Wall clock time and date at job start Tue Mar 31 2020 11:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31691 * 119.72199 * 2 1 4 4 C 1.31928 * 121.88312 * 180.31400 * 3 2 1 5 5 C 1.38349 * 121.07738 * 359.65297 * 4 3 2 6 6 C 1.38352 * 119.30510 * 0.02764 * 5 4 3 7 7 C 1.39527 * 119.71651 * 179.68602 * 2 1 3 8 8 C 1.47839 * 120.55697 * 359.97438 * 7 2 1 9 9 O 1.21555 * 119.99968 * 354.26216 * 8 7 2 10 10 N 1.34773 * 120.00141 * 174.25183 * 8 7 2 11 11 C 1.46500 * 120.00109 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47247 * 35.00471 * 11 10 8 13 13 C 1.53005 * 109.47070 * 275.00450 * 11 10 8 14 14 C 1.53002 * 109.47011 * 155.00438 * 11 10 8 15 15 C 1.53038 * 109.46222 * 179.97438 * 14 11 10 16 16 C 1.53184 * 109.31593 * 181.37478 * 15 14 11 17 17 N 1.46922 * 108.77409 * 305.36489 * 16 15 14 18 18 C 1.36938 * 120.63362 * 233.58946 * 17 16 15 19 19 H 1.08005 * 119.99985 * 32.54138 * 18 17 16 20 20 C 1.38807 * 120.00193 * 212.54776 * 18 17 16 21 21 N 1.31624 * 120.00128 * 22.37477 * 20 18 17 22 22 Si 1.86806 * 120.00236 * 202.09904 * 20 18 17 23 23 H 1.48500 * 109.46941 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47158 * 119.99628 * 22 20 18 25 25 H 1.48504 * 109.47017 * 239.99756 * 22 20 18 26 26 C 1.46931 * 118.74037 * 53.85820 * 17 16 15 27 27 C 1.53036 * 109.44982 * 300.05988 * 14 11 10 28 28 H 1.09002 * 109.47419 * 266.16035 * 1 2 3 29 29 H 1.09009 * 109.46856 * 26.16139 * 1 2 3 30 30 H 1.08998 * 109.47430 * 146.15347 * 1 2 3 31 31 H 1.08001 * 119.45877 * 179.67576 * 4 3 2 32 32 H 1.07997 * 120.34762 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.85724 * 180.02562 * 6 5 4 34 34 H 0.97005 * 119.99970 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.46971 * 299.99851 * 13 11 10 36 36 H 1.08998 * 109.46926 * 60.00004 * 13 11 10 37 37 H 1.09000 * 109.46634 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.45966 * 60.02881 * 14 11 10 39 39 H 1.09003 * 109.49685 * 61.41918 * 15 14 11 40 40 H 1.09009 * 109.49902 * 301.32500 * 15 14 11 41 41 H 1.09001 * 109.58599 * 185.57896 * 16 15 14 42 42 H 1.08998 * 109.70635 * 65.22401 * 16 15 14 43 43 H 0.97001 * 119.99452 * 5.63847 * 21 20 18 44 44 H 1.09004 * 109.58347 * 65.92736 * 26 17 16 45 45 H 1.09001 * 109.58858 * 186.35066 * 26 17 16 46 46 H 1.08993 * 109.50134 * 298.57752 * 27 14 11 47 47 H 1.09006 * 109.49539 * 58.67444 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 -0.0061 5 6 4.2365 0.0363 -0.0057 6 6 3.5987 -1.1914 0.0007 7 6 2.1986 -1.2118 0.0066 8 6 1.4655 -2.4956 0.0142 9 8 0.2546 -2.5034 0.1200 10 7 2.1398 -3.6573 -0.0963 11 6 1.4133 -4.9294 -0.0893 12 1 0.4546 -4.8031 -0.5922 13 6 1.1767 -5.3737 1.3556 14 6 2.2370 -5.9911 -0.8209 15 6 1.4782 -7.3201 -0.8130 16 6 2.3208 -8.3889 -1.5161 17 7 2.6756 -7.9047 -2.8571 18 6 2.4038 -8.6602 -3.9663 19 1 1.5320 -9.2975 -3.9852 20 6 3.2487 -8.6072 -5.0663 21 7 4.4960 -8.2132 -4.9198 22 14 2.6178 -9.1025 -6.7535 23 1 1.1937 -9.5104 -6.6492 24 1 2.7366 -7.9513 -7.6840 25 1 3.4217 -10.2401 -7.2682 26 6 3.3332 -6.5969 -2.9850 27 6 2.4747 -5.5456 -2.2656 28 1 -0.3634 -0.0688 1.0254 29 1 -0.3633 0.9225 -0.4531 30 1 -0.3634 -0.8535 -0.5724 31 1 3.9735 2.1532 -0.0112 32 1 5.3151 0.0908 -0.0104 33 1 4.1660 -2.1104 0.0016 34 1 3.1062 -3.6511 -0.1805 35 1 2.1354 -5.5000 1.8585 36 1 0.5899 -4.6173 1.8767 37 1 0.6357 -6.3200 1.3607 38 1 3.1955 -6.1177 -0.3175 39 1 0.5302 -7.2009 -1.3376 40 1 1.2891 -7.6250 0.2164 41 1 1.7452 -9.3106 -1.6009 42 1 3.2289 -8.5766 -0.9432 43 1 4.8483 -8.0384 -4.0331 44 1 4.3222 -6.6391 -2.5285 45 1 3.4258 -6.3360 -4.0392 46 1 1.5176 -5.4427 -2.7767 47 1 2.9948 -4.5876 -2.2699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997283066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:39 Heat of formation + Delta-G solvation = 7.850618 kcal Electronic energy + Delta-G solvation = -26916.338542 eV Core-core repulsion = 23292.052002 eV Total energy + Delta-G solvation = -3624.286541 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02006 -39.48631 -38.03765 -35.63871 -33.74182 -32.87726 -32.58209 -30.86529 -30.38816 -28.80125 -27.83373 -25.46424 -24.80973 -23.15875 -22.36866 -22.21269 -20.99545 -20.52198 -19.27110 -17.97359 -17.31830 -17.03503 -16.42946 -15.84384 -15.34637 -15.03791 -14.55622 -14.30688 -14.15605 -13.75228 -13.57402 -13.53263 -13.47985 -13.38208 -13.17560 -12.68272 -12.58000 -12.49796 -12.43101 -12.12117 -11.71120 -11.56044 -11.41626 -10.85993 -10.69820 -10.44287 -10.28153 -10.22031 -10.13392 -10.10793 -9.98063 -9.80502 -9.54010 -9.36716 -9.25058 -8.99219 -8.39485 -6.86411 -6.06222 -3.30163 0.38352 0.87250 2.70656 2.99730 3.49577 3.52209 3.55107 3.65753 4.00603 4.36097 4.40223 4.46928 4.57617 4.71843 4.83038 5.07679 5.12073 5.17353 5.25843 5.29864 5.43471 5.45376 5.49342 5.60232 5.62907 5.67105 5.70484 5.83884 5.85423 5.93408 6.01186 6.02924 6.14456 6.16718 6.29769 6.36425 6.42283 6.47512 6.52599 6.60848 6.71571 6.81473 7.03389 7.15575 7.37132 7.62069 8.04121 8.07931 8.58102 9.11582 9.82914 10.29417 11.20222 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003057 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.636624 B = 9157.218469 C = 9870.727046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.189 3.811 3 N -0.492 5.492 4 C 0.126 3.874 5 C -0.189 4.189 6 C -0.038 4.038 7 C -0.190 4.190 8 C 0.563 3.437 9 O -0.529 6.529 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.089 0.911 13 C -0.162 4.162 14 C -0.084 4.084 15 C -0.125 4.125 16 C 0.147 3.853 17 N -0.599 5.599 18 C -0.348 4.348 19 H 0.053 0.947 20 C -0.023 4.023 21 N -0.918 5.918 22 Si 1.070 2.930 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.154 3.846 27 C -0.129 4.129 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.268 0.732 44 H 0.015 0.985 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 14.920 13.213 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.051 3.949 3 N -0.202 5.202 4 C -0.031 4.031 5 C -0.208 4.208 6 C -0.065 4.065 7 C -0.195 4.195 8 C 0.350 3.650 9 O -0.408 6.408 10 N -0.364 5.364 11 C 0.042 3.958 12 H 0.107 0.893 13 C -0.220 4.220 14 C -0.103 4.103 15 C -0.165 4.165 16 C 0.021 3.979 17 N -0.323 5.323 18 C -0.478 4.478 19 H 0.071 0.929 20 C -0.225 4.225 21 N -0.558 5.558 22 Si 0.900 3.100 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.221 1.221 26 C 0.028 3.972 27 C -0.168 4.168 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.232 0.768 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.390 15.532 11.656 19.566 hybrid contribution 0.887 -0.662 1.648 1.985 sum -1.503 14.871 13.304 20.010 Atomic orbital electron populations 1.21123 0.87495 1.04345 1.04099 1.21573 0.97694 0.86531 0.89098 1.67675 1.09977 1.28748 1.13766 1.23009 0.89467 0.98812 0.91853 1.22093 1.01915 0.93035 1.03794 1.21802 0.93177 0.99074 0.92405 1.20844 0.94411 0.95234 1.09028 1.17968 0.87098 0.83352 0.76625 1.90711 1.13389 1.86971 1.49700 1.46035 1.10785 1.05819 1.73775 1.21177 0.96583 0.81822 0.96251 0.89316 1.22209 1.01799 1.01860 0.96158 1.21326 0.98353 0.94312 0.96344 1.22066 0.99634 0.95112 0.99663 1.20902 0.95504 0.94613 0.86895 1.44104 1.71203 1.15661 1.01317 1.20003 1.07302 1.25629 0.94837 0.92877 1.25927 0.93645 0.99425 1.03531 1.70729 1.12587 1.45982 1.26518 0.83453 0.74605 0.76354 0.75566 1.21783 1.21672 1.22054 1.20991 0.92286 0.84416 0.99548 1.22181 1.01414 0.98459 0.94744 0.89995 0.91280 0.87461 0.82229 0.84043 0.84357 0.76754 0.92694 0.92520 0.91010 0.91537 0.92022 0.92498 0.92623 0.96773 0.92052 0.96685 0.90740 0.92246 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.99 36.00 0.32 -0.99 16 2 C 0.19 2.30 6.82 -82.17 -0.56 1.74 16 3 N -0.49 -5.69 10.26 -9.15 -0.09 -5.78 16 4 C 0.13 1.10 11.17 -17.47 -0.20 0.90 16 5 C -0.19 -1.45 10.10 -39.50 -0.40 -1.85 16 6 C -0.04 -0.34 9.64 -38.87 -0.37 -0.72 16 7 C -0.19 -2.20 5.89 -104.82 -0.62 -2.82 16 8 C 0.56 7.34 7.68 -12.33 -0.09 7.25 16 9 O -0.53 -8.18 12.98 5.32 0.07 -8.11 16 10 N -0.71 -8.40 4.32 -54.75 -0.24 -8.64 16 11 C 0.15 1.91 2.16 -67.93 -0.15 1.76 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 13 C -0.16 -1.88 9.13 37.16 0.34 -1.54 16 14 C -0.08 -1.25 1.78 -90.58 -0.16 -1.41 16 15 C -0.13 -2.03 5.04 -26.62 -0.13 -2.16 16 16 C 0.15 2.98 6.51 -3.72 -0.02 2.96 16 17 N -0.60 -14.62 2.79 -172.06 -0.48 -15.10 16 18 C -0.35 -9.63 9.47 -15.06 -0.14 -9.77 16 19 H 0.05 1.49 7.92 -52.48 -0.42 1.07 16 20 C -0.02 -0.65 4.73 -17.43 -0.08 -0.73 16 21 N -0.92 -27.19 12.56 55.49 0.70 -26.50 16 22 Si 1.07 25.25 29.97 -169.99 -5.10 20.15 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.15 3.44 4.73 -3.49 -0.02 3.43 16 27 C -0.13 -2.27 5.24 -26.39 -0.14 -2.41 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.11 1.39 5.66 -51.93 -0.29 1.10 16 31 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.14 0.93 6.56 -52.49 -0.34 0.58 16 34 H 0.40 3.89 6.52 -40.82 -0.27 3.63 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.78 6.36 -51.92 -0.33 0.45 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.27 7.98 6.68 -40.82 -0.27 7.70 16 44 H 0.02 0.34 7.82 -51.93 -0.41 -0.06 16 45 H 0.07 1.91 6.56 -51.93 -0.34 1.57 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.73 7.40 -51.93 -0.38 0.35 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -32.36 367.90 -9.23 -41.60 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.21 Total: 3.20 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.42 Total: -6.37 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.11 Total: -56.02 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.07 Total: -8.11 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.36 -9.23 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997283066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.447 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds