Wall clock time and date at job start Tue Mar 31 2020 11:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31884 * 119.61450 * 2 1 4 4 C 1.31856 * 121.72362 * 180.02562 * 3 2 1 5 5 C 1.38220 * 120.76515 * 359.97438 * 4 3 2 6 6 C 1.38631 * 119.15890 * 359.72782 * 5 4 3 7 7 C 1.38173 * 119.61708 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.41927 * 359.97438 * 7 2 1 9 9 C 1.50699 * 109.47240 * 85.00133 * 8 7 2 10 10 O 1.21275 * 119.99880 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.48316 * 127.76993 * 359.93090 * 11 9 8 13 13 C 1.54383 * 104.53880 * 219.51449 * 12 11 9 14 14 H 1.09003 * 110.34402 * 95.17890 * 13 12 11 15 15 N 1.46494 * 110.34862 * 217.34062 * 13 12 11 16 16 C 1.36945 * 119.99612 * 272.12721 * 15 13 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99973 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47086 * 300.00269 * 20 18 16 24 24 C 1.54288 * 105.05439 * 336.26315 * 13 12 11 25 25 C 1.52995 * 110.34734 * 118.81324 * 24 13 12 26 26 C 1.53002 * 110.34652 * 241.07582 * 24 13 12 27 27 C 1.48145 * 127.83747 * 180.02562 * 11 9 8 28 28 H 1.09009 * 109.46830 * 270.02019 * 1 2 3 29 29 H 1.09004 * 109.47442 * 30.01912 * 1 2 3 30 30 H 1.09000 * 109.47334 * 150.02131 * 1 2 3 31 31 H 1.07997 * 119.61503 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.42392 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.78781 * 180.27489 * 6 5 4 34 34 H 1.09000 * 109.46929 * 324.99506 * 8 7 2 35 35 H 1.09004 * 109.46686 * 205.00016 * 8 7 2 36 36 H 1.09006 * 110.37713 * 100.78984 * 12 11 9 37 37 H 1.09000 * 110.50876 * 338.30964 * 12 11 9 38 38 H 0.96995 * 120.00290 * 92.39612 * 15 13 12 39 39 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47137 * 59.99801 * 25 24 13 41 41 H 1.08994 * 109.47598 * 180.02562 * 25 24 13 42 42 H 1.09009 * 109.47352 * 300.00751 * 25 24 13 43 43 H 1.09007 * 109.46717 * 59.99474 * 26 24 13 44 44 H 1.08993 * 109.47305 * 179.97438 * 26 24 13 45 45 H 1.08995 * 109.46641 * 299.99935 * 26 24 13 46 46 H 1.09000 * 110.40694 * 21.62868 * 27 11 9 47 47 H 1.08998 * 110.50259 * 259.25652 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5765 -1.1902 0.0058 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0785 -2.8811 -1.4133 10 8 1.4025 -2.1591 -2.3322 11 7 0.3975 -4.0183 -1.6575 12 6 -0.0800 -5.0203 -0.6737 13 6 0.1664 -6.3825 -1.3573 14 1 1.1223 -6.7987 -1.0392 15 7 -0.9218 -7.3126 -1.0464 16 6 -0.8580 -8.0892 0.0797 17 1 -0.0052 -8.0162 0.7384 18 6 -1.8894 -8.9702 0.3746 19 7 -2.9284 -9.0595 -0.4284 20 14 -1.8021 -10.0301 1.9103 21 1 -1.7212 -9.1580 3.1096 22 1 -3.0181 -10.8779 1.9965 23 1 -0.5976 -10.8963 1.8461 24 6 0.1925 -6.0735 -2.8687 25 6 1.5530 -6.4422 -3.4636 26 6 -0.9261 -6.8318 -3.5860 27 6 -0.0415 -4.5510 -2.9683 28 1 -0.3633 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9752 2.1530 -0.0009 32 1 5.3057 0.0804 -0.0005 33 1 4.1368 -2.1135 0.0103 34 1 0.5267 -2.4007 0.5915 35 1 2.0629 -3.2864 0.4363 36 1 -1.1428 -4.8811 -0.4756 37 1 0.4923 -4.9501 0.2513 38 1 -1.6857 -7.3813 -1.6402 39 1 -3.6490 -9.6754 -0.2225 40 1 1.7383 -7.5060 -3.3150 41 1 1.5559 -6.2180 -4.5303 42 1 2.3343 -5.8648 -2.9692 43 1 -1.8903 -6.5287 -3.1777 44 1 -0.8949 -6.6032 -4.6513 45 1 -0.7903 -7.9034 -3.4399 46 1 0.5598 -4.1259 -3.7720 47 1 -1.0980 -4.3389 -3.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996296937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:54 Heat of formation + Delta-G solvation = 14.544336 kcal Electronic energy + Delta-G solvation = -27007.967376 eV Core-core repulsion = 23383.971097 eV Total energy + Delta-G solvation = -3623.996279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70003 -39.76269 -37.98396 -34.15923 -33.88906 -33.14654 -33.05735 -30.86067 -29.12915 -27.71798 -27.47425 -26.91052 -25.67328 -23.91320 -22.82933 -22.04786 -21.60064 -19.12766 -18.45340 -17.39915 -16.95969 -16.82158 -16.48163 -15.59702 -15.48059 -14.85759 -14.63700 -14.30353 -14.09339 -13.92342 -13.85144 -13.32089 -13.23650 -13.16871 -12.77171 -12.56737 -12.52725 -12.35968 -12.18383 -11.95460 -11.74773 -11.64349 -11.46972 -11.25109 -11.00701 -10.95358 -10.57372 -10.51332 -10.26897 -10.00160 -9.91944 -9.72299 -9.62077 -9.53499 -9.06815 -8.86140 -8.43936 -7.10673 -5.88894 -3.19001 0.98893 1.19591 2.76092 3.13721 3.36362 3.41698 3.42535 3.71255 4.20893 4.48320 4.49401 4.64582 4.70015 4.79096 4.87577 5.03288 5.06896 5.16335 5.23477 5.33129 5.43857 5.45642 5.48936 5.52462 5.60026 5.61476 5.64569 5.78356 5.85969 5.95393 5.96231 6.01529 6.05040 6.11721 6.15611 6.22277 6.27143 6.28648 6.39542 6.46685 6.57859 6.61834 6.79649 6.90640 7.58955 7.79516 7.90638 8.28662 8.32203 9.41663 9.96387 10.31171 11.33107 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003201 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.474355 B = 8744.604379 C = 9541.829029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.098 3.902 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.111 4.111 8 C -0.097 4.097 9 C 0.534 3.466 10 O -0.547 6.547 11 N -0.618 5.618 12 C 0.074 3.926 13 C 0.176 3.824 14 H 0.062 0.938 15 N -0.716 5.716 16 C -0.249 4.249 17 H 0.070 0.930 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.131 4.131 27 C 0.117 3.883 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.391 0.609 39 H 0.257 0.743 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 13.801 -0.788 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 N -0.196 5.196 4 C -0.060 4.060 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.113 4.113 8 C -0.137 4.137 9 C 0.322 3.678 10 O -0.425 6.425 11 N -0.352 5.352 12 C -0.052 4.052 13 C 0.063 3.937 14 H 0.080 0.920 15 N -0.359 5.359 16 C -0.380 4.380 17 H 0.088 0.912 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.737 3.263 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.089 4.089 25 C -0.187 4.187 26 C -0.188 4.188 27 C -0.005 4.005 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.229 0.771 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.958 14.932 -1.098 17.982 hybrid contribution 0.317 -1.505 0.793 1.730 sum 10.275 13.427 -0.305 16.910 Atomic orbital electron populations 1.20759 0.89042 1.03776 1.02844 1.21060 0.96868 0.87692 0.93663 1.67511 1.10073 1.29093 1.12884 1.22684 0.89518 0.98360 0.95392 1.22050 1.01305 0.93380 1.03251 1.21450 0.93590 0.98607 0.95081 1.20128 0.94221 0.94985 1.01988 1.20604 1.02163 0.95363 0.95610 1.19952 0.77504 0.79656 0.90660 1.90701 1.54693 1.50815 1.46321 1.49076 1.54526 1.21347 1.10220 1.23752 0.99953 0.89335 0.92142 1.21102 0.93480 0.88643 0.90429 0.92012 1.42721 1.21216 1.44033 1.27916 1.19206 1.03520 1.15175 1.00103 0.91185 1.24738 0.96819 1.00032 0.98816 1.69638 1.09638 1.40320 1.38120 0.86286 0.76848 0.80265 0.82852 1.21192 1.21683 1.21223 1.21741 0.96381 0.93507 0.97315 1.21782 0.95593 1.01573 0.99780 1.21686 0.97530 1.01557 0.98072 1.22414 0.99517 0.92877 0.85719 0.90251 0.90341 0.90791 0.82929 0.84897 0.84946 0.87524 0.87774 0.90351 0.91203 0.77091 0.93289 0.92135 0.93065 0.93179 0.91945 0.93622 0.90862 0.90620 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.39 36.01 0.34 -0.88 16 2 C 0.14 1.92 6.78 -82.59 -0.56 1.36 16 3 N -0.49 -6.56 10.27 -9.48 -0.10 -6.66 16 4 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 5 C -0.18 -1.81 10.11 -39.44 -0.40 -2.21 16 6 C -0.06 -0.69 9.84 -39.28 -0.39 -1.08 16 7 C -0.11 -1.40 4.39 -104.48 -0.46 -1.86 16 8 C -0.10 -1.15 4.14 -29.03 -0.12 -1.27 16 9 C 0.53 8.01 7.13 -10.99 -0.08 7.93 16 10 O -0.55 -9.99 16.30 5.56 0.09 -9.90 16 11 N -0.62 -9.22 3.32 -169.19 -0.56 -9.78 16 12 C 0.07 1.16 6.64 -2.32 -0.02 1.14 16 13 C 0.18 3.11 3.33 -66.53 -0.22 2.89 16 14 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 15 N -0.72 -15.92 4.61 -52.07 -0.24 -16.16 16 16 C -0.25 -6.29 9.96 -15.06 -0.15 -6.44 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.20 13.06 55.49 0.72 -25.48 16 20 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.09 -1.34 1.03 -153.12 -0.16 -1.50 16 25 C -0.13 -1.80 8.24 37.16 0.31 -1.50 16 26 C -0.13 -2.06 7.11 37.16 0.26 -1.79 16 27 C 0.12 1.75 6.14 -2.42 -0.01 1.73 16 28 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.88 6.15 -51.93 -0.32 0.56 16 31 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.11 1.11 7.00 -51.93 -0.36 0.75 16 35 H 0.10 1.06 7.87 -51.93 -0.41 0.65 16 36 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 37 H 0.07 0.99 7.31 -51.93 -0.38 0.61 16 38 H 0.39 9.20 5.04 -40.82 -0.21 8.99 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.06 1.05 6.95 -51.92 -0.36 0.69 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.30 7.74 -51.93 -0.40 0.90 16 46 H 0.08 1.14 7.60 -51.93 -0.39 0.74 16 47 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -30.93 377.75 -8.77 -39.70 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.41 Total: 9.43 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.95 Total: -2.88 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.17 Total: -58.08 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.93 -8.77 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996296937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.242 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds