Wall clock time and date at job start Tue Mar 31 2020 11:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.46041 * 2 1 4 4 C 1.38357 * 119.30590 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28742 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.56022 * 180.02562 * 5 4 3 7 7 O 1.21547 * 119.99879 * 127.16429 * 6 5 4 8 8 N 1.34776 * 119.99955 * 307.17363 * 6 5 4 9 9 C 1.46927 * 120.62909 * 3.64804 * 8 6 5 10 10 C 1.52764 * 109.00972 * 233.58759 * 9 8 6 11 11 C 1.53046 * 109.38093 * 305.58994 * 10 9 8 12 12 N 1.46503 * 109.44489 * 181.24956 * 11 10 9 13 13 C 1.46492 * 120.00365 * 299.94092 * 12 11 10 14 14 C 1.36942 * 119.99330 * 119.93918 * 12 11 10 15 15 H 1.07999 * 120.00313 * 29.14535 * 14 12 11 16 16 C 1.38810 * 119.99704 * 209.13334 * 14 12 11 17 17 N 1.31619 * 119.99893 * 7.74176 * 16 14 12 18 18 Si 1.86801 * 119.99992 * 187.72747 * 16 14 12 19 19 H 1.48505 * 109.46868 * 60.00865 * 18 16 14 20 20 H 1.48508 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47435 * 300.00820 * 18 16 14 22 22 C 1.53039 * 109.53643 * 61.24302 * 11 10 9 23 23 C 1.46922 * 120.63250 * 183.93321 * 8 6 5 24 24 C 1.39521 * 118.88346 * 0.02562 * 5 4 3 25 25 C 1.50699 * 119.71865 * 179.97438 * 24 5 4 26 26 N 1.31691 * 120.56509 * 359.97438 * 24 5 4 27 27 H 1.09001 * 109.46872 * 90.00782 * 1 2 3 28 28 H 1.09007 * 109.46848 * 210.00010 * 1 2 3 29 29 H 1.09000 * 109.47634 * 330.00146 * 1 2 3 30 30 H 1.08000 * 120.34701 * 0.24741 * 3 2 1 31 31 H 1.08003 * 120.85509 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.58952 * 353.42191 * 9 8 6 33 33 H 1.08998 * 109.58258 * 113.85238 * 9 8 6 34 34 H 1.09001 * 109.56576 * 185.55592 * 10 9 8 35 35 H 1.09003 * 109.36067 * 65.49632 * 10 9 8 36 36 H 1.08992 * 109.46018 * 301.21677 * 11 10 9 37 37 H 1.08999 * 109.47704 * 85.30666 * 13 12 11 38 38 H 1.09002 * 109.47047 * 205.31501 * 13 12 11 39 39 H 1.09006 * 109.47368 * 325.30544 * 13 12 11 40 40 H 0.97003 * 119.99504 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.49663 * 178.68289 * 22 11 10 42 42 H 1.09002 * 109.53002 * 58.59841 * 22 11 10 43 43 H 1.08995 * 109.58841 * 246.15501 * 23 8 6 44 44 H 1.09008 * 109.58638 * 6.43294 * 23 8 6 45 45 H 1.09004 * 109.47420 * 94.19989 * 25 24 5 46 46 H 1.08994 * 109.47297 * 214.20134 * 25 24 5 47 47 H 1.08997 * 109.47042 * 334.20326 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0339 0.0016 6 6 5.7083 -0.0965 0.0028 7 8 6.2879 -0.7572 0.8424 8 7 6.4122 0.5792 -0.9270 9 6 5.7306 1.4454 -1.8985 10 6 6.1540 1.0402 -3.3093 11 6 7.6811 1.0643 -3.4079 12 7 8.0877 0.7049 -4.7687 13 6 7.7185 -0.5999 -5.3230 14 6 8.8128 1.5888 -5.5225 15 1 9.4731 2.2947 -5.0407 16 6 8.6995 1.5772 -6.9059 17 7 7.7870 0.8261 -7.4851 18 14 9.8417 2.6280 -7.9455 19 1 11.2489 2.2235 -7.6975 20 1 9.5176 2.4387 -9.3823 21 1 9.6663 4.0574 -7.5830 22 6 8.2738 0.0602 -2.4167 23 6 7.8750 0.4587 -0.9923 24 6 3.4716 -1.2042 0.0016 25 6 4.1628 -2.5434 0.0021 26 7 2.1559 -1.1486 0.0010 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6443 2.1381 0.0040 31 1 4.1274 2.1266 0.0001 32 1 4.6515 1.3317 -1.7956 33 1 6.0093 2.4840 -1.7205 34 1 5.7317 1.7386 -4.0319 35 1 5.7917 0.0341 -3.5204 36 1 8.0444 2.0646 -3.1726 37 1 6.7191 -0.5420 -5.7542 38 1 8.4325 -0.8809 -6.0971 39 1 7.7293 -1.3478 -4.5301 40 1 7.7076 0.8183 -8.4519 41 1 9.3604 0.0610 -2.5040 42 1 7.8920 -0.9370 -2.6360 43 1 8.3321 1.4152 -0.7389 44 1 8.2105 -0.3041 -0.2897 45 1 4.2621 -2.9006 1.0272 46 1 3.5744 -3.2561 -0.5756 47 1 5.1518 -2.4420 -0.4447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985805149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:54 Heat of formation + Delta-G solvation = 21.222189 kcal Electronic energy + Delta-G solvation = -27284.263882 eV Core-core repulsion = 23660.557176 eV Total energy + Delta-G solvation = -3623.706706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06252 -39.46851 -37.52037 -35.13210 -33.85075 -33.31773 -32.04902 -30.75327 -29.81255 -29.26972 -27.43958 -25.99786 -24.95422 -23.14273 -23.07144 -22.27990 -21.77915 -20.13241 -18.75203 -17.35976 -16.87937 -16.75445 -16.13591 -15.64852 -15.12185 -15.04065 -14.63694 -14.43798 -13.94995 -13.73382 -13.56143 -13.40146 -13.37457 -13.30085 -13.01009 -12.56568 -12.44484 -12.33051 -12.21835 -12.05644 -12.02611 -11.62330 -11.53327 -11.03425 -10.88855 -10.79838 -10.39078 -10.27369 -10.20398 -10.16499 -9.97399 -9.83082 -9.64516 -9.47656 -8.97052 -8.58228 -8.48716 -6.68824 -5.77518 -3.27412 0.62686 1.00336 2.61994 3.01722 3.35619 3.41329 3.41742 3.51852 3.93762 4.37375 4.43769 4.45270 4.52075 4.81075 5.03999 5.11021 5.21920 5.24201 5.31286 5.34039 5.35543 5.40642 5.44621 5.49905 5.59076 5.60613 5.66660 5.71513 5.79936 5.87873 5.95382 5.98313 6.01735 6.14834 6.24383 6.36813 6.43606 6.47746 6.59647 6.81710 6.95546 6.98224 7.35937 7.42491 7.68252 7.75996 7.77485 8.13341 8.42221 9.22015 9.83707 10.36752 11.28589 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.003248 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.522032 B = 8617.571304 C = 9179.481528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.147 3.853 3 C -0.185 4.185 4 C -0.038 4.038 5 C -0.182 4.182 6 C 0.566 3.434 7 O -0.538 6.538 8 N -0.596 5.596 9 C 0.101 3.899 10 C -0.145 4.145 11 C 0.179 3.821 12 N -0.593 5.593 13 C 0.163 3.837 14 C -0.259 4.259 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.905 5.905 18 Si 0.904 3.096 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.147 4.147 23 C 0.116 3.884 24 C 0.184 3.816 25 C -0.105 4.105 26 N -0.487 5.487 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.016 0.984 38 H 0.052 0.948 39 H -0.006 1.006 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 0.250 15.129 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.009 3.991 3 C -0.205 4.205 4 C -0.064 4.064 5 C -0.187 4.187 6 C 0.353 3.647 7 O -0.416 6.416 8 N -0.328 5.328 9 C -0.022 4.022 10 C -0.185 4.185 11 C 0.071 3.929 12 N -0.315 5.315 13 C 0.019 3.981 14 C -0.389 4.389 15 H 0.082 0.918 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.734 3.266 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.187 4.187 23 C -0.007 4.007 24 C 0.045 3.955 25 C -0.162 4.162 26 N -0.198 5.198 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.012 0.988 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.659 -0.901 15.335 19.285 hybrid contribution 0.957 1.521 -0.881 2.002 sum -10.702 0.621 14.454 17.996 Atomic orbital electron populations 1.20766 0.88518 1.03605 1.03427 1.21467 0.97202 0.88217 0.92224 1.21861 0.94391 0.99517 1.04727 1.21737 0.94585 0.97253 0.92859 1.20749 0.94693 0.95087 1.08205 1.18041 0.86179 0.79169 0.81291 1.90766 1.71024 1.42098 1.37735 1.48118 1.07947 1.45470 1.31302 1.22009 0.97118 0.93594 0.89509 1.22415 1.00195 1.02148 0.93757 1.20308 0.90628 0.95959 0.86020 1.43865 1.62536 1.14351 1.10721 1.20704 0.99258 0.84098 0.94064 1.19138 1.17417 1.14020 0.88330 0.91783 1.25171 0.97610 0.98956 0.97457 1.70022 1.33796 1.41911 1.09201 0.86355 0.80511 0.80314 0.79417 1.21000 1.21632 1.20890 1.22467 1.01591 1.01284 0.93349 1.21701 0.78226 1.02071 0.98678 1.21307 0.88655 0.94954 0.90571 1.20780 0.99897 0.91752 1.03754 1.67408 1.08863 1.29159 1.14329 0.89980 0.90295 0.90501 0.84177 0.84087 0.90226 0.91182 0.90465 0.92234 0.91889 0.96521 0.92949 0.98760 0.93644 0.90714 0.91973 0.91498 0.89443 0.89601 0.90290 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.16 36.00 0.37 -0.39 16 2 C 0.15 1.57 6.78 -82.51 -0.56 1.01 16 3 C -0.19 -1.76 9.72 -39.49 -0.38 -2.14 16 4 C -0.04 -0.42 7.55 -38.87 -0.29 -0.71 16 5 C -0.18 -2.45 4.92 -104.82 -0.52 -2.97 16 6 C 0.57 8.55 6.18 -12.33 -0.08 8.47 16 7 O -0.54 -9.43 15.32 5.32 0.08 -9.35 16 8 N -0.60 -8.57 2.98 -174.14 -0.52 -9.09 16 9 C 0.10 1.35 5.49 -3.93 -0.02 1.33 16 10 C -0.14 -2.49 5.32 -26.83 -0.14 -2.64 16 11 C 0.18 3.45 2.56 -67.89 -0.17 3.28 16 12 N -0.59 -14.33 2.79 -173.44 -0.48 -14.81 16 13 C 0.16 3.97 8.10 59.84 0.48 4.45 16 14 C -0.26 -6.91 9.51 -15.06 -0.14 -7.06 16 15 H 0.06 1.67 7.84 -52.49 -0.41 1.25 16 16 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 17 N -0.91 -25.91 10.88 55.49 0.60 -25.30 16 18 Si 0.90 21.38 29.56 -169.99 -5.02 16.35 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.15 -2.47 5.30 -26.61 -0.14 -2.61 16 23 C 0.12 1.67 6.43 -3.71 -0.02 1.65 16 24 C 0.18 2.51 6.82 -82.18 -0.56 1.95 16 25 C -0.10 -1.32 9.41 36.01 0.34 -0.98 16 26 N -0.49 -6.37 10.17 -5.42 -0.06 -6.43 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.38 8.07 -51.93 -0.42 -0.03 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.14 1.26 7.34 -52.48 -0.39 0.87 16 32 H 0.08 0.98 4.69 -51.93 -0.24 0.74 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 36 H 0.06 1.22 7.89 -51.93 -0.41 0.81 16 37 H 0.02 0.43 7.78 -51.93 -0.40 0.03 16 38 H 0.05 1.39 6.97 -51.93 -0.36 1.03 16 39 H -0.01 -0.13 6.48 -51.93 -0.34 -0.47 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 42 H 0.06 1.12 6.75 -51.93 -0.35 0.76 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.29 7.03 -51.92 -0.36 0.93 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.07 6.57 -51.93 -0.34 0.73 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -31.52 369.03 -9.14 -40.66 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.37 Total: -0.34 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.94 Total: 2.75 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.45 Total: -55.63 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.52 -9.14 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985805149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.884 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds