Wall clock time and date at job start Tue Mar 31 2020 11:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 119.55349 * 2 1 4 4 C 1.39800 * 119.00002 * 179.74937 * 3 2 1 5 5 C 1.48153 * 120.92009 * 180.23236 * 4 3 2 6 6 O 1.21506 * 119.99875 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99438 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99467 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46901 * 324.99972 * 8 7 5 10 10 C 1.52996 * 109.47048 * 85.00472 * 8 7 5 11 11 C 1.52999 * 109.46990 * 205.00272 * 8 7 5 12 12 C 1.53041 * 109.46107 * 300.07022 * 11 8 7 13 13 C 1.53192 * 109.31358 * 178.61256 * 12 11 8 14 14 N 1.46924 * 108.77438 * 54.63595 * 13 12 11 15 15 C 1.36936 * 120.63158 * 126.41427 * 14 13 12 16 16 H 1.07997 * 119.99857 * 207.66628 * 15 14 13 17 17 C 1.38813 * 120.00175 * 27.65745 * 15 14 13 18 18 N 1.31620 * 119.99536 * 17.37056 * 17 15 14 19 19 Si 1.86793 * 120.00133 * 197.36949 * 17 15 14 20 20 H 1.48495 * 109.47282 * 90.00401 * 19 17 15 21 21 H 1.48504 * 109.47060 * 210.00051 * 19 17 15 22 22 H 1.48500 * 109.47092 * 330.00087 * 19 17 15 23 23 C 1.46928 * 118.73607 * 306.38909 * 14 13 12 24 24 C 1.53035 * 109.45990 * 179.97438 * 11 8 7 25 25 C 1.39837 * 118.15470 * 0.25665 * 4 3 2 26 26 C 1.38127 * 119.00137 * 359.97438 * 25 4 3 27 27 N 1.31797 * 119.55133 * 180.29591 * 2 1 3 28 28 H 1.09001 * 109.47377 * 89.99557 * 1 2 3 29 29 H 1.09001 * 109.47183 * 209.99749 * 1 2 3 30 30 H 1.08995 * 109.46990 * 329.99657 * 1 2 3 31 31 H 1.08000 * 120.50064 * 0.03047 * 3 2 1 32 32 H 0.96995 * 120.00047 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47080 * 59.99730 * 10 8 7 34 34 H 1.08998 * 109.47066 * 179.97438 * 10 8 7 35 35 H 1.09002 * 109.47203 * 299.99322 * 10 8 7 36 36 H 1.09008 * 109.45939 * 60.02871 * 11 8 7 37 37 H 1.08994 * 109.49547 * 298.56610 * 12 11 8 38 38 H 1.08997 * 109.49694 * 58.66054 * 12 11 8 39 39 H 1.08997 * 109.58631 * 294.84405 * 13 12 11 40 40 H 1.09000 * 109.58379 * 174.42253 * 13 12 11 41 41 H 0.97002 * 120.00023 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58845 * 293.82043 * 23 14 13 43 43 H 1.09007 * 109.58211 * 173.39704 * 23 14 13 44 44 H 1.08996 * 109.49892 * 301.33454 * 24 11 8 45 45 H 1.08998 * 109.49989 * 61.40519 * 24 11 8 46 46 H 1.08000 * 120.49745 * 179.97438 * 25 4 3 47 47 H 1.08001 * 119.54842 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5865 1.1884 0.0053 5 6 4.3600 2.4520 0.0107 6 8 3.7797 3.5195 0.0110 7 7 5.7073 2.4172 0.0164 8 6 6.4722 3.6667 0.0222 9 1 5.9464 4.4173 -0.5679 10 6 6.6252 4.1642 1.4609 11 6 7.8560 3.4203 -0.5821 12 6 8.5933 2.3651 0.2455 13 6 9.9645 2.0958 -0.3825 14 7 10.6832 3.3706 -0.5132 15 6 11.9413 3.5188 0.0068 16 1 12.2865 4.4944 0.3155 17 6 12.7728 2.4150 0.1375 18 7 12.5118 1.3117 -0.5312 19 14 14.2621 2.4954 1.2621 20 1 13.8763 2.0548 2.6267 21 1 15.3276 1.6041 0.7370 22 1 14.7665 3.8910 1.3165 23 6 10.0266 4.4832 -1.2131 24 6 8.6545 4.7258 -0.5765 25 6 4.2344 -0.0508 0.0050 26 6 3.4741 -1.2040 -0.0001 27 7 2.1571 -1.1465 -0.0059 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6494 2.1377 0.0005 32 1 6.1705 1.5650 0.0165 33 1 7.1510 3.4135 2.0509 34 1 7.1947 5.0935 1.4654 35 1 5.6394 4.3397 1.8915 36 1 7.7468 3.0663 -1.6073 37 1 8.7249 2.7287 1.2645 38 1 8.0124 1.4429 0.2600 39 1 9.8336 1.6473 -1.3672 40 1 10.5326 1.4199 0.2566 41 1 13.0930 0.5404 -0.4403 42 1 9.9009 4.2294 -2.2657 43 1 10.6359 5.3825 -1.1222 44 1 8.1173 5.4834 -1.1469 45 1 8.7852 5.0680 0.4502 46 1 5.3130 -0.1054 0.0086 47 1 3.9653 -2.1658 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997799909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:51 Heat of formation + Delta-G solvation = -9.865476 kcal Electronic energy + Delta-G solvation = -26560.141858 eV Core-core repulsion = 22935.087090 eV Total energy + Delta-G solvation = -3625.054768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.79885 -40.62035 -39.39798 -36.86426 -34.84747 -34.06099 -33.43325 -32.44633 -31.60734 -30.23536 -28.59156 -27.18289 -26.06186 -24.55273 -23.97373 -23.73777 -22.20623 -21.29256 -20.22169 -19.01487 -18.54840 -17.74759 -16.91492 -16.69911 -16.65483 -16.33444 -16.08223 -15.70785 -15.48711 -15.28252 -15.27636 -14.94231 -14.65839 -14.28233 -14.11944 -14.08546 -13.63602 -13.31764 -13.15416 -13.09970 -12.95237 -12.89919 -12.70251 -12.56445 -12.45758 -12.17752 -11.92539 -11.73620 -11.55529 -11.40963 -11.13243 -11.00758 -10.97483 -10.54471 -10.50744 -10.18048 -9.99583 -8.65528 -7.85845 -5.29897 -0.37858 0.04081 1.47328 1.48911 1.57109 1.76721 1.96222 2.52431 2.77115 3.28070 3.31545 3.43537 3.69070 3.71158 3.81118 3.88523 3.92060 3.99986 4.04857 4.37209 4.39771 4.43351 4.52968 4.59725 4.63152 4.70606 4.73001 4.76809 4.78347 4.92535 4.94862 4.95273 5.00671 5.05106 5.15688 5.17071 5.24306 5.27789 5.31580 5.42776 5.45166 5.59109 5.61499 5.69112 5.83146 6.38485 6.41801 6.88782 7.02360 7.17912 7.89958 8.40462 9.20105 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002735 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.252465 B =10236.701198 C =11100.569840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.116 3.884 3 C -0.126 4.126 4 C -0.097 4.097 5 C 0.558 3.442 6 O -0.568 6.568 7 N -0.704 5.704 8 C 0.156 3.844 9 H 0.081 0.919 10 C -0.158 4.158 11 C -0.076 4.076 12 C -0.122 4.122 13 C 0.176 3.824 14 N -0.610 5.610 15 C -0.259 4.259 16 H 0.064 0.936 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.140 3.860 24 C -0.116 4.116 25 C -0.145 4.145 26 C 0.100 3.900 27 N -0.490 5.490 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.410 0.590 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.070 0.930 39 H -0.005 1.005 40 H 0.053 0.947 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.161 0.839 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.032 -2.221 1.947 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.021 4.021 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.345 3.655 6 O -0.448 6.448 7 N -0.356 5.356 8 C 0.052 3.948 9 H 0.099 0.901 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.161 4.161 13 C 0.050 3.950 14 N -0.334 5.334 15 C -0.389 4.389 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.580 5.580 19 Si 0.792 3.208 20 H -0.212 1.212 21 H -0.223 1.223 22 H -0.196 1.196 23 C 0.015 3.985 24 C -0.155 4.155 25 C -0.165 4.165 26 C -0.057 4.057 27 N -0.201 5.201 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.165 0.835 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.178 0.822 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.782 -2.332 1.928 21.991 hybrid contribution 2.007 0.229 0.278 2.039 sum -19.776 -2.103 2.206 20.009 Atomic orbital electron populations 1.20821 0.86334 1.04573 1.04255 1.21747 0.98733 0.87333 0.94326 1.22220 0.93260 1.00537 0.98685 1.20417 0.94837 0.93481 1.02099 1.18434 0.82583 0.88547 0.75938 1.90740 1.70561 1.32077 1.51382 1.46062 1.05320 1.10901 1.73306 1.20959 0.90893 0.85563 0.97408 0.90115 1.22184 1.01460 1.02283 0.95696 1.21190 0.92340 0.96822 0.99121 1.22091 0.96531 0.98057 0.99406 1.20601 0.90401 0.87607 0.96361 1.44331 1.14392 1.10395 1.64273 1.19502 0.91154 0.94709 1.33565 0.91788 1.25728 1.00436 0.97394 1.01027 1.70177 1.40505 1.04525 1.42809 0.85328 0.79191 0.77498 0.78815 1.21189 1.22337 1.19565 1.21050 0.93222 0.90819 0.93443 1.21941 0.95578 0.96297 1.01705 1.22602 1.02813 0.91920 0.99208 1.23252 0.88820 0.99652 0.93928 1.67489 1.11155 1.29841 1.11573 0.89141 0.89921 0.89062 0.83516 0.75152 0.91932 0.90571 0.93252 0.91510 0.92212 0.91202 0.98712 0.92822 0.94170 0.97096 0.92934 0.90308 0.91569 0.82171 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 16 2 C 0.12 2.14 6.78 42.55 0.29 2.42 16 3 C -0.13 -2.57 9.31 22.63 0.21 -2.36 16 4 C -0.10 -2.09 5.91 -19.88 -0.12 -2.20 16 5 C 0.56 14.17 7.76 86.88 0.67 14.84 16 6 O -0.57 -18.05 16.11 -3.74 -0.06 -18.11 16 7 N -0.70 -15.99 4.96 -445.12 -2.21 -18.19 16 8 C 0.16 3.90 2.40 44.99 0.11 4.00 16 9 H 0.08 2.17 7.58 -2.39 -0.02 2.15 16 10 C -0.16 -3.88 8.78 71.98 0.63 -3.25 16 11 C -0.08 -2.14 2.14 -10.77 -0.02 -2.17 16 12 C -0.12 -3.94 4.82 30.67 0.15 -3.79 16 13 C 0.18 7.92 5.31 86.36 0.46 8.38 16 14 N -0.61 -29.42 3.00 -699.09 -2.09 -31.51 16 15 C -0.26 -13.91 9.59 84.03 0.81 -13.11 16 16 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 17 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 18 N -0.93 -53.97 11.19 21.65 0.24 -53.73 16 19 Si 0.96 44.13 29.59 68.60 2.03 46.16 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C 0.14 5.53 6.51 86.36 0.56 6.09 16 24 C -0.12 -3.51 4.97 30.67 0.15 -3.36 16 25 C -0.15 -2.44 9.62 22.63 0.22 -2.22 16 26 C 0.10 1.63 11.17 84.67 0.95 2.58 16 27 N -0.49 -9.65 10.25 -184.04 -1.89 -11.54 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.15 2.88 7.74 -2.91 -0.02 2.86 16 32 H 0.41 7.79 4.99 -92.71 -0.46 7.33 16 33 H 0.06 1.54 6.46 -2.39 -0.02 1.53 16 34 H 0.08 1.80 6.46 -2.39 -0.02 1.79 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.06 2.00 6.51 -2.39 -0.02 1.99 16 38 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 39 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.05 2.78 6.04 -2.39 -0.01 2.76 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.05 2.05 7.93 -2.38 -0.02 2.04 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.03 6.51 -2.39 -0.02 2.01 16 46 H 0.16 1.94 6.54 -2.91 -0.02 1.92 16 47 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -68.45 369.08 2.75 -65.71 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.52 Total: 18.20 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.20 Total: 3.02 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -5.94 Total: -114.97 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.06 Total: -18.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.45 2.75 -65.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997799909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.842 kcal (2) G-P(sol) polarization free energy of solvation -68.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds