Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38159 * 119.55266 * 2 1 4 4 C 1.39814 * 119.00162 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92303 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99742 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00471 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00257 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52629 * 325.07688 * 8 7 5 10 10 C 1.53039 * 109.49869 * 85.16237 * 8 7 5 11 11 C 1.53033 * 109.54151 * 58.58292 * 10 8 7 12 12 C 1.53197 * 109.30980 * 61.36687 * 11 10 8 13 13 N 1.46921 * 108.77744 * 305.36292 * 12 11 10 14 14 C 1.36928 * 120.63684 * 233.58739 * 13 12 11 15 15 H 1.08006 * 120.00337 * 151.57372 * 14 13 12 16 16 C 1.38818 * 119.99950 * 331.57617 * 14 13 12 17 17 N 1.31616 * 119.99945 * 160.52489 * 16 14 13 18 18 Si 1.86803 * 119.99637 * 340.52106 * 16 14 13 19 19 H 1.48495 * 109.46938 * 94.85198 * 18 16 14 20 20 H 1.48498 * 109.46531 * 214.85051 * 18 16 14 21 21 H 1.48498 * 109.47185 * 334.84793 * 18 16 14 22 22 C 1.46935 * 118.73378 * 53.61142 * 13 12 11 23 23 H 1.08999 * 109.58877 * 66.17863 * 22 13 12 24 24 C 1.53001 * 109.58282 * 186.46213 * 22 13 12 25 25 C 1.39816 * 118.15297 * 0.25785 * 4 3 2 26 26 C 1.38148 * 119.00582 * 359.47729 * 25 4 3 27 27 C 1.50692 * 119.55646 * 180.27212 * 26 25 4 28 28 N 1.31807 * 119.55297 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47146 * 89.99309 * 1 2 3 30 30 H 1.09002 * 109.47474 * 209.99943 * 1 2 3 31 31 H 1.09003 * 109.47043 * 329.99641 * 1 2 3 32 32 H 1.08005 * 120.49397 * 0.02647 * 3 2 1 33 33 H 0.97003 * 119.99293 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.46251 * 178.60699 * 10 8 7 35 35 H 1.09007 * 109.46056 * 298.57864 * 10 8 7 36 36 H 1.09001 * 109.50090 * 301.41989 * 11 10 8 37 37 H 1.09001 * 109.50163 * 181.31483 * 11 10 8 38 38 H 1.09007 * 109.58625 * 185.57660 * 12 11 10 39 39 H 1.08996 * 109.58528 * 65.15698 * 12 11 10 40 40 H 0.97004 * 119.99860 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47364 * 60.00419 * 24 22 13 42 42 H 1.09006 * 109.46690 * 179.97438 * 24 22 13 43 43 H 1.08997 * 109.47271 * 299.99634 * 24 22 13 44 44 H 1.08001 * 120.49478 * 179.71765 * 25 4 3 45 45 H 1.08999 * 109.47495 * 270.25652 * 27 26 25 46 46 H 1.09003 * 109.47433 * 30.25541 * 27 26 25 47 47 H 1.08997 * 109.47767 * 150.25732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3599 2.4519 0.0000 6 8 3.7796 3.5195 -0.0005 7 7 5.7073 2.4173 0.0000 8 6 6.4721 3.6668 0.0000 9 1 5.9439 4.4172 -0.5881 10 6 6.6350 4.1659 1.4375 11 6 7.3474 3.0993 2.2722 12 6 8.7406 2.8456 1.6876 13 7 8.6019 2.5055 0.2651 14 6 9.1581 1.3589 -0.2357 15 1 8.7135 0.8719 -1.0911 16 6 10.2933 0.8223 0.3561 17 7 10.6095 -0.4386 0.1500 18 14 11.3723 1.8899 1.4450 19 1 10.9751 1.7096 2.8644 20 1 12.7933 1.4936 1.2744 21 1 11.2063 3.3149 1.0616 22 6 7.8553 3.4196 -0.6102 23 1 8.3918 4.3647 -0.6943 24 6 7.7026 2.7914 -1.9969 25 6 4.2343 -0.0506 -0.0045 26 6 3.4740 -1.2041 0.0013 27 6 4.1594 -2.5461 0.0022 28 7 2.1571 -1.1466 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6491 2.1376 0.0004 33 1 6.1705 1.5650 0.0008 34 1 7.2252 5.0823 1.4391 35 1 5.6528 4.3659 1.8660 36 1 6.7701 2.1749 2.2507 37 1 7.4423 3.4458 3.3013 38 1 9.2137 2.0183 2.2167 39 1 9.3493 3.7439 1.7910 40 1 11.4030 -0.8135 0.5632 41 1 7.1614 1.8491 -1.9113 42 1 7.1482 3.4707 -2.6444 43 1 8.6887 2.6067 -2.4227 44 1 5.3129 -0.1051 -0.0088 45 1 4.3249 -2.8703 -1.0252 46 1 5.1171 -2.4647 0.5163 47 1 3.5319 -3.2743 0.5162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993386395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = 14.470340 kcal Electronic energy + Delta-G solvation = -27742.577232 eV Core-core repulsion = 24118.577744 eV Total energy + Delta-G solvation = -3623.999488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73827 -39.54095 -37.81313 -34.29139 -33.74145 -33.09237 -32.56408 -31.70991 -30.08618 -29.15917 -26.85365 -26.51895 -25.02005 -24.26931 -22.48378 -21.89884 -21.01690 -20.10852 -19.02979 -17.54635 -16.78769 -16.43119 -15.76705 -15.47312 -15.25308 -15.16133 -14.72185 -14.62137 -14.11880 -13.68504 -13.58488 -13.52552 -13.37106 -13.30640 -13.06863 -12.61759 -12.50122 -12.19069 -12.15159 -11.96547 -11.78331 -11.69322 -11.61576 -11.33110 -10.89437 -10.73143 -10.59992 -10.36015 -10.08742 -9.99798 -9.82935 -9.59732 -9.54667 -9.44752 -8.84436 -8.76171 -8.65617 -7.06346 -6.04368 -3.43002 0.74532 1.02014 2.99454 3.26418 3.33092 3.43610 3.45169 3.79942 4.07925 4.45019 4.55008 4.68091 4.77338 4.97149 5.00127 5.13597 5.27823 5.32245 5.38641 5.40595 5.42362 5.44323 5.49188 5.57133 5.62367 5.64540 5.82894 5.88743 5.98130 6.00385 6.01272 6.05270 6.09482 6.19982 6.23717 6.28836 6.37876 6.44328 6.59483 6.61626 6.67201 6.75376 6.85848 6.95032 7.79935 7.85330 7.90275 8.23024 8.38483 8.82641 9.62511 9.99241 11.10490 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.004353 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.774946 B = 6430.170724 C = 7464.915923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.122 3.878 3 C -0.126 4.126 4 C -0.076 4.076 5 C 0.553 3.447 6 O -0.545 6.545 7 N -0.692 5.692 8 C 0.133 3.867 9 H 0.083 0.917 10 C -0.123 4.123 11 C -0.133 4.133 12 C 0.125 3.875 13 N -0.603 5.603 14 C -0.267 4.267 15 H 0.093 0.907 16 C 0.029 3.971 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.290 1.290 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.163 3.837 23 H 0.046 0.954 24 C -0.137 4.137 25 C -0.143 4.143 26 C 0.132 3.868 27 C -0.106 4.106 28 N -0.474 5.474 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.412 0.588 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 1.935 0.188 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.015 4.015 3 C -0.147 4.147 4 C -0.087 4.087 5 C 0.339 3.661 6 O -0.424 6.424 7 N -0.343 5.343 8 C 0.026 3.974 9 H 0.101 0.899 10 C -0.161 4.161 11 C -0.173 4.173 12 C 0.000 4.000 13 N -0.328 5.328 14 C -0.395 4.395 15 H 0.110 0.890 16 C -0.170 4.170 17 N -0.548 5.548 18 Si 0.712 3.288 19 H -0.218 1.218 20 H -0.233 1.233 21 H -0.195 1.195 22 C 0.056 3.944 23 H 0.064 0.936 24 C -0.194 4.194 25 C -0.164 4.164 26 C -0.005 4.005 27 C -0.163 4.163 28 N -0.186 5.186 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.163 0.837 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.974 1.793 0.185 15.082 hybrid contribution 1.587 0.957 0.763 2.004 sum -13.388 2.750 0.948 13.700 Atomic orbital electron populations 1.20698 0.88488 1.03507 1.03147 1.21222 0.97071 0.87797 0.95453 1.22032 0.93305 0.99837 0.99526 1.20452 0.94423 0.93724 1.00123 1.18162 0.82680 0.88137 0.77112 1.90725 1.70152 1.30687 1.50818 1.45947 1.04957 1.11273 1.72130 1.21573 0.93519 0.85477 0.96795 0.89914 1.21790 1.00197 0.98557 0.95566 1.21969 0.98600 0.98850 0.97846 1.21360 0.94258 0.98808 0.85565 1.44496 1.62507 1.23449 1.02315 1.18896 1.06681 0.98106 1.15776 0.88975 1.25288 0.97196 0.95939 0.98623 1.69801 1.27236 1.11569 1.46200 0.86977 0.80001 0.81890 0.79931 1.21788 1.23313 1.19466 1.20751 0.89144 0.93875 0.90635 0.93607 1.21802 1.02266 1.00168 0.95197 1.22310 1.01976 0.91994 1.00107 1.21248 0.88981 0.95888 0.94430 1.20765 1.00194 0.91844 1.03514 1.67217 1.09755 1.29508 1.12120 0.90358 0.90408 0.90593 0.83793 0.75023 0.91550 0.92420 0.91962 0.92820 0.90992 0.95557 0.92726 0.92482 0.93885 0.91305 0.83722 0.90087 0.89893 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.17 36.00 0.37 -0.52 16 2 C 0.12 1.53 6.78 -82.63 -0.56 0.97 16 3 C -0.13 -1.69 9.31 -39.02 -0.36 -2.05 16 4 C -0.08 -1.13 5.91 -104.65 -0.62 -1.74 16 5 C 0.55 9.05 7.77 -12.19 -0.09 8.95 16 6 O -0.54 -10.10 16.11 5.35 0.09 -10.02 16 7 N -0.69 -11.12 3.42 -54.54 -0.19 -11.31 16 8 C 0.13 2.16 2.33 -67.82 -0.16 2.00 16 9 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 10 C -0.12 -1.95 5.58 -26.69 -0.15 -2.10 16 11 C -0.13 -2.27 5.93 -26.61 -0.16 -2.43 16 12 C 0.13 2.53 4.19 -3.71 -0.02 2.51 16 13 N -0.60 -12.67 2.41 -164.77 -0.40 -13.07 16 14 C -0.27 -6.56 9.06 -15.06 -0.14 -6.70 16 15 H 0.09 2.38 6.37 -52.48 -0.33 2.04 16 16 C 0.03 0.78 5.24 -17.43 -0.09 0.68 16 17 N -0.91 -25.80 13.97 55.49 0.78 -25.02 16 18 Si 0.88 21.23 24.35 -169.99 -4.14 17.09 16 19 H -0.29 -6.85 6.72 56.52 0.38 -6.47 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.27 -6.40 6.44 56.52 0.36 -6.03 16 22 C 0.16 2.91 3.19 -67.59 -0.22 2.69 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 C -0.14 -2.33 7.73 37.16 0.29 -2.04 16 25 C -0.14 -1.99 9.24 -39.02 -0.36 -2.36 16 26 C 0.13 1.77 6.78 -82.64 -0.56 1.21 16 27 C -0.11 -1.16 10.16 36.00 0.37 -0.79 16 28 N -0.47 -6.49 10.16 -5.79 -0.06 -6.55 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.14 1.80 7.74 -52.48 -0.41 1.39 16 33 H 0.41 6.83 5.93 -40.82 -0.24 6.59 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.60 4.61 -51.93 -0.24 1.36 16 39 H 0.03 0.54 6.95 -51.93 -0.36 0.18 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 0.99 6.41 -51.93 -0.33 0.66 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.27 7.62 -51.93 -0.40 0.87 16 44 H 0.15 1.97 6.54 -52.49 -0.34 1.63 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -29.56 365.07 -8.16 -37.72 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.28 Total: 7.37 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.46 Total: -1.71 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.13 Total: -55.95 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.56 -8.16 -37.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993386395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.186 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds