Wall clock time and date at job start Tue Mar 31 2020 11:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35531 * 125.68335 * 2 1 4 4 C 1.35450 * 108.87120 * 180.30519 * 3 2 1 5 5 C 1.39832 * 107.86540 * 359.72603 * 4 3 2 6 6 C 1.37654 * 125.67269 * 179.84139 * 2 1 3 7 7 C 1.46680 * 126.23615 * 359.96626 * 6 2 1 8 8 O 1.21693 * 119.99597 * 344.96347 * 7 6 2 9 9 N 1.34772 * 119.99914 * 164.96610 * 7 6 2 10 10 C 1.48104 * 127.84764 * 1.44189 * 9 7 6 11 11 C 1.54319 * 104.71652 * 219.78311 * 10 9 7 12 12 C 1.53003 * 112.07436 * 97.95889 * 11 10 9 13 13 C 1.54049 * 108.91462 * 223.84354 * 11 10 9 14 14 N 1.47212 * 106.25355 * 131.01585 * 13 11 10 15 15 C 1.36933 * 126.70363 * 148.60945 * 14 13 11 16 16 H 1.08004 * 119.99986 * 343.72708 * 15 14 13 17 17 C 1.38806 * 119.99899 * 163.72111 * 15 14 13 18 18 N 1.31621 * 120.00331 * 350.46466 * 17 15 14 19 19 Si 1.86805 * 120.00147 * 170.46414 * 17 15 14 20 20 H 1.48501 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47324 * 119.99965 * 19 17 15 22 22 H 1.48502 * 109.47012 * 240.00292 * 19 17 15 23 23 C 1.47205 * 106.59075 * 328.34986 * 14 13 11 24 24 C 1.53753 * 106.40812 * 31.56765 * 23 14 13 25 25 C 1.52997 * 112.06550 * 104.50797 * 24 23 14 26 26 C 1.48116 * 127.84307 * 181.44521 * 9 7 6 27 27 H 1.08995 * 109.47047 * 264.42369 * 1 2 3 28 28 H 1.09002 * 109.46500 * 24.42517 * 1 2 3 29 29 H 1.09004 * 109.47106 * 144.41845 * 1 2 3 30 30 H 1.07996 * 125.56153 * 0.06768 * 3 2 1 31 31 H 1.07997 * 126.06497 * 179.70152 * 4 3 2 32 32 H 1.08006 * 126.45496 * 179.97438 * 5 4 3 33 33 H 1.08998 * 110.39222 * 338.59045 * 10 9 7 34 34 H 1.09000 * 110.38845 * 100.86402 * 10 9 7 35 35 H 1.08995 * 109.47106 * 302.41369 * 12 11 10 36 36 H 1.08993 * 109.46868 * 62.41390 * 12 11 10 37 37 H 1.08992 * 109.46892 * 182.41259 * 12 11 10 38 38 H 1.09002 * 110.21465 * 11.79393 * 13 11 10 39 39 H 1.08994 * 110.07865 * 250.16553 * 13 11 10 40 40 H 0.97004 * 120.00089 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.06428 * 150.80881 * 23 14 13 42 42 H 1.09001 * 110.06782 * 272.33035 * 23 14 13 43 43 H 1.09001 * 109.47217 * 61.01906 * 25 24 23 44 44 H 1.09008 * 109.47367 * 181.01385 * 25 24 23 45 45 H 1.08995 * 109.47421 * 301.01067 * 25 24 23 46 46 H 1.09003 * 110.38657 * 21.41211 * 26 9 7 47 47 H 1.08992 * 110.38701 * 259.02697 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7091 -0.0068 5 6 3.5779 -0.6890 -0.0049 6 6 2.2678 -1.1182 0.0031 7 6 1.8123 -2.5125 0.0077 8 8 0.6560 -2.7739 0.2824 9 7 2.6744 -3.5040 -0.2924 10 6 4.1139 -3.3882 -0.6208 11 6 4.3395 -4.4056 -1.7589 12 6 4.3173 -3.7412 -3.1370 13 6 5.6412 -5.1822 -1.4838 14 7 5.3123 -6.6080 -1.6451 15 6 6.1513 -7.5968 -2.0851 16 1 7.0666 -7.3399 -2.5976 17 6 5.8254 -8.9291 -1.8722 18 7 4.8147 -9.2425 -1.0895 19 14 6.8214 -10.2775 -2.6965 20 1 7.8954 -9.6664 -3.5201 21 1 7.4280 -11.1495 -1.6589 22 1 5.9319 -11.0884 -3.5664 23 6 3.9071 -6.7643 -1.2351 24 6 3.2014 -5.4457 -1.5918 25 6 2.3256 -5.5817 -2.8389 26 6 2.3973 -4.9570 -0.3687 27 1 -0.3633 -0.0999 1.0228 28 1 -0.3632 0.9357 -0.4250 29 1 -0.3633 -0.8358 -0.5980 30 1 1.9084 2.1235 0.0010 31 1 4.4133 1.3609 -0.0131 32 1 4.4583 -1.3147 -0.0094 33 1 4.3456 -2.3793 -0.9621 34 1 4.7230 -3.6444 0.2461 35 1 3.3662 -3.2278 -3.2775 36 1 5.1326 -3.0212 -3.2063 37 1 4.4373 -4.5014 -3.9088 38 1 5.9864 -4.9907 -0.4678 39 1 6.4088 -4.8920 -2.2011 40 1 4.5867 -10.1737 -0.9410 41 1 3.4494 -7.5920 -1.7766 42 1 3.8484 -6.9413 -0.1611 43 1 1.5505 -6.3268 -2.6591 44 1 1.8611 -4.6214 -3.0633 45 1 2.9408 -5.8937 -3.6828 46 1 1.3322 -5.1331 -0.5196 47 1 2.7413 -5.4572 0.5364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982214090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:58 Heat of formation + Delta-G solvation = 44.429466 kcal Electronic energy + Delta-G solvation = -28049.190369 eV Core-core repulsion = 24426.490006 eV Total energy + Delta-G solvation = -3622.700363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.45757 -41.48866 -39.43295 -36.71004 -34.64035 -33.74624 -33.17871 -32.35938 -30.54450 -28.69892 -27.59920 -27.26457 -26.81584 -26.58225 -24.28331 -22.49052 -21.91673 -21.40357 -20.13409 -19.35995 -18.80711 -17.86617 -17.36021 -16.94846 -16.60058 -16.22035 -16.12736 -15.93472 -15.40167 -15.03117 -14.77895 -14.69826 -14.38063 -14.16218 -13.95653 -13.68630 -13.54195 -13.45907 -13.25935 -13.19666 -13.10533 -12.98728 -12.82626 -12.71922 -12.49600 -12.23374 -12.08024 -11.85067 -11.77320 -11.41813 -11.35937 -11.12701 -11.00186 -10.66428 -9.87142 -9.64260 -9.13371 -8.79947 -7.87375 -5.22389 0.49423 1.47776 1.48880 1.54148 1.59217 1.86126 2.27384 2.32200 2.51868 3.29968 3.34392 3.46034 3.71005 3.89223 3.94042 3.98765 4.14507 4.19223 4.23665 4.28107 4.36481 4.37894 4.47391 4.56012 4.62184 4.69518 4.71028 4.78074 4.80998 4.90008 4.91413 4.97120 5.02836 5.16703 5.18136 5.20869 5.28268 5.31528 5.38269 5.49053 5.55309 5.60862 5.75084 5.87520 6.01683 6.24251 6.36299 6.49931 7.03613 7.09217 7.77528 8.50406 9.26191 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.003427 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.746184 B = 8169.021607 C = 8608.519578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.422 5.422 3 C 0.026 3.974 4 C -0.218 4.218 5 C -0.149 4.149 6 C -0.083 4.083 7 C 0.600 3.400 8 O -0.593 6.593 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.071 4.071 12 C -0.114 4.114 13 C 0.139 3.861 14 N -0.613 5.613 15 C -0.236 4.236 16 H 0.082 0.918 17 C -0.061 4.061 18 N -0.947 5.947 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.294 1.294 23 C 0.193 3.807 24 C -0.084 4.084 25 C -0.110 4.110 26 C 0.126 3.874 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.207 0.793 31 H 0.167 0.833 32 H 0.164 0.836 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.247 0.753 41 H 0.036 0.964 42 H -0.005 1.005 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 23.043 -0.711 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.095 5.095 3 C -0.109 4.109 4 C -0.242 4.242 5 C -0.176 4.176 6 C -0.196 4.196 7 C 0.392 3.608 8 O -0.477 6.477 9 N -0.333 5.333 10 C -0.022 4.022 11 C -0.073 4.073 12 C -0.171 4.171 13 C 0.014 3.986 14 N -0.337 5.337 15 C -0.365 4.365 16 H 0.100 0.900 17 C -0.254 4.254 18 N -0.595 5.595 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.221 1.221 23 C 0.067 3.933 24 C -0.086 4.086 25 C -0.167 4.167 26 C 0.003 3.997 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.224 0.776 31 H 0.185 0.815 32 H 0.181 0.819 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.593 22.729 -0.550 23.413 hybrid contribution 0.232 -1.744 0.118 1.764 sum -5.361 20.985 -0.433 21.663 Atomic orbital electron populations 1.22235 0.75418 1.05242 1.03957 1.44097 1.07492 1.04960 1.52941 1.22729 0.90451 0.92329 1.05386 1.21231 0.97266 0.94435 1.11226 1.22120 0.94484 0.96806 1.04164 1.19825 0.91748 0.86682 1.21318 1.16951 0.83700 0.83845 0.76276 1.90750 1.19227 1.84955 1.52746 1.48595 1.11194 1.06197 1.67312 1.23262 0.79910 1.01746 0.97293 1.22257 0.94568 0.93986 0.96496 1.21573 1.02102 0.99796 0.93612 1.21667 0.94875 0.84014 0.98061 1.44707 1.08537 1.03752 1.76706 1.19401 1.02637 0.85764 1.28726 0.90050 1.25668 1.00185 0.99487 1.00096 1.70136 1.32033 1.16675 1.40613 0.85094 0.78033 0.79146 0.77554 1.18733 1.22202 1.22138 1.20941 0.84380 0.92876 0.95149 1.22323 0.95119 0.96274 0.94900 1.21515 0.98169 1.00970 0.96023 1.22394 1.00249 0.79453 0.97584 0.90707 0.86103 0.91255 0.77605 0.81502 0.81907 0.85993 0.90258 0.92378 0.90412 0.93150 0.95874 0.92595 0.94401 0.94516 0.98694 0.93296 0.91973 0.92742 0.90931 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.29 127.77 1.31 2.55 16 2 N -0.42 -8.92 3.16 -534.31 -1.69 -10.61 16 3 C 0.03 0.40 11.37 83.48 0.95 1.35 16 4 C -0.22 -3.63 10.81 22.01 0.24 -3.39 16 5 C -0.15 -3.23 9.17 22.57 0.21 -3.02 16 6 C -0.08 -2.21 6.80 40.35 0.27 -1.93 16 7 C 0.60 19.58 7.82 86.45 0.68 20.25 16 8 O -0.59 -22.66 15.42 -4.33 -0.07 -22.73 16 9 N -0.60 -18.93 3.31 -813.12 -2.69 -21.63 16 10 C 0.10 2.69 5.05 86.52 0.44 3.13 16 11 C -0.07 -2.23 1.09 -50.67 -0.06 -2.29 16 12 C -0.11 -3.01 7.54 71.98 0.54 -2.47 16 13 C 0.14 5.32 6.48 86.60 0.56 5.88 16 14 N -0.61 -30.30 3.38 -694.91 -2.35 -32.65 16 15 C -0.24 -12.85 10.27 84.03 0.86 -11.98 16 16 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 17 C -0.06 -3.39 5.37 84.86 0.46 -2.93 16 18 N -0.95 -56.59 10.98 21.65 0.24 -56.35 16 19 Si 0.97 45.16 29.56 68.60 2.03 47.19 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 C 0.19 9.24 4.79 86.50 0.41 9.66 16 24 C -0.08 -3.07 1.08 -50.77 -0.05 -3.12 16 25 C -0.11 -3.71 7.46 71.98 0.54 -3.17 16 26 C 0.13 4.47 6.21 86.52 0.54 5.00 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.12 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.07 1.53 7.07 -2.38 -0.02 1.51 16 30 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.16 3.13 5.10 -2.91 -0.01 3.11 16 33 H 0.12 2.66 4.31 -2.39 -0.01 2.65 16 34 H 0.08 2.15 7.15 -2.39 -0.02 2.13 16 35 H 0.06 1.46 7.21 -2.39 -0.02 1.45 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.49 7.18 -2.39 -0.02 1.47 16 38 H 0.02 0.89 7.10 -2.39 -0.02 0.87 16 39 H 0.06 2.00 7.88 -2.39 -0.02 1.98 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.04 2.00 6.61 -2.39 -0.02 1.99 16 42 H 0.00 -0.25 7.10 -2.39 -0.02 -0.27 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.87 7.21 -2.38 -0.02 1.86 16 45 H 0.05 1.92 7.20 -2.39 -0.02 1.91 16 46 H 0.07 2.63 7.63 -2.39 -0.02 2.61 16 47 H 0.06 2.42 7.15 -2.39 -0.02 2.40 16 Total: -1.00 -72.16 359.44 4.34 -67.83 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.97 Total: 15.45 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.90 Total: 13.51 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.49 Total: -121.24 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.07 Total: -22.73 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.16 4.34 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982214090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.255 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds