.07088 1.67094 1.23238 0.80823 1.00996 0.98030 1.22310 0.97334 0.94295 0.94297 1.21617 1.00535 0.99811 0.95799 1.21474 0.92942 0.86299 0.97696 1.44434 1.08172 1.02090 1.76807 1.19017 1.02381 0.84880 1.29510 0.90653 1.24882 0.98846 0.97282 0.99044 1.69943 1.30234 1.16911 1.38861 0.86103 0.79217 0.82059 0.78702 1.20391 1.21761 1.21687 1.21230 0.84208 0.91467 0.97690 1.22505 0.94480 0.98317 0.94096 1.21602 0.98638 1.00154 0.97119 1.22650 1.00867 0.78067 0.98558 0.90469 0.90006 0.88916 0.81635 0.84062 0.82544 0.88766 0.90370 0.93232 0.93072 0.91754 0.96106 0.93713 0.93670 0.90804 0.95536 0.92916 0.93790 0.91913 0.90382 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.29 59.85 0.62 1.32 16 2 N -0.41 -4.95 3.16 -120.23 -0.38 -5.33 16 3 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 4 C -0.21 -2.18 10.81 -39.98 -0.43 -2.61 16 5 C -0.15 -1.90 9.17 -39.12 -0.36 -2.26 16 6 C -0.04 -0.57 6.80 -81.98 -0.56 -1.13 16 7 C 0.60 9.95 7.82 -12.85 -0.10 9.85 16 8 O -0.56 -10.51 15.42 5.20 0.08 -10.42 16 9 N -0.60 -9.58 3.31 -170.99 -0.57 -10.15 16 10 C 0.09 1.31 5.05 -2.47 -0.01 1.30 16 11 C -0.08 -1.30 1.09 -152.17 -0.17 -1.47 16 12 C -0.12 -1.75 7.54 37.16 0.28 -1.47 16 13 C 0.14 2.77 6.48 -3.11 -0.02 2.75 16 14 N -0.59 -14.30 3.38 -171.00 -0.58 -14.87 16 15 C -0.23 -6.15 10.27 -15.06 -0.15 -6.31 16 16 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 17 C 0.00 -0.09 5.37 -17.43 -0.09 -0.18 16 18 N -0.91 -26.13 10.98 55.49 0.61 -25.52 16 19 Si 0.91 21.55 29.56 -169.99 -5.03 16.52 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 C 0.18 4.10 4.79 -3.27 -0.02 4.09 16 24 C -0.09 -1.64 1.08 -152.33 -0.16 -1.81 16 25 C -0.12 -1.98 7.46 37.16 0.28 -1.70 16 26 C 0.12 2.06 6.21 -2.46 -0.02 2.05 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.09 1.04 7.07 -51.93 -0.37 0.68 16 30 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.16 1.76 5.10 -52.48 -0.27 1.49 16 33 H 0.09 1.18 4.31 -51.93 -0.22 0.95 16 34 H 0.08 1.11 7.15 -51.93 -0.37 0.74 16 35 H 0.05 0.70 7.21 -51.93 -0.37 0.32 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 1.01 7.18 -51.93 -0.37 0.64 16 38 H 0.02 0.41 7.10 -51.93 -0.37 0.04 16 39 H 0.04 0.84 7.88 -51.93 -0.41 0.43 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.07 1.90 6.61 -51.93 -0.34 1.56 16 42 H 0.03 0.66 7.10 -51.93 -0.37 0.29 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.68 7.21 -51.92 -0.37 0.31 16 45 H 0.06 1.10 7.20 -51.93 -0.37 0.73 16 46 H 0.08 1.35 7.63 -51.93 -0.40 0.96 16 47 H 0.08 1.38 7.15 -51.93 -0.37 1.01 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -31.77 359.44 -8.62 -40.39 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.06 Total: 1.66 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.11 Total: 2.31 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.92 Total: -55.87 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.77 -8.62 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982214090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.359 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds