Wall clock time and date at job start Tue Mar 31 2020 11:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31691 * 119.72199 * 2 1 4 4 C 1.31928 * 121.88312 * 180.31400 * 3 2 1 5 5 C 1.38349 * 121.07738 * 359.65297 * 4 3 2 6 6 C 1.38352 * 119.30510 * 0.02764 * 5 4 3 7 7 C 1.39527 * 119.71651 * 179.68602 * 2 1 3 8 8 C 1.47839 * 120.55697 * 359.97438 * 7 2 1 9 9 O 1.21555 * 119.99968 * 354.26216 * 8 7 2 10 10 N 1.34773 * 120.00141 * 174.25183 * 8 7 2 11 11 C 1.46500 * 120.00109 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.47247 * 35.00471 * 11 10 8 13 13 C 1.53005 * 109.47070 * 275.00450 * 11 10 8 14 14 C 1.53002 * 109.47011 * 155.00438 * 11 10 8 15 15 C 1.53038 * 109.46222 * 179.97438 * 14 11 10 16 16 C 1.53184 * 109.31593 * 181.37478 * 15 14 11 17 17 N 1.46922 * 108.77409 * 305.36489 * 16 15 14 18 18 C 1.36938 * 120.63362 * 233.58946 * 17 16 15 19 19 H 1.08005 * 119.99985 * 32.54138 * 18 17 16 20 20 C 1.38807 * 120.00193 * 212.54776 * 18 17 16 21 21 N 1.31624 * 120.00128 * 22.37477 * 20 18 17 22 22 Si 1.86806 * 120.00236 * 202.09904 * 20 18 17 23 23 H 1.48500 * 109.46941 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47158 * 119.99628 * 22 20 18 25 25 H 1.48504 * 109.47017 * 239.99756 * 22 20 18 26 26 C 1.46931 * 118.74037 * 53.85820 * 17 16 15 27 27 C 1.53036 * 109.44982 * 300.05988 * 14 11 10 28 28 H 1.09002 * 109.47419 * 266.16035 * 1 2 3 29 29 H 1.09009 * 109.46856 * 26.16139 * 1 2 3 30 30 H 1.08998 * 109.47430 * 146.15347 * 1 2 3 31 31 H 1.08001 * 119.45877 * 179.67576 * 4 3 2 32 32 H 1.07997 * 120.34762 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.85724 * 180.02562 * 6 5 4 34 34 H 0.97005 * 119.99970 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.46971 * 299.99851 * 13 11 10 36 36 H 1.08998 * 109.46926 * 60.00004 * 13 11 10 37 37 H 1.09000 * 109.46634 * 179.97438 * 13 11 10 38 38 H 1.09005 * 109.45966 * 60.02881 * 14 11 10 39 39 H 1.09003 * 109.49685 * 61.41918 * 15 14 11 40 40 H 1.09009 * 109.49902 * 301.32500 * 15 14 11 41 41 H 1.09001 * 109.58599 * 185.57896 * 16 15 14 42 42 H 1.08998 * 109.70635 * 65.22401 * 16 15 14 43 43 H 0.97001 * 119.99452 * 5.63847 * 21 20 18 44 44 H 1.09004 * 109.58347 * 65.92736 * 26 17 16 45 45 H 1.09001 * 109.58858 * 186.35066 * 26 17 16 46 46 H 1.08993 * 109.50134 * 298.57752 * 27 14 11 47 47 H 1.09006 * 109.49539 * 58.67444 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 -0.0061 5 6 4.2365 0.0363 -0.0057 6 6 3.5987 -1.1914 0.0007 7 6 2.1986 -1.2118 0.0066 8 6 1.4655 -2.4956 0.0142 9 8 0.2546 -2.5034 0.1200 10 7 2.1398 -3.6573 -0.0963 11 6 1.4133 -4.9294 -0.0893 12 1 0.4546 -4.8031 -0.5922 13 6 1.1767 -5.3737 1.3556 14 6 2.2370 -5.9911 -0.8209 15 6 1.4782 -7.3201 -0.8130 16 6 2.3208 -8.3889 -1.5161 17 7 2.6756 -7.9047 -2.8571 18 6 2.4038 -8.6602 -3.9663 19 1 1.5320 -9.2975 -3.9852 20 6 3.2487 -8.6072 -5.0663 21 7 4.4960 -8.2132 -4.9198 22 14 2.6178 -9.1025 -6.7535 23 1 1.1937 -9.5104 -6.6492 24 1 2.7366 -7.9513 -7.6840 25 1 3.4217 -10.2401 -7.2682 26 6 3.3332 -6.5969 -2.9850 27 6 2.4747 -5.5456 -2.2656 28 1 -0.3634 -0.0688 1.0254 29 1 -0.3633 0.9225 -0.4531 30 1 -0.3634 -0.8535 -0.5724 31 1 3.9735 2.1532 -0.0112 32 1 5.3151 0.0908 -0.0104 33 1 4.1660 -2.1104 0.0016 34 1 3.1062 -3.6511 -0.1805 35 1 2.1354 -5.5000 1.8585 36 1 0.5899 -4.6173 1.8767 37 1 0.6357 -6.3200 1.3607 38 1 3.1955 -6.1177 -0.3175 39 1 0.5302 -7.2009 -1.3376 40 1 1.2891 -7.6250 0.2164 41 1 1.7452 -9.3106 -1.6009 42 1 3.2289 -8.5766 -0.9432 43 1 4.8483 -8.0384 -4.0331 44 1 4.3222 -6.6391 -2.5285 45 1 3.4258 -6.3360 -4.0392 46 1 1.5176 -5.4427 -2.7767 47 1 2.9948 -4.5876 -2.2699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997283066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:38 Heat of formation + Delta-G solvation = -11.853730 kcal Electronic energy + Delta-G solvation = -26917.192987 eV Core-core repulsion = 23292.052002 eV Total energy + Delta-G solvation = -3625.140985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87198 -40.50450 -39.39478 -37.05262 -34.97190 -33.93389 -33.56028 -32.27466 -31.95340 -30.21507 -28.66847 -27.09804 -25.77223 -24.54369 -23.79092 -23.25360 -22.22066 -21.59252 -20.80156 -19.43578 -18.74759 -17.86138 -17.18787 -16.79309 -16.43889 -16.20859 -16.04463 -15.82194 -15.40271 -15.26428 -15.04736 -14.76485 -14.61524 -14.46146 -14.11360 -14.02760 -13.73100 -13.48885 -13.36603 -13.27979 -13.00577 -12.85886 -12.80267 -12.57519 -12.30990 -12.02978 -11.90882 -11.71614 -11.57900 -11.32378 -11.09739 -11.00191 -10.95406 -10.48918 -10.43500 -10.23566 -9.89965 -8.90023 -8.21310 -5.45665 -0.38051 0.17161 1.56769 1.64201 1.80101 1.80412 2.04173 2.63674 2.77745 3.22132 3.29188 3.53259 3.56375 3.64097 3.73358 3.83884 3.88142 3.94306 4.06364 4.34870 4.38352 4.42741 4.45925 4.51138 4.58244 4.59457 4.66655 4.70109 4.72720 4.80691 4.89950 4.96800 5.00326 5.02568 5.08202 5.09603 5.14392 5.21864 5.24593 5.25415 5.34895 5.48074 5.59262 5.63249 5.86995 6.41747 6.44743 6.88038 7.09766 7.13213 7.78079 8.23870 9.00063 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.003057 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.636624 B = 9157.218469 C = 9870.727046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.167 3.833 3 N -0.516 5.516 4 C 0.121 3.879 5 C -0.178 4.178 6 C -0.039 4.039 7 C -0.208 4.208 8 C 0.561 3.439 9 O -0.560 6.560 10 N -0.706 5.706 11 C 0.156 3.844 12 H 0.066 0.934 13 C -0.155 4.155 14 C -0.072 4.072 15 C -0.114 4.114 16 C 0.142 3.858 17 N -0.620 5.620 18 C -0.355 4.355 19 H 0.043 0.957 20 C -0.073 4.073 21 N -0.943 5.943 22 Si 1.116 2.884 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.289 1.289 26 C 0.160 3.840 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.192 0.808 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.256 0.744 44 H 0.012 0.988 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 15.823 14.540 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 N -0.226 5.226 4 C -0.036 4.036 5 C -0.197 4.197 6 C -0.065 4.065 7 C -0.213 4.213 8 C 0.349 3.651 9 O -0.441 6.441 10 N -0.357 5.357 11 C 0.052 3.948 12 H 0.084 0.916 13 C -0.213 4.213 14 C -0.092 4.092 15 C -0.154 4.154 16 C 0.017 3.983 17 N -0.345 5.345 18 C -0.485 4.485 19 H 0.061 0.939 20 C -0.270 4.270 21 N -0.584 5.584 22 Si 0.941 3.059 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.215 1.215 26 C 0.034 3.966 27 C -0.154 4.154 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.209 0.791 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.274 16.436 13.018 21.006 hybrid contribution 0.598 -0.909 1.275 1.676 sum -0.675 15.527 14.293 21.115 Atomic orbital electron populations 1.20994 0.88093 1.03694 1.03698 1.21616 0.97809 0.87268 0.90385 1.67673 1.11628 1.28532 1.14732 1.23651 0.88673 1.00829 0.90423 1.22508 1.03643 0.91950 1.01602 1.22144 0.92092 1.00843 0.91408 1.20770 0.95651 0.94038 1.10844 1.18240 0.86825 0.84056 0.75957 1.90700 1.14828 1.87443 1.51138 1.45903 1.11313 1.05064 1.73450 1.20915 0.95193 0.81789 0.96929 0.91593 1.22148 1.02701 1.01853 0.94639 1.21199 0.99269 0.94111 0.94572 1.21938 0.98113 0.94443 1.00867 1.21066 0.96174 0.95720 0.85365 1.44364 1.71506 1.16365 1.02220 1.20214 1.06604 1.25410 0.96286 0.93891 1.27189 0.93387 0.99543 1.06847 1.70842 1.13618 1.48306 1.25660 0.82834 0.74948 0.76179 0.71908 1.20143 1.21393 1.21549 1.20860 0.92966 0.85032 0.97738 1.21989 0.99495 0.97970 0.95930 0.90181 0.90785 0.89270 0.79104 0.80427 0.81948 0.75345 0.90997 0.93225 0.90311 0.89867 0.93370 0.88938 0.93545 0.96179 0.93413 0.97042 0.94766 0.94278 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.99 71.23 0.64 -1.93 16 2 C 0.17 4.01 6.82 42.89 0.29 4.30 16 3 N -0.52 -11.30 10.26 -182.85 -1.88 -13.17 16 4 C 0.12 1.77 11.17 84.70 0.95 2.72 16 5 C -0.18 -2.08 10.10 22.32 0.23 -1.86 16 6 C -0.04 -0.58 9.64 22.73 0.22 -0.37 16 7 C -0.21 -4.57 5.89 -19.99 -0.12 -4.69 16 8 C 0.56 14.22 7.68 86.79 0.67 14.88 16 9 O -0.56 -17.55 12.98 -3.89 -0.05 -17.60 16 10 N -0.71 -15.24 4.32 -445.41 -1.92 -17.16 16 11 C 0.16 3.80 2.16 44.99 0.10 3.90 16 12 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 13 C -0.16 -3.18 9.13 71.98 0.66 -2.52 16 14 C -0.07 -2.00 1.78 -10.77 -0.02 -2.02 16 15 C -0.11 -3.50 5.04 30.67 0.15 -3.34 16 16 C 0.14 5.66 6.51 86.36 0.56 6.22 16 17 N -0.62 -30.61 2.79 -698.27 -1.95 -32.56 16 18 C -0.36 -19.99 9.47 84.03 0.80 -19.20 16 19 H 0.04 2.46 7.92 -2.91 -0.02 2.44 16 20 C -0.07 -4.15 4.73 84.86 0.40 -3.75 16 21 N -0.94 -57.00 12.56 21.65 0.27 -56.73 16 22 Si 1.12 51.47 29.97 68.60 2.06 53.52 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 26 C 0.16 7.24 4.73 86.51 0.41 7.65 16 27 C -0.11 -3.96 5.24 30.81 0.16 -3.80 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.09 2.45 5.66 -2.39 -0.01 2.43 16 31 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.16 1.54 6.56 -2.91 -0.02 1.52 16 34 H 0.41 6.77 6.52 -92.70 -0.60 6.17 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.50 6.40 -2.39 -0.02 1.49 16 38 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 2.21 6.36 -2.38 -0.02 2.20 16 41 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.26 15.63 6.68 -92.71 -0.62 15.01 16 44 H 0.01 0.53 7.82 -2.39 -0.02 0.51 16 45 H 0.03 1.80 6.56 -2.39 -0.02 1.79 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 2.09 7.40 -2.38 -0.02 2.07 16 Total: -1.00 -73.23 367.90 3.14 -70.09 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.52 Total: 17.43 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.09 Total: -3.81 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -5.47 Total: -119.62 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.05 Total: -17.60 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.06 Total: 53.52 kcal Total: -73.23 3.14 -70.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997283066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.235 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds