Wall clock time and date at job start Tue Mar 31 2020 11:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47163 * 180.27320 * 3 2 1 5 5 H 1.48500 * 109.46761 * 300.27103 * 3 2 1 6 6 H 1.48496 * 109.47285 * 60.27012 * 3 2 1 7 7 C 1.38808 * 120.00382 * 180.27015 * 2 1 3 8 8 H 1.07994 * 120.00507 * 179.72623 * 7 2 1 9 9 N 1.36943 * 119.99910 * 359.72770 * 7 2 1 10 10 C 1.46496 * 120.00450 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49477 * 34.93367 * 10 9 7 12 12 C 1.53038 * 109.50115 * 155.00095 * 10 9 7 13 13 C 1.53041 * 109.53832 * 181.31809 * 12 10 9 14 14 C 1.53195 * 109.31192 * 298.63220 * 13 12 10 15 15 N 1.46921 * 108.77174 * 54.63646 * 14 13 12 16 16 C 1.34783 * 120.63128 * 126.41497 * 15 14 13 17 17 O 1.21631 * 119.99432 * 354.61772 * 16 15 14 18 18 C 1.47250 * 120.00406 * 174.61871 * 16 15 14 19 19 C 1.46696 * 126.94481 * 321.00123 * 18 16 15 20 20 C 1.34484 * 106.33298 * 179.97438 * 19 18 16 21 21 N 1.36447 * 108.85898 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.85274 * 180.02562 * 21 20 19 23 23 C 1.34653 * 110.29538 * 359.74572 * 21 20 19 24 24 C 1.50699 * 125.80157 * 180.29660 * 23 21 20 25 25 C 1.53786 * 113.61556 * 39.26744 * 24 23 21 26 26 C 1.53949 * 87.02324 * 220.04785 * 25 24 23 27 27 C 1.53785 * 87.11246 * 25.36425 * 26 25 24 28 28 C 1.46925 * 118.74338 * 306.38788 * 15 14 13 29 29 H 0.97000 * 119.99945 * 359.72904 * 1 2 3 30 30 H 0.97001 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.45649 * 301.34067 * 12 10 9 32 32 H 1.09000 * 109.46014 * 61.30965 * 12 10 9 33 33 H 1.08996 * 109.49881 * 58.58344 * 13 12 10 34 34 H 1.08998 * 109.49589 * 178.68680 * 13 12 10 35 35 H 1.08999 * 109.58352 * 174.42315 * 14 13 12 36 36 H 1.09003 * 109.58451 * 294.84888 * 14 13 12 37 37 H 1.08003 * 126.82773 * 0.02562 * 19 18 16 38 38 H 1.07996 * 125.56672 * 179.97438 * 20 19 18 39 39 H 1.09002 * 112.85424 * 170.46705 * 24 23 21 40 40 H 1.09004 * 113.61199 * 334.57530 * 25 24 23 41 41 H 1.09008 * 113.61085 * 105.46843 * 25 24 23 42 42 H 1.09002 * 113.54178 * 270.81157 * 26 25 24 43 43 H 1.09001 * 113.74102 * 139.93846 * 26 25 24 44 44 H 1.08997 * 113.61271 * 220.09208 * 27 26 25 45 45 H 1.09001 * 113.61525 * 89.18189 * 27 26 25 46 46 H 1.09005 * 109.58533 * 293.82607 * 28 15 14 47 47 H 1.09001 * 109.58617 * 173.39926 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8964 2.3936 1.2157 7 6 2.0103 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0101 9 7 1.3257 -2.3881 -0.0056 10 6 2.0581 -3.6567 -0.0122 11 1 2.9721 -3.5521 0.5724 12 6 1.1840 -4.7544 0.5986 13 6 1.9604 -6.0731 0.6223 14 6 2.3139 -6.4787 -0.8121 15 7 3.0300 -5.3683 -1.4546 16 6 4.2301 -5.5690 -2.0342 17 8 4.7753 -6.6525 -1.9442 18 6 4.8813 -4.4765 -2.7764 19 6 4.2312 -3.4957 -3.6524 20 6 5.2078 -2.6934 -4.1121 21 7 6.3991 -3.1045 -3.5892 22 1 7.2564 -2.6876 -3.7682 23 6 6.2138 -4.1680 -2.7843 24 6 7.2916 -4.8960 -2.0232 25 6 8.3590 -3.9649 -1.4244 26 6 9.3983 -5.0232 -1.8367 27 6 8.4022 -5.4661 -2.9214 28 6 2.4128 -4.0349 -1.4537 29 1 -0.4850 0.8400 0.0040 30 1 0.3557 -2.3881 -0.0020 31 1 0.9098 -4.4761 1.6161 32 1 0.2815 -4.8754 -0.0005 33 1 2.8756 -5.9461 1.2005 34 1 1.3457 -6.8490 1.0787 35 1 2.9507 -7.3631 -0.7952 36 1 1.4005 -6.6940 -1.3666 37 1 3.1779 -3.4304 -3.8817 38 1 5.0713 -1.8604 -4.7858 39 1 6.8927 -5.6180 -1.3106 40 1 8.4628 -3.0198 -1.9576 41 1 8.2703 -3.8358 -0.3456 42 1 9.5763 -5.7795 -1.0722 43 1 10.3200 -4.6006 -2.2368 44 1 8.3482 -6.5472 -3.0494 45 1 8.5178 -4.9323 -3.8646 46 1 1.5074 -4.0510 -2.0606 47 1 3.1149 -3.3070 -1.8603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000186590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:10 Heat of formation + Delta-G solvation = 38.783904 kcal Electronic energy + Delta-G solvation = -27551.873118 eV Core-core repulsion = 23928.927945 eV Total energy + Delta-G solvation = -3622.945173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37760 -39.33294 -38.26199 -37.01988 -34.17186 -32.51702 -31.40472 -30.43395 -29.70262 -28.10085 -25.78585 -25.67448 -24.61622 -23.94551 -22.40765 -21.23992 -20.78095 -19.85545 -19.48190 -18.13575 -17.71252 -17.05425 -16.11800 -15.65879 -15.28360 -15.01179 -14.55599 -14.48544 -14.16674 -13.95807 -13.73805 -13.40575 -13.31846 -12.93218 -12.69400 -12.65704 -12.41587 -12.38584 -12.26223 -12.20345 -11.97992 -11.25359 -10.99278 -10.87042 -10.83693 -10.60256 -10.54749 -10.43167 -10.42441 -10.19154 -9.88112 -9.66715 -9.48190 -9.04624 -8.52071 -8.20070 -7.96170 -6.97385 -5.79205 -3.08269 2.03643 2.64793 3.17922 3.40133 3.45939 3.48358 3.49623 3.73666 4.42183 4.51096 4.53474 4.56651 4.82282 5.02302 5.07868 5.20513 5.30864 5.34676 5.43696 5.46559 5.50941 5.51362 5.57745 5.68136 5.71592 5.72055 5.84771 5.86687 5.88594 5.91728 6.03564 6.07769 6.17858 6.23441 6.26586 6.32889 6.41312 6.44703 6.51236 6.83623 6.91100 6.96260 7.06017 7.15352 7.55868 7.69776 7.91899 8.39104 8.66002 9.50842 10.06759 10.42344 11.43343 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004804 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.141168 B = 5827.197594 C = 7416.408975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.113 3.887 15 N -0.601 5.601 16 C 0.593 3.407 17 O -0.564 6.564 18 C -0.218 4.218 19 C -0.158 4.158 20 C -0.016 4.016 21 N -0.552 5.552 22 H 0.411 0.589 23 C 0.102 3.898 24 C -0.044 4.044 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.130 4.130 28 C 0.083 3.917 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.147 0.853 38 H 0.168 0.832 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.347 -10.088 -6.050 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.165 4.165 13 C -0.167 4.167 14 C -0.010 4.010 15 N -0.333 5.333 16 C 0.383 3.617 17 O -0.445 6.445 18 C -0.228 4.228 19 C -0.182 4.182 20 C -0.143 4.143 21 N -0.147 5.147 22 H 0.247 0.753 23 C -0.015 4.015 24 C -0.063 4.063 25 C -0.177 4.177 26 C -0.178 4.178 27 C -0.168 4.168 28 C -0.042 4.042 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.186 0.814 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.818 -10.410 -6.034 18.322 hybrid contribution 0.198 1.466 -0.189 1.491 sum 14.016 -8.944 -6.223 17.753 Atomic orbital electron populations 1.69667 1.05069 1.25530 1.57730 1.24711 0.95445 0.97563 1.02959 0.86169 0.78819 0.84332 0.77197 1.20625 1.21874 1.21902 1.19275 0.90983 0.83983 1.42551 0.91173 1.42390 1.05808 0.99588 1.88187 1.20497 0.94866 0.86354 0.92608 0.93289 1.21828 0.98699 0.94328 1.01602 1.21867 1.00652 0.97885 0.96301 1.21532 0.96363 0.90133 0.92935 1.48059 1.19224 1.10834 1.55159 1.17474 0.80122 0.86528 0.77609 1.90691 1.64472 1.26469 1.62868 1.20068 0.92554 1.02111 1.08065 1.22079 0.98830 0.96091 1.01188 1.21693 0.84160 1.03198 1.05226 1.41383 1.09567 1.25730 1.37993 0.75316 1.19819 0.94330 0.91005 0.96329 1.21281 0.90489 0.97258 0.97291 1.23051 0.95716 0.97216 1.01722 1.22861 0.97052 0.98911 0.98970 1.22937 0.94978 1.01743 0.97135 1.23065 0.98215 0.81834 1.01079 0.93556 0.78101 0.91630 0.92132 0.91773 0.91260 0.89535 0.91982 0.83546 0.81430 0.86300 0.90642 0.90677 0.89781 0.91375 0.90662 0.90599 0.92309 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.45 5.12 -53.31 -0.27 -17.72 16 10 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.13 -2.09 5.35 -26.69 -0.14 -2.24 16 13 C -0.13 -1.80 6.08 -26.61 -0.16 -1.97 16 14 C 0.11 1.67 6.44 -3.71 -0.02 1.65 16 15 N -0.60 -10.18 2.97 -174.09 -0.52 -10.69 16 16 C 0.59 10.64 7.35 -12.60 -0.09 10.54 16 17 O -0.56 -11.02 15.32 5.25 0.08 -10.94 16 18 C -0.22 -3.59 5.34 -103.35 -0.55 -4.14 16 19 C -0.16 -2.39 8.68 -37.49 -0.33 -2.71 16 20 C -0.02 -0.19 11.89 -16.83 -0.20 -0.39 16 21 N -0.55 -6.33 5.72 -9.11 -0.05 -6.39 16 22 H 0.41 3.39 8.31 -40.82 -0.34 3.05 16 23 C 0.10 1.43 6.21 -81.89 -0.51 0.92 16 24 C -0.04 -0.54 3.90 -90.95 -0.35 -0.90 16 25 C -0.14 -1.38 7.63 -25.83 -0.20 -1.58 16 26 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 27 C -0.13 -1.29 7.63 -25.91 -0.20 -1.49 16 28 C 0.08 1.52 5.12 -3.71 -0.02 1.50 16 29 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.39 9.92 7.80 -40.82 -0.32 9.60 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.15 2.19 7.42 -52.48 -0.39 1.80 16 38 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 1.71 6.98 -51.93 -0.36 1.35 16 40 H 0.07 0.67 7.30 -51.93 -0.38 0.29 16 41 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.10 1.90 4.70 -51.93 -0.24 1.66 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -31.89 372.42 -10.31 -42.20 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.43 Total: 13.71 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.43 Total: -5.99 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.12 Total: -61.52 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.89 -10.31 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000186590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.987 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds