Wall clock time and date at job start Tue Mar 31 2020 11:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31884 * 119.61450 * 2 1 4 4 C 1.31856 * 121.72362 * 180.02562 * 3 2 1 5 5 C 1.38220 * 120.76515 * 359.97438 * 4 3 2 6 6 C 1.38631 * 119.15890 * 359.72782 * 5 4 3 7 7 C 1.38173 * 119.61708 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.41927 * 359.97438 * 7 2 1 9 9 C 1.50699 * 109.47240 * 85.00133 * 8 7 2 10 10 O 1.21275 * 119.99880 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.48316 * 127.76993 * 359.93090 * 11 9 8 13 13 C 1.54383 * 104.53880 * 219.51449 * 12 11 9 14 14 H 1.09003 * 110.34402 * 95.17890 * 13 12 11 15 15 N 1.46494 * 110.34862 * 217.34062 * 13 12 11 16 16 C 1.36945 * 119.99612 * 272.12721 * 15 13 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 13 19 19 N 1.31617 * 120.00227 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99973 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47086 * 300.00269 * 20 18 16 24 24 C 1.54288 * 105.05439 * 336.26315 * 13 12 11 25 25 C 1.52995 * 110.34734 * 118.81324 * 24 13 12 26 26 C 1.53002 * 110.34652 * 241.07582 * 24 13 12 27 27 C 1.48145 * 127.83747 * 180.02562 * 11 9 8 28 28 H 1.09009 * 109.46830 * 270.02019 * 1 2 3 29 29 H 1.09004 * 109.47442 * 30.01912 * 1 2 3 30 30 H 1.09000 * 109.47334 * 150.02131 * 1 2 3 31 31 H 1.07997 * 119.61503 * 179.97438 * 4 3 2 32 32 H 1.08003 * 120.42392 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.78781 * 180.27489 * 6 5 4 34 34 H 1.09000 * 109.46929 * 324.99506 * 8 7 2 35 35 H 1.09004 * 109.46686 * 205.00016 * 8 7 2 36 36 H 1.09006 * 110.37713 * 100.78984 * 12 11 9 37 37 H 1.09000 * 110.50876 * 338.30964 * 12 11 9 38 38 H 0.96995 * 120.00290 * 92.39612 * 15 13 12 39 39 H 0.97005 * 120.00046 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47137 * 59.99801 * 25 24 13 41 41 H 1.08994 * 109.47598 * 180.02562 * 25 24 13 42 42 H 1.09009 * 109.47352 * 300.00751 * 25 24 13 43 43 H 1.09007 * 109.46717 * 59.99474 * 26 24 13 44 44 H 1.08993 * 109.47305 * 179.97438 * 26 24 13 45 45 H 1.08995 * 109.46641 * 299.99935 * 26 24 13 46 46 H 1.09000 * 110.40694 * 21.62868 * 27 11 9 47 47 H 1.08998 * 110.50259 * 259.25652 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4764 1.1951 -0.0005 5 6 4.2267 0.0342 -0.0005 6 6 3.5765 -1.1902 0.0058 7 6 2.1899 -1.2012 0.0005 8 6 1.4372 -2.5068 0.0017 9 6 1.0785 -2.8811 -1.4133 10 8 1.4025 -2.1591 -2.3322 11 7 0.3975 -4.0183 -1.6575 12 6 -0.0800 -5.0203 -0.6737 13 6 0.1664 -6.3825 -1.3573 14 1 1.1223 -6.7987 -1.0392 15 7 -0.9218 -7.3126 -1.0464 16 6 -0.8580 -8.0892 0.0797 17 1 -0.0052 -8.0162 0.7384 18 6 -1.8894 -8.9702 0.3746 19 7 -2.9284 -9.0595 -0.4284 20 14 -1.8021 -10.0301 1.9103 21 1 -1.7212 -9.1580 3.1096 22 1 -3.0181 -10.8779 1.9965 23 1 -0.5976 -10.8963 1.8461 24 6 0.1925 -6.0735 -2.8687 25 6 1.5530 -6.4422 -3.4636 26 6 -0.9261 -6.8318 -3.5860 27 6 -0.0415 -4.5510 -2.9683 28 1 -0.3633 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.9752 2.1530 -0.0009 32 1 5.3057 0.0804 -0.0005 33 1 4.1368 -2.1135 0.0103 34 1 0.5267 -2.4007 0.5915 35 1 2.0629 -3.2864 0.4363 36 1 -1.1428 -4.8811 -0.4756 37 1 0.4923 -4.9501 0.2513 38 1 -1.6857 -7.3813 -1.6402 39 1 -3.6490 -9.6754 -0.2225 40 1 1.7383 -7.5060 -3.3150 41 1 1.5559 -6.2180 -4.5303 42 1 2.3343 -5.8648 -2.9692 43 1 -1.8903 -6.5287 -3.1777 44 1 -0.8949 -6.6032 -4.6513 45 1 -0.7903 -7.9034 -3.4399 46 1 0.5598 -4.1259 -3.7720 47 1 -1.0980 -4.3389 -3.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996296937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:53 Heat of formation + Delta-G solvation = -3.353062 kcal Electronic energy + Delta-G solvation = -27008.743466 eV Core-core repulsion = 23383.971097 eV Total energy + Delta-G solvation = -3624.772369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69135 -40.90714 -39.25810 -35.81367 -34.89952 -34.43967 -33.90412 -32.62144 -30.10069 -29.13505 -28.42385 -28.22488 -26.78759 -25.67003 -23.76745 -23.21380 -22.70692 -20.33824 -19.80124 -19.14836 -18.05665 -17.85036 -17.32718 -16.94967 -16.60811 -16.31591 -15.82654 -15.51296 -15.42783 -15.24522 -15.10114 -14.67781 -14.19087 -14.07498 -14.00068 -13.91754 -13.40550 -13.37393 -13.23162 -13.16978 -13.08025 -12.97445 -12.76969 -12.68289 -12.48392 -12.34163 -12.08858 -12.04497 -11.87343 -11.43874 -11.31355 -11.08686 -10.89332 -10.62284 -10.40752 -9.74430 -9.72315 -8.95611 -7.89153 -5.17124 0.13693 0.35288 1.53390 1.53954 1.59146 1.60059 1.96923 2.60977 2.83086 3.39628 3.43305 3.46605 3.61783 3.78476 3.86112 3.86810 3.95257 3.96879 4.10704 4.14859 4.37888 4.43452 4.45379 4.51560 4.59576 4.60548 4.63952 4.67139 4.68138 4.78088 4.78817 4.87569 4.90535 5.01530 5.03388 5.11238 5.13210 5.17638 5.23734 5.30849 5.34892 5.45004 5.53014 5.62493 5.80725 6.32700 6.58158 7.04936 7.12320 7.41230 8.15343 8.39109 9.33668 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003201 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.474355 B = 8744.604379 C = 9541.829029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.121 3.879 3 N -0.514 5.514 4 C 0.086 3.914 5 C -0.176 4.176 6 C -0.072 4.072 7 C -0.128 4.128 8 C -0.091 4.091 9 C 0.536 3.464 10 O -0.580 6.580 11 N -0.615 5.615 12 C 0.087 3.913 13 C 0.169 3.831 14 H 0.060 0.940 15 N -0.726 5.726 16 C -0.239 4.239 17 H 0.079 0.921 18 C -0.069 4.069 19 N -0.967 5.967 20 Si 0.965 3.035 21 H -0.277 1.277 22 H -0.302 1.302 23 H -0.281 1.281 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.123 4.123 27 C 0.119 3.881 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.383 0.617 39 H 0.249 0.751 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 14.576 -0.110 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 N -0.224 5.224 4 C -0.070 4.070 5 C -0.196 4.196 6 C -0.097 4.097 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.326 3.674 10 O -0.460 6.460 11 N -0.348 5.348 12 C -0.039 4.039 13 C 0.059 3.941 14 H 0.078 0.922 15 N -0.368 5.368 16 C -0.370 4.370 17 H 0.097 0.903 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.203 1.203 22 H -0.229 1.229 23 H -0.207 1.207 24 C -0.083 4.083 25 C -0.181 4.181 26 C -0.181 4.181 27 C -0.004 4.004 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.197 0.803 32 H 0.183 0.817 33 H 0.170 0.830 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.219 0.781 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.115 15.735 -0.410 19.863 hybrid contribution -0.232 -1.645 0.520 1.740 sum 11.883 14.091 0.110 18.433 Atomic orbital electron populations 1.20744 0.88614 1.03058 1.03702 1.21323 0.97572 0.88183 0.94523 1.67515 1.11468 1.29489 1.13954 1.23248 0.89030 1.00134 0.94625 1.22427 1.02941 0.92573 1.01619 1.21823 0.93342 1.00015 0.94554 1.20260 0.95054 0.94852 1.02837 1.20625 1.03161 0.95804 0.93473 1.20479 0.76454 0.78807 0.91642 1.90688 1.55943 1.51646 1.47741 1.49061 1.54480 1.21383 1.09877 1.23417 0.99559 0.88172 0.92736 1.21286 0.91837 0.88643 0.92370 0.92159 1.42858 1.22106 1.44764 1.27120 1.19603 1.02953 1.14122 1.00371 0.90293 1.25433 0.97109 1.02056 1.01598 1.69788 1.10446 1.41520 1.39953 0.85339 0.76217 0.78728 0.80211 1.20333 1.22900 1.20725 1.21678 0.97147 0.93746 0.95688 1.21729 0.94444 1.01186 1.00786 1.21578 0.96895 0.99920 0.99677 1.22382 0.99648 0.92349 0.86016 0.88612 0.90860 0.91590 0.80291 0.81684 0.83022 0.86236 0.85659 0.91734 0.89166 0.78075 0.94190 0.92705 0.91385 0.92903 0.93536 0.91101 0.93260 0.90377 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.33 9.39 71.24 0.67 -1.66 16 2 C 0.12 3.11 6.78 42.54 0.29 3.40 16 3 N -0.51 -13.40 10.27 -183.90 -1.89 -15.29 16 4 C 0.09 1.74 11.18 84.68 0.95 2.69 16 5 C -0.18 -3.07 10.11 22.36 0.23 -2.85 16 6 C -0.07 -1.44 9.84 22.47 0.22 -1.21 16 7 C -0.13 -3.01 4.39 -19.78 -0.09 -3.10 16 8 C -0.09 -1.96 4.14 29.10 0.12 -1.83 16 9 C 0.54 15.22 7.13 87.66 0.63 15.84 16 10 O -0.58 -20.55 16.30 -3.01 -0.05 -20.60 16 11 N -0.62 -17.38 3.32 -807.58 -2.68 -20.06 16 12 C 0.09 2.58 6.64 86.50 0.57 3.15 16 13 C 0.17 5.80 3.33 45.90 0.15 5.95 16 14 H 0.06 2.10 7.67 -2.39 -0.02 2.08 16 15 N -0.73 -32.23 4.61 -318.66 -1.47 -33.70 16 16 C -0.24 -11.92 9.96 84.03 0.84 -11.08 16 17 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 18 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 19 N -0.97 -55.55 13.06 21.65 0.28 -55.27 16 20 Si 0.97 43.34 29.55 68.60 2.03 45.36 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.08 -2.38 1.03 -51.28 -0.05 -2.43 16 25 C -0.12 -3.21 8.24 71.98 0.59 -2.62 16 26 C -0.12 -3.83 7.11 71.98 0.51 -3.32 16 27 C 0.12 3.38 6.14 86.52 0.53 3.91 16 28 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.54 6.15 -2.39 -0.01 1.53 16 31 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.12 2.25 7.00 -2.39 -0.02 2.23 16 35 H 0.13 2.15 7.87 -2.39 -0.02 2.13 16 36 H 0.06 2.15 8.06 -2.38 -0.02 2.13 16 37 H 0.09 2.33 7.31 -2.39 -0.02 2.31 16 38 H 0.38 18.32 5.04 -92.71 -0.47 17.85 16 39 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.05 1.58 6.95 -2.38 -0.02 1.57 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.77 7.74 -2.39 -0.02 1.75 16 46 H 0.08 2.22 7.60 -2.39 -0.02 2.20 16 47 H 0.07 1.97 7.83 -2.39 -0.02 1.95 16 Total: -1.00 -66.75 377.75 3.34 -63.41 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.50 Total: 34.54 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.63 Total: 1.61 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -5.76 Total: -124.32 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -66.75 3.34 -63.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996296937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.057 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds