Wall clock time and date at job start Tue Mar 31 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38159 * 119.55266 * 2 1 4 4 C 1.39814 * 119.00162 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92303 * 179.97438 * 4 3 2 6 6 O 1.21517 * 119.99742 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00471 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00257 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52629 * 325.07688 * 8 7 5 10 10 C 1.53039 * 109.49869 * 85.16237 * 8 7 5 11 11 C 1.53033 * 109.54151 * 58.58292 * 10 8 7 12 12 C 1.53197 * 109.30980 * 61.36687 * 11 10 8 13 13 N 1.46921 * 108.77744 * 305.36292 * 12 11 10 14 14 C 1.36928 * 120.63684 * 233.58739 * 13 12 11 15 15 H 1.08006 * 120.00337 * 151.57372 * 14 13 12 16 16 C 1.38818 * 119.99950 * 331.57617 * 14 13 12 17 17 N 1.31616 * 119.99945 * 160.52489 * 16 14 13 18 18 Si 1.86803 * 119.99637 * 340.52106 * 16 14 13 19 19 H 1.48495 * 109.46938 * 94.85198 * 18 16 14 20 20 H 1.48498 * 109.46531 * 214.85051 * 18 16 14 21 21 H 1.48498 * 109.47185 * 334.84793 * 18 16 14 22 22 C 1.46935 * 118.73378 * 53.61142 * 13 12 11 23 23 H 1.08999 * 109.58877 * 66.17863 * 22 13 12 24 24 C 1.53001 * 109.58282 * 186.46213 * 22 13 12 25 25 C 1.39816 * 118.15297 * 0.25785 * 4 3 2 26 26 C 1.38148 * 119.00582 * 359.47729 * 25 4 3 27 27 C 1.50692 * 119.55646 * 180.27212 * 26 25 4 28 28 N 1.31807 * 119.55297 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47146 * 89.99309 * 1 2 3 30 30 H 1.09002 * 109.47474 * 209.99943 * 1 2 3 31 31 H 1.09003 * 109.47043 * 329.99641 * 1 2 3 32 32 H 1.08005 * 120.49397 * 0.02647 * 3 2 1 33 33 H 0.97003 * 119.99293 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.46251 * 178.60699 * 10 8 7 35 35 H 1.09007 * 109.46056 * 298.57864 * 10 8 7 36 36 H 1.09001 * 109.50090 * 301.41989 * 11 10 8 37 37 H 1.09001 * 109.50163 * 181.31483 * 11 10 8 38 38 H 1.09007 * 109.58625 * 185.57660 * 12 11 10 39 39 H 1.08996 * 109.58528 * 65.15698 * 12 11 10 40 40 H 0.97004 * 119.99860 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47364 * 60.00419 * 24 22 13 42 42 H 1.09006 * 109.46690 * 179.97438 * 24 22 13 43 43 H 1.08997 * 109.47271 * 299.99634 * 24 22 13 44 44 H 1.08001 * 120.49478 * 179.71765 * 25 4 3 45 45 H 1.08999 * 109.47495 * 270.25652 * 27 26 25 46 46 H 1.09003 * 109.47433 * 30.25541 * 27 26 25 47 47 H 1.08997 * 109.47767 * 150.25732 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5865 1.1884 0.0005 5 6 4.3599 2.4519 0.0000 6 8 3.7796 3.5195 -0.0005 7 7 5.7073 2.4173 0.0000 8 6 6.4721 3.6668 0.0000 9 1 5.9439 4.4172 -0.5881 10 6 6.6350 4.1659 1.4375 11 6 7.3474 3.0993 2.2722 12 6 8.7406 2.8456 1.6876 13 7 8.6019 2.5055 0.2651 14 6 9.1581 1.3589 -0.2357 15 1 8.7135 0.8719 -1.0911 16 6 10.2933 0.8223 0.3561 17 7 10.6095 -0.4386 0.1500 18 14 11.3723 1.8899 1.4450 19 1 10.9751 1.7096 2.8644 20 1 12.7933 1.4936 1.2744 21 1 11.2063 3.3149 1.0616 22 6 7.8553 3.4196 -0.6102 23 1 8.3918 4.3647 -0.6943 24 6 7.7026 2.7914 -1.9969 25 6 4.2343 -0.0506 -0.0045 26 6 3.4740 -1.2041 0.0013 27 6 4.1594 -2.5461 0.0022 28 7 2.1571 -1.1466 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6491 2.1376 0.0004 33 1 6.1705 1.5650 0.0008 34 1 7.2252 5.0823 1.4391 35 1 5.6528 4.3659 1.8660 36 1 6.7701 2.1749 2.2507 37 1 7.4423 3.4458 3.3013 38 1 9.2137 2.0183 2.2167 39 1 9.3493 3.7439 1.7910 40 1 11.4030 -0.8135 0.5632 41 1 7.1614 1.8491 -1.9113 42 1 7.1482 3.4707 -2.6444 43 1 8.6887 2.6067 -2.4227 44 1 5.3129 -0.1051 -0.0088 45 1 4.3249 -2.8703 -1.0252 46 1 5.1171 -2.4647 0.5163 47 1 3.5319 -3.2743 0.5162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993386395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:04 Heat of formation + Delta-G solvation = -2.800759 kcal Electronic energy + Delta-G solvation = -27743.326163 eV Core-core repulsion = 24118.577744 eV Total energy + Delta-G solvation = -3624.748419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87989 -40.80476 -39.24976 -35.77722 -34.80557 -34.38179 -33.89837 -33.39825 -31.61178 -30.00539 -28.14448 -27.64850 -26.71121 -25.53094 -24.01499 -22.88646 -22.44219 -21.44421 -20.46704 -18.73837 -18.42081 -17.72503 -17.28691 -16.75678 -16.66124 -16.41481 -15.93741 -15.71603 -15.65623 -15.24809 -14.91983 -14.87298 -14.59188 -14.29343 -14.16092 -14.08040 -13.86204 -13.43551 -13.26585 -13.20653 -12.94962 -12.83639 -12.74276 -12.68765 -12.50670 -12.30195 -12.18044 -11.95199 -11.60448 -11.41719 -11.32163 -11.22356 -10.93327 -10.63649 -10.54736 -10.03894 -9.83341 -8.87005 -8.08508 -5.41385 -0.36959 0.00325 1.33598 1.46237 1.52154 1.79016 2.07790 2.47386 2.72235 3.09988 3.16868 3.29321 3.45091 3.63773 3.89158 3.92406 3.96562 3.98972 4.06144 4.22174 4.34061 4.45072 4.49868 4.52239 4.54950 4.59336 4.73494 4.74943 4.80225 4.80971 4.84667 4.90756 4.96900 4.98855 5.04683 5.05376 5.13977 5.15309 5.22106 5.25500 5.33884 5.43448 5.56406 5.63986 5.94622 6.23505 6.48245 6.88596 6.95674 7.08083 7.68760 8.08742 9.09726 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.004353 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.774946 B = 6430.170724 C = 7464.915923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.123 3.877 3 C -0.131 4.131 4 C -0.090 4.090 5 C 0.557 3.443 6 O -0.567 6.567 7 N -0.690 5.690 8 C 0.137 3.863 9 H 0.091 0.909 10 C -0.117 4.117 11 C -0.124 4.124 12 C 0.121 3.879 13 N -0.611 5.611 14 C -0.234 4.234 15 H 0.075 0.925 16 C -0.027 4.027 17 N -0.952 5.952 18 Si 0.932 3.068 19 H -0.284 1.284 20 H -0.321 1.321 21 H -0.260 1.260 22 C 0.161 3.839 23 H 0.058 0.942 24 C -0.131 4.131 25 C -0.151 4.151 26 C 0.126 3.874 27 C -0.104 4.104 28 N -0.486 5.486 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.408 0.592 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.257 0.743 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 3.390 0.573 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 C -0.151 4.151 4 C -0.101 4.101 5 C 0.344 3.656 6 O -0.448 6.448 7 N -0.340 5.340 8 C 0.031 3.969 9 H 0.109 0.891 10 C -0.155 4.155 11 C -0.163 4.163 12 C -0.004 4.004 13 N -0.336 5.336 14 C -0.363 4.363 15 H 0.093 0.907 16 C -0.222 4.222 17 N -0.598 5.598 18 Si 0.763 3.237 19 H -0.212 1.212 20 H -0.251 1.251 21 H -0.185 1.185 22 C 0.055 3.945 23 H 0.076 0.924 24 C -0.189 4.189 25 C -0.172 4.172 26 C -0.012 4.012 27 C -0.161 4.161 28 N -0.198 5.198 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.159 0.841 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.804 3.292 0.579 17.133 hybrid contribution 2.027 0.525 0.583 2.173 sum -14.777 3.817 1.163 15.306 Atomic orbital electron populations 1.20818 0.85720 1.04689 1.04393 1.21817 0.98846 0.87085 0.93791 1.22207 0.92798 1.00677 0.99466 1.20435 0.95063 0.93176 1.01389 1.18333 0.82557 0.88383 0.76345 1.90705 1.70468 1.31561 1.52040 1.45944 1.05032 1.11075 1.71992 1.21512 0.92395 0.85676 0.97313 0.89142 1.21758 1.00414 0.98667 0.94683 1.21856 0.96378 0.99008 0.99100 1.21387 0.96151 0.98029 0.84806 1.44592 1.62397 1.23228 1.03427 1.18868 1.05298 0.98301 1.13858 0.90738 1.25771 0.98850 0.96671 1.00888 1.69913 1.27954 1.13126 1.48848 0.86151 0.77650 0.80853 0.79065 1.21169 1.25121 1.18491 1.20929 0.89615 0.93526 0.90430 0.92411 1.21735 1.01443 1.00414 0.95273 1.22291 1.01838 0.92164 1.00908 1.21586 0.89184 0.96548 0.93845 1.20806 1.00133 0.90953 1.04216 1.67332 1.09793 1.30099 1.12579 0.88918 0.89890 0.88764 0.82932 0.75407 0.89894 0.92128 0.92969 0.90671 0.93245 0.94914 0.93346 0.93388 0.91260 0.93132 0.84142 0.89189 0.89887 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.17 71.23 0.72 -0.76 16 2 C 0.12 2.85 6.78 42.54 0.29 3.14 16 3 C -0.13 -3.33 9.31 22.63 0.21 -3.12 16 4 C -0.09 -2.59 5.91 -19.88 -0.12 -2.70 16 5 C 0.56 17.63 7.77 86.87 0.67 18.30 16 6 O -0.57 -20.18 16.11 -3.77 -0.06 -20.24 16 7 N -0.69 -21.44 3.42 -444.77 -1.52 -22.96 16 8 C 0.14 4.17 2.33 45.07 0.10 4.28 16 9 H 0.09 2.69 7.58 -2.39 -0.02 2.67 16 10 C -0.12 -3.37 5.58 30.62 0.17 -3.20 16 11 C -0.12 -3.95 5.93 30.67 0.18 -3.77 16 12 C 0.12 4.67 4.19 86.36 0.36 5.04 16 13 N -0.61 -25.03 2.41 -675.20 -1.63 -26.66 16 14 C -0.23 -11.56 9.06 84.04 0.76 -10.80 16 15 H 0.08 3.92 6.37 -2.91 -0.02 3.90 16 16 C -0.03 -1.44 5.24 84.86 0.45 -1.00 16 17 N -0.95 -55.79 13.97 21.65 0.30 -55.49 16 18 Si 0.93 44.14 24.35 68.60 1.67 45.81 16 19 H -0.28 -13.03 6.72 99.48 0.67 -12.36 16 20 H -0.32 -15.99 7.11 99.48 0.71 -15.28 16 21 H -0.26 -11.76 6.44 99.48 0.64 -11.12 16 22 C 0.16 5.44 3.19 44.97 0.14 5.58 16 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 24 C -0.13 -4.31 7.73 71.98 0.56 -3.75 16 25 C -0.15 -4.19 9.24 22.63 0.21 -3.98 16 26 C 0.13 3.28 6.78 42.54 0.29 3.56 16 27 C -0.10 -2.20 10.16 71.23 0.72 -1.48 16 28 N -0.49 -12.69 10.16 -172.23 -1.75 -14.44 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.15 3.55 7.74 -2.91 -0.02 3.53 16 33 H 0.41 13.43 5.93 -92.71 -0.55 12.88 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.05 1.76 7.53 -2.39 -0.02 1.75 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.15 4.61 -2.38 -0.01 2.14 16 39 H 0.03 1.24 6.95 -2.39 -0.02 1.22 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.05 1.65 6.41 -2.39 -0.02 1.63 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.05 1.83 7.62 -2.39 -0.02 1.81 16 44 H 0.14 3.91 6.54 -2.91 -0.02 3.89 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 47 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -62.99 365.07 3.07 -59.93 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.33 Total: 28.71 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 5.73 Total: 5.34 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.60 Total: -119.55 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.81 kcal Total: -62.99 3.07 -59.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993386395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.126 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds