Wall clock time and date at job start Tue Mar 31 2020 11:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 119.55349 * 2 1 4 4 C 1.39800 * 119.00002 * 179.74937 * 3 2 1 5 5 C 1.48153 * 120.92009 * 180.23236 * 4 3 2 6 6 O 1.21506 * 119.99875 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99438 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99467 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46901 * 324.99972 * 8 7 5 10 10 C 1.52996 * 109.47048 * 85.00472 * 8 7 5 11 11 C 1.52999 * 109.46990 * 205.00272 * 8 7 5 12 12 C 1.53041 * 109.46107 * 300.07022 * 11 8 7 13 13 C 1.53192 * 109.31358 * 178.61256 * 12 11 8 14 14 N 1.46924 * 108.77438 * 54.63595 * 13 12 11 15 15 C 1.36936 * 120.63158 * 126.41427 * 14 13 12 16 16 H 1.07997 * 119.99857 * 207.66628 * 15 14 13 17 17 C 1.38813 * 120.00175 * 27.65745 * 15 14 13 18 18 N 1.31620 * 119.99536 * 17.37056 * 17 15 14 19 19 Si 1.86793 * 120.00133 * 197.36949 * 17 15 14 20 20 H 1.48495 * 109.47282 * 90.00401 * 19 17 15 21 21 H 1.48504 * 109.47060 * 210.00051 * 19 17 15 22 22 H 1.48500 * 109.47092 * 330.00087 * 19 17 15 23 23 C 1.46928 * 118.73607 * 306.38909 * 14 13 12 24 24 C 1.53035 * 109.45990 * 179.97438 * 11 8 7 25 25 C 1.39837 * 118.15470 * 0.25665 * 4 3 2 26 26 C 1.38127 * 119.00137 * 359.97438 * 25 4 3 27 27 N 1.31797 * 119.55133 * 180.29591 * 2 1 3 28 28 H 1.09001 * 109.47377 * 89.99557 * 1 2 3 29 29 H 1.09001 * 109.47183 * 209.99749 * 1 2 3 30 30 H 1.08995 * 109.46990 * 329.99657 * 1 2 3 31 31 H 1.08000 * 120.50064 * 0.03047 * 3 2 1 32 32 H 0.96995 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47080 * 59.99730 * 10 8 7 34 34 H 1.08998 * 109.47066 * 179.97438 * 10 8 7 35 35 H 1.09002 * 109.47203 * 299.99322 * 10 8 7 36 36 H 1.09008 * 109.45939 * 60.02871 * 11 8 7 37 37 H 1.08994 * 109.49547 * 298.56610 * 12 11 8 38 38 H 1.08997 * 109.49694 * 58.66054 * 12 11 8 39 39 H 1.08997 * 109.58631 * 294.84405 * 13 12 11 40 40 H 1.09000 * 109.58379 * 174.42253 * 13 12 11 41 41 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58845 * 293.82043 * 23 14 13 43 43 H 1.09007 * 109.58211 * 173.39704 * 23 14 13 44 44 H 1.08996 * 109.49892 * 301.33454 * 24 11 8 45 45 H 1.08998 * 109.49989 * 61.40519 * 24 11 8 46 46 H 1.08000 * 120.49745 * 179.97438 * 25 4 3 47 47 H 1.08001 * 119.54842 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5865 1.1884 0.0053 5 6 4.3600 2.4520 0.0107 6 8 3.7797 3.5195 0.0110 7 7 5.7073 2.4172 0.0164 8 6 6.4722 3.6667 0.0222 9 1 5.9464 4.4173 -0.5679 10 6 6.6252 4.1642 1.4609 11 6 7.8560 3.4203 -0.5821 12 6 8.5933 2.3651 0.2455 13 6 9.9645 2.0958 -0.3825 14 7 10.6832 3.3706 -0.5132 15 6 11.9413 3.5188 0.0068 16 1 12.2865 4.4944 0.3155 17 6 12.7728 2.4150 0.1375 18 7 12.5118 1.3117 -0.5312 19 14 14.2621 2.4954 1.2621 20 1 13.8763 2.0548 2.6267 21 1 15.3276 1.6041 0.7370 22 1 14.7665 3.8910 1.3165 23 6 10.0266 4.4832 -1.2131 24 6 8.6545 4.7258 -0.5765 25 6 4.2344 -0.0508 0.0050 26 6 3.4741 -1.2040 -0.0001 27 7 2.1571 -1.1465 -0.0059 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6494 2.1377 0.0005 32 1 6.1705 1.5650 0.0165 33 1 7.1510 3.4135 2.0509 34 1 7.1947 5.0935 1.4654 35 1 5.6394 4.3397 1.8915 36 1 7.7468 3.0663 -1.6073 37 1 8.7249 2.7287 1.2645 38 1 8.0124 1.4429 0.2600 39 1 9.8336 1.6473 -1.3672 40 1 10.5326 1.4199 0.2566 41 1 13.0930 0.5404 -0.4403 42 1 9.9009 4.2294 -2.2657 43 1 10.6359 5.3825 -1.1222 44 1 8.1173 5.4834 -1.1469 45 1 8.7852 5.0680 0.4502 46 1 5.3130 -0.1054 0.0086 47 1 3.9653 -2.1658 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997799909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:52 Heat of formation + Delta-G solvation = 8.876806 kcal Electronic energy + Delta-G solvation = -26559.329132 eV Core-core repulsion = 22935.087090 eV Total energy + Delta-G solvation = -3624.242042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92170 -39.60712 -38.05006 -35.41106 -33.76783 -32.81564 -32.59090 -30.93382 -30.05651 -28.83278 -27.96022 -25.67150 -24.88227 -23.21797 -23.02771 -22.35784 -20.78822 -20.22728 -18.79280 -18.04224 -16.95198 -16.65514 -15.98450 -15.73268 -15.38834 -15.14726 -14.86189 -14.58771 -14.25288 -14.11712 -13.85216 -13.66369 -13.45547 -13.09822 -12.87034 -12.68440 -12.60384 -12.52965 -12.22602 -11.99043 -11.68946 -11.55683 -11.24482 -10.88651 -10.76432 -10.55565 -10.40441 -10.20966 -10.17661 -10.15417 -9.91691 -9.75855 -9.61042 -9.41662 -9.29855 -9.09466 -8.49968 -6.71031 -5.82468 -3.24224 0.44922 0.76117 2.71539 2.96082 3.35101 3.42498 3.43371 3.55285 3.94157 4.32873 4.39607 4.46877 4.65756 4.72346 4.94357 5.08186 5.10938 5.17347 5.25923 5.27417 5.35875 5.39870 5.48082 5.57609 5.59770 5.67590 5.70196 5.74890 5.79819 5.96051 6.07897 6.09532 6.21711 6.28762 6.29827 6.39358 6.48744 6.54866 6.67441 6.71121 6.77948 6.96291 7.31036 7.38698 7.59972 7.61181 7.76601 8.03025 8.41621 9.18227 9.81743 10.38268 11.26054 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002735 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.252465 B =10236.701198 C =11100.569840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.117 4.117 4 C -0.081 4.081 5 C 0.556 3.444 6 O -0.534 6.534 7 N -0.710 5.710 8 C 0.145 3.855 9 H 0.084 0.916 10 C -0.163 4.163 11 C -0.086 4.086 12 C -0.137 4.137 13 C 0.171 3.829 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.126 4.126 25 C -0.148 4.148 26 C 0.103 3.897 27 N -0.472 5.472 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.401 0.599 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.016 0.984 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.141 0.859 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.862 -2.187 1.346 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.092 4.092 5 C 0.341 3.659 6 O -0.412 6.412 7 N -0.362 5.362 8 C 0.042 3.958 9 H 0.102 0.898 10 C -0.221 4.221 11 C -0.105 4.105 12 C -0.176 4.176 13 C 0.045 3.955 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.019 3.981 24 C -0.165 4.165 25 C -0.169 4.169 26 C -0.054 4.054 27 N -0.183 5.183 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.238 0.762 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.159 0.841 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.599 -2.306 1.327 20.770 hybrid contribution 1.650 0.219 0.525 1.745 sum -18.949 -2.087 1.852 19.153 Atomic orbital electron populations 1.20735 0.88288 1.03726 1.03363 1.21327 0.97348 0.87834 0.95086 1.22114 0.93286 1.00081 0.98256 1.20461 0.94559 0.93722 1.00485 1.18176 0.82530 0.88290 0.76862 1.90760 1.69964 1.30725 1.49719 1.46166 1.05484 1.10885 1.73707 1.21181 0.92148 0.85108 0.97408 0.89750 1.22231 1.01608 1.02113 0.96152 1.21333 0.91795 0.97948 0.99449 1.22307 0.99248 0.96010 1.00040 1.20761 0.88176 0.88696 0.97852 1.44044 1.14625 1.09103 1.63663 1.19203 0.90007 0.94750 1.34076 0.91664 1.25029 0.97691 0.97493 0.99520 1.70033 1.39449 1.04048 1.41286 0.86295 0.82354 0.77456 0.80714 1.21476 1.21787 1.20441 1.20896 0.91325 0.92191 0.93706 1.22072 0.97727 0.95076 1.01670 1.22399 1.01791 0.92664 1.00043 1.22757 0.89089 0.98545 0.95012 1.67407 1.10336 1.29471 1.11075 0.90161 0.90241 0.90434 0.83539 0.76168 0.91855 0.90996 0.92942 0.91349 0.91919 0.94082 0.96574 0.89430 0.93663 0.96564 0.92725 0.92978 0.91672 0.84117 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.17 36.01 0.37 -0.33 16 2 C 0.12 1.20 6.78 -82.63 -0.56 0.64 16 3 C -0.12 -1.24 9.31 -39.02 -0.36 -1.61 16 4 C -0.08 -0.92 5.91 -104.64 -0.62 -1.54 16 5 C 0.56 7.43 7.76 -12.19 -0.09 7.34 16 6 O -0.53 -8.72 16.11 5.36 0.09 -8.63 16 7 N -0.71 -8.79 4.96 -54.65 -0.27 -9.06 16 8 C 0.15 1.97 2.40 -67.93 -0.16 1.81 16 9 H 0.08 1.23 7.58 -51.93 -0.39 0.83 16 10 C -0.16 -2.17 8.78 37.16 0.33 -1.84 16 11 C -0.09 -1.31 2.14 -90.58 -0.19 -1.50 16 12 C -0.14 -2.31 4.82 -26.61 -0.13 -2.44 16 13 C 0.17 3.82 5.31 -3.71 -0.02 3.80 16 14 N -0.59 -14.20 3.00 -172.32 -0.52 -14.71 16 15 C -0.25 -6.69 9.59 -15.06 -0.14 -6.84 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 18 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 19 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C 0.15 2.91 6.51 -3.71 -0.02 2.89 16 24 C -0.13 -2.03 4.97 -26.61 -0.13 -2.16 16 25 C -0.15 -1.40 9.62 -39.02 -0.38 -1.78 16 26 C 0.10 0.95 11.17 -17.59 -0.20 0.75 16 27 N -0.47 -5.06 10.25 -9.52 -0.10 -5.15 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.15 1.47 7.74 -52.49 -0.41 1.06 16 32 H 0.40 4.33 4.99 -40.82 -0.20 4.13 16 33 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 34 H 0.07 0.94 6.46 -51.93 -0.34 0.60 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 37 H 0.06 1.10 6.51 -51.93 -0.34 0.77 16 38 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.08 7.93 -51.92 -0.41 0.67 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 46 H 0.14 1.05 6.54 -52.49 -0.34 0.71 16 47 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -31.43 369.08 -9.16 -40.59 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.10 Total: 2.96 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.41 Total: -2.87 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.26 Total: -53.88 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.43 -9.16 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997799909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.464 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds