Wall clock time and date at job start Tue Mar 31 2020 11:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38356 * 119.46041 * 2 1 4 4 C 1.38357 * 119.30590 * 179.97438 * 3 2 1 5 5 C 1.40021 * 118.28742 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.56022 * 180.02562 * 5 4 3 7 7 O 1.21547 * 119.99879 * 127.16429 * 6 5 4 8 8 N 1.34776 * 119.99955 * 307.17363 * 6 5 4 9 9 C 1.46927 * 120.62909 * 3.64804 * 8 6 5 10 10 C 1.52764 * 109.00972 * 233.58759 * 9 8 6 11 11 C 1.53046 * 109.38093 * 305.58994 * 10 9 8 12 12 N 1.46503 * 109.44489 * 181.24956 * 11 10 9 13 13 C 1.46492 * 120.00365 * 299.94092 * 12 11 10 14 14 C 1.36942 * 119.99330 * 119.93918 * 12 11 10 15 15 H 1.07999 * 120.00313 * 29.14535 * 14 12 11 16 16 C 1.38810 * 119.99704 * 209.13334 * 14 12 11 17 17 N 1.31619 * 119.99893 * 7.74176 * 16 14 12 18 18 Si 1.86801 * 119.99992 * 187.72747 * 16 14 12 19 19 H 1.48505 * 109.46868 * 60.00865 * 18 16 14 20 20 H 1.48508 * 109.47014 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47435 * 300.00820 * 18 16 14 22 22 C 1.53039 * 109.53643 * 61.24302 * 11 10 9 23 23 C 1.46922 * 120.63250 * 183.93321 * 8 6 5 24 24 C 1.39521 * 118.88346 * 0.02562 * 5 4 3 25 25 C 1.50699 * 119.71865 * 179.97438 * 24 5 4 26 26 N 1.31691 * 120.56509 * 359.97438 * 24 5 4 27 27 H 1.09001 * 109.46872 * 90.00782 * 1 2 3 28 28 H 1.09007 * 109.46848 * 210.00010 * 1 2 3 29 29 H 1.09000 * 109.47634 * 330.00146 * 1 2 3 30 30 H 1.08000 * 120.34701 * 0.24741 * 3 2 1 31 31 H 1.08003 * 120.85509 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.58952 * 353.42191 * 9 8 6 33 33 H 1.08998 * 109.58258 * 113.85238 * 9 8 6 34 34 H 1.09001 * 109.56576 * 185.55592 * 10 9 8 35 35 H 1.09003 * 109.36067 * 65.49632 * 10 9 8 36 36 H 1.08992 * 109.46018 * 301.21677 * 11 10 9 37 37 H 1.08999 * 109.47704 * 85.30666 * 13 12 11 38 38 H 1.09002 * 109.47047 * 205.31501 * 13 12 11 39 39 H 1.09006 * 109.47368 * 325.30544 * 13 12 11 40 40 H 0.97003 * 119.99504 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.49663 * 178.68289 * 22 11 10 42 42 H 1.09002 * 109.53002 * 58.59841 * 22 11 10 43 43 H 1.08995 * 109.58841 * 246.15501 * 23 8 6 44 44 H 1.09008 * 109.58638 * 6.43294 * 23 8 6 45 45 H 1.09004 * 109.47420 * 94.19989 * 25 24 5 46 46 H 1.08994 * 109.47297 * 214.20134 * 25 24 5 47 47 H 1.08997 * 109.47042 * 334.20326 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2009 0.0005 5 6 4.2312 -0.0339 0.0016 6 6 5.7083 -0.0965 0.0028 7 8 6.2879 -0.7572 0.8424 8 7 6.4122 0.5792 -0.9270 9 6 5.7306 1.4454 -1.8985 10 6 6.1540 1.0402 -3.3093 11 6 7.6811 1.0643 -3.4079 12 7 8.0877 0.7049 -4.7687 13 6 7.7185 -0.5999 -5.3230 14 6 8.8128 1.5888 -5.5225 15 1 9.4731 2.2947 -5.0407 16 6 8.6995 1.5772 -6.9059 17 7 7.7870 0.8261 -7.4851 18 14 9.8417 2.6280 -7.9455 19 1 11.2489 2.2235 -7.6975 20 1 9.5176 2.4387 -9.3823 21 1 9.6663 4.0574 -7.5830 22 6 8.2738 0.0602 -2.4167 23 6 7.8750 0.4587 -0.9923 24 6 3.4716 -1.2042 0.0016 25 6 4.1628 -2.5434 0.0021 26 7 2.1559 -1.1486 0.0010 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6443 2.1381 0.0040 31 1 4.1274 2.1266 0.0001 32 1 4.6515 1.3317 -1.7956 33 1 6.0093 2.4840 -1.7205 34 1 5.7317 1.7386 -4.0319 35 1 5.7917 0.0341 -3.5204 36 1 8.0444 2.0646 -3.1726 37 1 6.7191 -0.5420 -5.7542 38 1 8.4325 -0.8809 -6.0971 39 1 7.7293 -1.3478 -4.5301 40 1 7.7076 0.8183 -8.4519 41 1 9.3604 0.0610 -2.5040 42 1 7.8920 -0.9370 -2.6360 43 1 8.3321 1.4152 -0.7389 44 1 8.2105 -0.3041 -0.2897 45 1 4.2621 -2.9006 1.0272 46 1 3.5744 -3.2561 -0.5756 47 1 5.1518 -2.4420 -0.4447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985805149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:53 Heat of formation + Delta-G solvation = 2.957143 kcal Electronic energy + Delta-G solvation = -27285.055914 eV Core-core repulsion = 23660.557176 eV Total energy + Delta-G solvation = -3624.498738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05556 -40.55856 -38.93896 -36.75632 -34.72323 -34.39772 -33.61932 -31.98707 -31.51491 -30.07951 -28.39759 -28.01659 -26.37030 -24.36527 -24.27964 -23.39716 -22.98396 -21.42650 -20.07693 -18.75881 -18.46501 -17.83684 -17.26295 -16.95871 -16.47402 -16.17959 -15.74156 -15.60239 -15.45529 -15.11123 -14.98884 -14.56025 -14.48963 -14.28941 -14.14399 -13.98070 -13.72796 -13.30067 -13.16932 -13.15256 -13.00497 -12.96602 -12.83737 -12.78561 -12.63566 -12.37879 -12.25148 -12.07842 -11.87449 -11.64660 -11.30391 -11.19868 -10.75633 -10.59132 -10.47374 -9.88476 -9.68556 -8.67571 -7.83589 -5.35587 -0.26150 0.16770 1.47891 1.49127 1.49884 1.56119 1.91575 2.51049 2.63561 3.10833 3.31795 3.36500 3.60989 3.65701 3.72471 3.86424 4.02654 4.07428 4.14939 4.25760 4.35885 4.37157 4.51549 4.52574 4.54758 4.60935 4.70179 4.71806 4.76070 4.81410 4.82077 4.90344 4.95764 4.98707 5.02903 5.06371 5.14814 5.18952 5.21511 5.34298 5.47701 5.55388 5.64379 5.66523 5.67041 6.26966 6.38581 6.89500 6.98374 7.17184 7.87868 8.36272 9.21088 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.003248 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.522032 B = 8617.571304 C = 9179.481528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.137 3.863 3 C -0.175 4.175 4 C -0.039 4.039 5 C -0.204 4.204 6 C 0.569 3.431 7 O -0.568 6.568 8 N -0.596 5.596 9 C 0.112 3.888 10 C -0.134 4.134 11 C 0.174 3.826 12 N -0.609 5.609 13 C 0.182 3.818 14 C -0.266 4.266 15 H 0.071 0.929 16 C -0.048 4.048 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.272 1.272 22 C -0.134 4.134 23 C 0.123 3.877 24 C 0.162 3.838 25 C -0.100 4.100 26 N -0.509 5.509 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.179 0.821 31 H 0.165 0.835 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.067 0.933 37 H -0.008 1.008 38 H 0.023 0.977 39 H 0.016 0.984 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 2.536 16.537 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.001 4.001 3 C -0.194 4.194 4 C -0.065 4.065 5 C -0.209 4.209 6 C 0.357 3.643 7 O -0.449 6.449 8 N -0.328 5.328 9 C -0.010 4.010 10 C -0.174 4.174 11 C 0.068 3.932 12 N -0.331 5.331 13 C 0.037 3.963 14 C -0.396 4.396 15 H 0.088 0.912 16 C -0.243 4.243 17 N -0.584 5.584 18 Si 0.796 3.204 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.198 1.198 22 C -0.174 4.174 23 C 0.000 4.000 24 C 0.024 3.976 25 C -0.158 4.158 26 N -0.220 5.220 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.197 0.803 31 H 0.182 0.818 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.042 0.958 39 H 0.034 0.966 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.694 1.402 16.778 21.085 hybrid contribution 1.210 0.795 -1.265 1.923 sum -11.483 2.197 15.513 19.425 Atomic orbital electron populations 1.20880 0.86084 1.04828 1.04296 1.22166 0.98914 0.88097 0.90955 1.22289 0.93939 1.00611 1.02567 1.22056 0.95444 0.96954 0.92007 1.20699 0.93567 0.96314 1.10361 1.18297 0.86939 0.78277 0.80768 1.90742 1.71842 1.43239 1.39036 1.48150 1.07862 1.45521 1.31251 1.21989 0.97998 0.94530 0.86528 1.22200 0.98360 1.00691 0.96161 1.20521 0.92068 0.96736 0.83918 1.44086 1.62803 1.13965 1.12268 1.20370 0.96898 0.85205 0.93803 1.19505 1.17448 1.13753 0.88879 0.91163 1.25911 0.99230 1.00468 0.98711 1.70192 1.35615 1.43698 1.08866 0.85344 0.78662 0.79144 0.77258 1.20556 1.22354 1.19792 1.22276 1.01176 0.99598 0.94316 1.21621 0.78637 1.03136 0.96587 1.21397 0.89281 0.95212 0.91678 1.20706 0.99070 0.92228 1.03752 1.67434 1.08535 1.30777 1.15277 0.89101 0.90713 0.87695 0.80320 0.81794 0.88589 0.88437 0.91999 0.94238 0.91441 0.98945 0.95848 0.96594 0.94331 0.90947 0.93595 0.89223 0.89691 0.89516 0.89639 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.16 71.23 0.72 -0.45 16 2 C 0.14 2.57 6.78 42.57 0.29 2.86 16 3 C -0.17 -2.67 9.72 22.33 0.22 -2.45 16 4 C -0.04 -0.73 7.55 22.73 0.17 -0.55 16 5 C -0.20 -5.24 4.92 -19.99 -0.10 -5.34 16 6 C 0.57 16.64 6.18 86.79 0.54 17.18 16 7 O -0.57 -19.84 15.32 -3.86 -0.06 -19.90 16 8 N -0.60 -16.13 2.98 -823.15 -2.45 -18.58 16 9 C 0.11 2.74 5.49 86.22 0.47 3.21 16 10 C -0.13 -4.52 5.32 30.53 0.16 -4.36 16 11 C 0.17 6.59 2.56 45.02 0.12 6.70 16 12 N -0.61 -29.66 2.79 -702.64 -1.96 -31.62 16 13 C 0.18 9.13 8.10 127.77 1.03 10.17 16 14 C -0.27 -14.16 9.51 84.03 0.80 -13.36 16 15 H 0.07 3.59 7.84 -2.91 -0.02 3.57 16 16 C -0.05 -2.62 5.13 84.86 0.44 -2.19 16 17 N -0.94 -54.97 10.88 21.65 0.24 -54.74 16 18 Si 0.97 44.10 29.56 68.60 2.03 46.12 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.13 -4.40 5.30 30.67 0.16 -4.24 16 23 C 0.12 3.35 6.43 86.36 0.55 3.90 16 24 C 0.16 4.39 6.82 42.89 0.29 4.69 16 25 C -0.10 -2.61 9.41 71.24 0.67 -1.94 16 26 N -0.51 -12.83 10.17 -171.06 -1.74 -14.57 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 30 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 31 H 0.16 2.22 7.34 -2.91 -0.02 2.20 16 32 H 0.10 2.09 4.69 -2.39 -0.01 2.08 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.04 1.48 7.72 -2.39 -0.02 1.46 16 36 H 0.07 2.49 7.89 -2.39 -0.02 2.47 16 37 H -0.01 -0.42 7.78 -2.39 -0.02 -0.44 16 38 H 0.02 1.26 6.97 -2.39 -0.02 1.25 16 39 H 0.02 0.71 6.48 -2.38 -0.02 0.69 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 42 H 0.05 1.65 6.75 -2.39 -0.02 1.63 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 2.43 7.03 -2.38 -0.02 2.41 16 45 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 1.76 6.57 -2.39 -0.02 1.75 16 Total: -1.00 -70.00 369.03 3.55 -66.45 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.96 Total: 13.00 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.54 Total: 13.83 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.92 Total: -119.50 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.00 3.55 -66.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985805149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds