Wall clock time and date at job start Tue Mar 31 2020 11:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47163 * 180.27320 * 3 2 1 5 5 H 1.48500 * 109.46761 * 300.27103 * 3 2 1 6 6 H 1.48496 * 109.47285 * 60.27012 * 3 2 1 7 7 C 1.38808 * 120.00382 * 180.27015 * 2 1 3 8 8 H 1.07994 * 120.00507 * 179.72623 * 7 2 1 9 9 N 1.36943 * 119.99910 * 359.72770 * 7 2 1 10 10 C 1.46496 * 120.00450 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49477 * 34.93367 * 10 9 7 12 12 C 1.53038 * 109.50115 * 155.00095 * 10 9 7 13 13 C 1.53041 * 109.53832 * 181.31809 * 12 10 9 14 14 C 1.53195 * 109.31192 * 298.63220 * 13 12 10 15 15 N 1.46921 * 108.77174 * 54.63646 * 14 13 12 16 16 C 1.34783 * 120.63128 * 126.41497 * 15 14 13 17 17 O 1.21631 * 119.99432 * 354.61772 * 16 15 14 18 18 C 1.47250 * 120.00406 * 174.61871 * 16 15 14 19 19 C 1.46696 * 126.94481 * 321.00123 * 18 16 15 20 20 C 1.34484 * 106.33298 * 179.97438 * 19 18 16 21 21 N 1.36447 * 108.85898 * 0.02562 * 20 19 18 22 22 H 0.96999 * 124.85274 * 180.02562 * 21 20 19 23 23 C 1.34653 * 110.29538 * 359.74572 * 21 20 19 24 24 C 1.50699 * 125.80157 * 180.29660 * 23 21 20 25 25 C 1.53786 * 113.61556 * 39.26744 * 24 23 21 26 26 C 1.53949 * 87.02324 * 220.04785 * 25 24 23 27 27 C 1.53785 * 87.11246 * 25.36425 * 26 25 24 28 28 C 1.46925 * 118.74338 * 306.38788 * 15 14 13 29 29 H 0.97000 * 119.99945 * 359.72904 * 1 2 3 30 30 H 0.97001 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.45649 * 301.34067 * 12 10 9 32 32 H 1.09000 * 109.46014 * 61.30965 * 12 10 9 33 33 H 1.08996 * 109.49881 * 58.58344 * 13 12 10 34 34 H 1.08998 * 109.49589 * 178.68680 * 13 12 10 35 35 H 1.08999 * 109.58352 * 174.42315 * 14 13 12 36 36 H 1.09003 * 109.58451 * 294.84888 * 14 13 12 37 37 H 1.08003 * 126.82773 * 0.02562 * 19 18 16 38 38 H 1.07996 * 125.56672 * 179.97438 * 20 19 18 39 39 H 1.09002 * 112.85424 * 170.46705 * 24 23 21 40 40 H 1.09004 * 113.61199 * 334.57530 * 25 24 23 41 41 H 1.09008 * 113.61085 * 105.46843 * 25 24 23 42 42 H 1.09002 * 113.54178 * 270.81157 * 26 25 24 43 43 H 1.09001 * 113.74102 * 139.93846 * 26 25 24 44 44 H 1.08997 * 113.61271 * 220.09208 * 27 26 25 45 45 H 1.09001 * 113.61525 * 89.18189 * 27 26 25 46 46 H 1.09005 * 109.58533 * 293.82607 * 28 15 14 47 47 H 1.09001 * 109.58617 * 173.39926 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8964 2.3936 1.2157 7 6 2.0103 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0101 9 7 1.3257 -2.3881 -0.0056 10 6 2.0581 -3.6567 -0.0122 11 1 2.9721 -3.5521 0.5724 12 6 1.1840 -4.7544 0.5986 13 6 1.9604 -6.0731 0.6223 14 6 2.3139 -6.4787 -0.8121 15 7 3.0300 -5.3683 -1.4546 16 6 4.2301 -5.5690 -2.0342 17 8 4.7753 -6.6525 -1.9442 18 6 4.8813 -4.4765 -2.7764 19 6 4.2312 -3.4957 -3.6524 20 6 5.2078 -2.6934 -4.1121 21 7 6.3991 -3.1045 -3.5892 22 1 7.2564 -2.6876 -3.7682 23 6 6.2138 -4.1680 -2.7843 24 6 7.2916 -4.8960 -2.0232 25 6 8.3590 -3.9649 -1.4244 26 6 9.3983 -5.0232 -1.8367 27 6 8.4022 -5.4661 -2.9214 28 6 2.4128 -4.0349 -1.4537 29 1 -0.4850 0.8400 0.0040 30 1 0.3557 -2.3881 -0.0020 31 1 0.9098 -4.4761 1.6161 32 1 0.2815 -4.8754 -0.0005 33 1 2.8756 -5.9461 1.2005 34 1 1.3457 -6.8490 1.0787 35 1 2.9507 -7.3631 -0.7952 36 1 1.4005 -6.6940 -1.3666 37 1 3.1779 -3.4304 -3.8817 38 1 5.0713 -1.8604 -4.7858 39 1 6.8927 -5.6180 -1.3106 40 1 8.4628 -3.0198 -1.9576 41 1 8.2703 -3.8358 -0.3456 42 1 9.5763 -5.7795 -1.0722 43 1 10.3200 -4.6006 -2.2368 44 1 8.3482 -6.5472 -3.0494 45 1 8.5178 -4.9323 -3.8646 46 1 1.5074 -4.0510 -2.0606 47 1 3.1149 -3.3070 -1.8603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000186590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:09 Heat of formation + Delta-G solvation = 19.983383 kcal Electronic energy + Delta-G solvation = -27552.688369 eV Core-core repulsion = 23928.927945 eV Total energy + Delta-G solvation = -3623.760424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44359 -40.67803 -39.11675 -38.51729 -35.96795 -33.93736 -33.14007 -31.65773 -30.71075 -29.82482 -26.87851 -26.56818 -25.90706 -25.64620 -23.75031 -22.63487 -21.84563 -21.27201 -20.37497 -19.42069 -19.02432 -18.76298 -17.45293 -16.73683 -16.68638 -16.37107 -16.04944 -15.55374 -15.42478 -15.39415 -15.20942 -14.98625 -14.69480 -14.17661 -13.93997 -13.82936 -13.55057 -13.45964 -13.40579 -13.25403 -13.09754 -12.97831 -12.88302 -12.48763 -12.13282 -11.97006 -11.90146 -11.67815 -11.56517 -11.41562 -11.38197 -11.26020 -11.09274 -10.80731 -9.73932 -9.58933 -9.07248 -8.92440 -7.92079 -5.21029 0.86892 1.48133 1.48927 1.54622 1.58502 2.00356 2.33800 2.46766 2.58741 3.41787 3.59671 3.63256 3.70870 3.75720 3.96733 3.98599 4.02850 4.09204 4.18968 4.26070 4.33666 4.42639 4.43008 4.54893 4.64680 4.69433 4.72825 4.76960 4.79640 4.94966 4.95646 4.99208 5.02729 5.03899 5.06158 5.09987 5.11061 5.27367 5.39652 5.46266 5.48397 5.52825 5.67816 5.81851 6.03482 6.28903 6.51258 6.68439 7.28530 7.36735 8.08397 8.34862 9.31176 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.004804 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.141168 B = 5827.197594 C = 7416.408975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.116 4.116 14 C 0.108 3.892 15 N -0.601 5.601 16 C 0.587 3.413 17 O -0.588 6.588 18 C -0.261 4.261 19 C -0.188 4.188 20 C 0.000 4.000 21 N -0.535 5.535 22 H 0.429 0.571 23 C 0.106 3.894 24 C -0.058 4.058 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.125 4.125 28 C 0.101 3.899 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.202 0.798 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.057 0.943 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -9.763 -6.729 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.157 4.157 13 C -0.155 4.155 14 C -0.013 4.013 15 N -0.333 5.333 16 C 0.378 3.622 17 O -0.471 6.471 18 C -0.271 4.271 19 C -0.212 4.212 20 C -0.128 4.128 21 N -0.131 5.131 22 H 0.269 0.731 23 C -0.012 4.012 24 C -0.078 4.078 25 C -0.173 4.173 26 C -0.164 4.164 27 C -0.162 4.162 28 C -0.024 4.024 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.156 0.844 38 H 0.219 0.781 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.777 -10.112 -6.717 19.907 hybrid contribution -0.373 1.288 0.019 1.342 sum 15.404 -8.823 -6.698 18.974 Atomic orbital electron populations 1.69807 1.06445 1.25904 1.59531 1.25428 0.96224 1.00612 1.03702 0.85189 0.78224 0.80373 0.76688 1.19367 1.21823 1.22312 1.19521 0.91046 0.85080 1.40927 0.91322 1.42503 1.05464 1.00492 1.88320 1.20618 0.94346 0.85834 0.93493 0.95166 1.21741 0.98567 0.94359 1.01035 1.21803 1.00467 0.97290 0.95932 1.21719 0.96776 0.89415 0.93436 1.48071 1.19228 1.10707 1.55262 1.17802 0.80118 0.86748 0.77493 1.90658 1.64968 1.27455 1.63970 1.20210 0.94016 1.03042 1.09786 1.22133 0.99268 0.97227 1.02556 1.22156 0.83605 1.02816 1.04239 1.41357 1.10338 1.24714 1.36717 0.73084 1.20053 0.93933 0.91222 0.96021 1.21334 0.90943 0.97749 0.97745 1.23079 0.94964 0.97840 1.01389 1.22811 0.97247 0.98193 0.98194 1.22943 0.94142 1.01333 0.97815 1.22643 0.97795 0.82471 0.99474 0.94028 0.79121 0.92056 0.91468 0.92555 0.87875 0.89571 0.90366 0.84372 0.78077 0.89189 0.89098 0.91350 0.89680 0.89096 0.91498 0.89195 0.92513 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.23 -12.70 9.93 84.03 0.83 -11.86 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -35.87 5.12 -322.58 -1.65 -37.52 16 10 C 0.17 6.70 2.92 45.07 0.13 6.83 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.12 -3.87 5.35 30.62 0.16 -3.71 16 13 C -0.12 -3.13 6.08 30.67 0.19 -2.94 16 14 C 0.11 3.13 6.44 86.36 0.56 3.69 16 15 N -0.60 -20.64 2.97 -822.95 -2.45 -23.09 16 16 C 0.59 21.64 7.35 86.61 0.64 22.27 16 17 O -0.59 -23.63 15.32 -4.13 -0.06 -23.70 16 18 C -0.26 -8.70 5.34 -19.04 -0.10 -8.80 16 19 C -0.19 -5.68 8.68 23.62 0.20 -5.48 16 20 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 21 N -0.53 -11.15 5.72 -182.73 -1.04 -12.20 16 22 H 0.43 5.68 8.31 -92.71 -0.77 4.91 16 23 C 0.11 2.91 6.21 41.78 0.26 3.17 16 24 C -0.06 -1.41 3.90 -11.01 -0.04 -1.45 16 25 C -0.14 -2.44 7.63 31.18 0.24 -2.20 16 26 C -0.13 -1.85 8.09 31.18 0.25 -1.60 16 27 C -0.12 -2.27 7.63 31.12 0.24 -2.04 16 28 C 0.10 3.77 5.12 86.36 0.44 4.21 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.38 19.75 7.80 -92.71 -0.72 19.03 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.54 6.99 -2.39 -0.02 2.52 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.14 4.26 7.42 -2.91 -0.02 4.24 16 38 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.09 2.70 6.98 -2.39 -0.02 2.69 16 40 H 0.09 1.35 7.30 -2.38 -0.02 1.33 16 41 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 46 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.09 3.46 4.70 -2.39 -0.01 3.45 16 Total: -1.00 -70.01 372.42 2.05 -67.96 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.51 Total: 40.93 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.45 Total: -2.20 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -4.86 Total: -130.13 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.70 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.01 2.05 -67.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000186590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.942 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds