Wall clock time and date at job start Tue Mar 31 2020 11:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31693 * 119.71205 * 2 1 4 4 C 1.31930 * 121.87641 * 180.31271 * 3 2 1 5 5 C 1.50695 * 119.46269 * 179.67778 * 4 3 2 6 6 C 1.53004 * 109.47535 * 94.97499 * 5 4 3 7 7 C 1.53000 * 109.47202 * 214.97747 * 5 4 3 8 8 C 1.38354 * 121.08065 * 359.65312 * 4 3 2 9 9 C 1.38360 * 119.29763 * 0.02562 * 8 4 3 10 10 C 1.39512 * 119.71660 * 179.68205 * 2 1 3 11 11 C 1.47840 * 120.56228 * 359.97438 * 10 2 1 12 12 O 1.21551 * 119.99717 * 353.03753 * 11 10 2 13 13 N 1.34780 * 120.00057 * 173.02664 * 11 10 2 14 14 C 1.46503 * 119.99992 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.63724 * 31.86512 * 14 13 11 16 16 C 1.55155 * 110.72037 * 155.00162 * 14 13 11 17 17 C 1.54908 * 101.58042 * 153.86714 * 16 14 13 18 18 N 1.47427 * 104.83307 * 322.99093 * 17 16 14 19 19 C 1.36930 * 125.65048 * 204.10549 * 18 17 16 20 20 H 1.08000 * 120.00371 * 167.90836 * 19 18 17 21 21 C 1.38817 * 119.99977 * 347.90615 * 19 18 17 22 22 N 1.31614 * 119.99894 * 350.75107 * 21 19 18 23 23 Si 1.86798 * 120.00069 * 170.75208 * 21 19 18 24 24 H 1.48497 * 109.47344 * 94.97065 * 23 21 19 25 25 H 1.48501 * 109.47104 * 214.97227 * 23 21 19 26 26 H 1.48508 * 109.47019 * 334.97094 * 23 21 19 27 27 C 1.47024 * 108.70194 * 24.13162 * 18 17 16 28 28 H 1.09000 * 109.47867 * 263.50407 * 1 2 3 29 29 H 1.09002 * 109.47672 * 23.51022 * 1 2 3 30 30 H 1.09001 * 109.46937 * 143.50270 * 1 2 3 31 31 H 1.09003 * 109.47013 * 334.97884 * 5 4 3 32 32 H 1.08999 * 109.47019 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46777 * 300.00355 * 6 5 4 34 34 H 1.08994 * 109.46480 * 59.99988 * 6 5 4 35 35 H 1.09006 * 109.46916 * 60.00060 * 7 5 4 36 36 H 1.08999 * 109.47142 * 179.97438 * 7 5 4 37 37 H 1.08991 * 109.46938 * 299.99795 * 7 5 4 38 38 H 1.07991 * 120.35411 * 180.02562 * 8 4 3 39 39 H 1.08000 * 120.85328 * 179.97438 * 9 8 4 40 40 H 0.96994 * 119.99574 * 0.02562 * 13 11 10 41 41 H 1.08991 * 111.00488 * 271.94380 * 16 14 13 42 42 H 1.09003 * 111.00203 * 35.79854 * 16 14 13 43 43 H 1.08995 * 110.36870 * 81.82996 * 17 16 14 44 44 H 1.09000 * 110.36569 * 204.15384 * 17 16 14 45 45 H 0.97004 * 119.99830 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.88446 * 239.52165 * 27 18 17 47 47 H 1.08999 * 109.88295 * 118.35404 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 -0.0061 5 6 4.1692 2.5327 -0.0131 6 6 4.5208 2.9329 1.4212 7 6 5.4496 2.4415 -0.8456 8 6 4.2366 0.0365 -0.0057 9 6 3.5987 -1.1912 0.0008 10 6 2.1986 -1.2116 0.0067 11 6 1.4656 -2.4955 0.0144 12 8 0.2569 -2.5045 0.1425 13 7 2.1376 -3.6560 -0.1209 14 6 1.4112 -4.9282 -0.1138 15 1 0.4172 -4.8054 -0.5438 16 6 2.2081 -6.0196 -0.8762 17 6 1.6883 -7.3131 -0.2007 18 7 1.5145 -6.9541 1.2186 19 6 1.5274 -7.8304 2.2708 20 1 1.5874 -7.4582 3.2828 21 6 1.4634 -9.1972 2.0366 22 7 1.2080 -9.6461 0.8261 23 14 1.7397 -10.3991 3.4396 24 1 0.4303 -10.7948 4.0175 25 1 2.4396 -11.6047 2.9279 26 1 2.5689 -9.7532 4.4887 27 6 1.3245 -5.4996 1.3171 28 1 -0.3635 -0.1163 1.0210 29 1 -0.3634 0.9423 -0.4099 30 1 -0.3633 -0.8261 -0.6113 31 1 3.5063 3.2814 -0.4470 32 1 5.0202 3.9017 1.4160 33 1 3.6085 2.9979 2.0142 34 1 5.1836 2.1842 1.8550 35 1 5.1991 2.1565 -1.8675 36 1 5.9493 3.4102 -0.8511 37 1 6.1124 1.6929 -0.4117 38 1 5.3151 0.0910 -0.0103 39 1 4.1660 -2.1102 0.0009 40 1 3.1022 -3.6487 -0.2229 41 1 1.9662 -6.0093 -1.9388 42 1 3.2804 -5.9011 -0.7200 43 1 0.7346 -7.6114 -0.6360 44 1 2.4199 -8.1146 -0.3025 45 1 1.1636 -10.6012 0.6624 46 1 2.1078 -5.0646 1.9380 47 1 0.3459 -5.2817 1.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015716786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:44 Heat of formation + Delta-G solvation = 15.465157 kcal Electronic energy + Delta-G solvation = -26239.504340 eV Core-core repulsion = 22615.547990 eV Total energy + Delta-G solvation = -3623.956349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03740 -39.34938 -37.32271 -35.94800 -34.36456 -33.06309 -31.87468 -31.51739 -29.23057 -28.11780 -27.46859 -26.87359 -25.04944 -24.26083 -22.67217 -21.43794 -20.58699 -20.24373 -19.83409 -17.86165 -17.12712 -16.77504 -15.94260 -15.88625 -15.20123 -14.91338 -14.75191 -14.64517 -14.25046 -13.96565 -13.89012 -13.41150 -13.35333 -13.14070 -12.97085 -12.54668 -12.44580 -12.28421 -12.08991 -11.98377 -11.70654 -11.60915 -11.52955 -11.31842 -11.12596 -10.88365 -10.82729 -10.53126 -10.11570 -10.06212 -9.98629 -9.88847 -9.73388 -9.42186 -9.11126 -8.73291 -8.61120 -6.81491 -5.77574 -3.10771 0.48630 0.98341 2.84183 3.20231 3.38706 3.44394 3.46460 3.63237 3.81139 4.27856 4.46978 4.48295 4.57833 4.67372 4.72576 4.81541 4.88547 5.18141 5.23708 5.32600 5.33518 5.39196 5.41294 5.46218 5.48258 5.55059 5.60037 5.73566 5.74315 5.76332 5.79201 5.82324 5.86200 6.01111 6.08893 6.17375 6.32769 6.41665 6.43069 6.53055 6.73693 6.95562 7.39740 7.52603 7.60880 7.74109 7.75830 8.21972 8.30193 9.16648 9.78222 10.45551 11.35970 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.002491 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.854142 B =11238.948222 C =11566.978288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.193 3.807 3 N -0.490 5.490 4 C 0.161 3.839 5 C -0.050 4.050 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.187 4.187 9 C -0.036 4.036 10 C -0.192 4.192 11 C 0.560 3.440 12 O -0.527 6.527 13 N -0.710 5.710 14 C 0.132 3.868 15 H 0.097 0.903 16 C -0.151 4.151 17 C 0.176 3.824 18 N -0.601 5.601 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.128 3.872 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.396 0.604 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.025 0.975 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 23.360 -5.233 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.055 3.945 3 N -0.199 5.199 4 C 0.022 3.978 5 C -0.069 4.069 6 C -0.199 4.199 7 C -0.206 4.206 8 C -0.207 4.207 9 C -0.063 4.063 10 C -0.197 4.197 11 C 0.346 3.654 12 O -0.406 6.406 13 N -0.361 5.361 14 C 0.028 3.972 15 H 0.115 0.885 16 C -0.191 4.191 17 C 0.050 3.950 18 N -0.328 5.328 19 C -0.358 4.358 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.001 3.999 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.575 23.866 -5.105 25.554 hybrid contribution 1.180 -1.557 0.734 2.087 sum 8.755 22.309 -4.371 24.360 Atomic orbital electron populations 1.21045 0.87409 1.03704 1.04394 1.21516 0.97561 0.86367 0.89059 1.67467 1.09220 1.28829 1.14423 1.21436 0.89362 0.95431 0.91536 1.20112 0.96516 0.92697 0.97542 1.21805 1.01935 1.01540 0.94654 1.21935 0.96349 1.02476 0.99804 1.21884 1.01710 0.92357 1.04751 1.21786 0.93215 0.98803 0.92451 1.20846 0.94349 0.95262 1.09250 1.17985 0.87156 0.83336 0.76887 1.90742 1.13540 1.86984 1.49290 1.45990 1.10749 1.05892 1.73440 1.22130 0.96455 0.80910 0.97726 0.88513 1.23325 0.99228 0.97622 0.98888 1.21365 0.99006 0.91536 0.83074 1.44423 1.84724 1.00435 1.03246 1.19014 1.43762 0.86577 0.86434 0.90679 1.24853 1.01544 0.96963 0.96958 1.69941 1.54160 1.12914 1.19483 0.86115 0.77796 0.80772 0.81153 1.21542 1.21591 1.20595 1.21612 0.98298 0.86568 0.93422 0.89783 0.91431 0.87864 0.89044 0.91715 0.92177 0.92363 0.92259 0.91683 0.91985 0.84119 0.84308 0.76927 0.91499 0.91755 0.94955 0.91242 0.93645 0.95752 0.95362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.85 36.01 0.32 -1.05 16 2 C 0.19 2.55 6.82 -82.18 -0.56 1.99 16 3 N -0.49 -6.10 10.17 -5.42 -0.06 -6.16 16 4 C 0.16 1.63 5.79 -82.51 -0.48 1.15 16 5 C -0.05 -0.37 3.23 -91.77 -0.30 -0.66 16 6 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 7 C -0.15 -0.81 8.61 37.16 0.32 -0.49 16 8 C -0.19 -1.69 9.16 -39.49 -0.36 -2.05 16 9 C -0.04 -0.37 9.63 -38.87 -0.37 -0.74 16 10 C -0.19 -2.47 5.89 -104.83 -0.62 -3.08 16 11 C 0.56 8.46 7.70 -12.33 -0.09 8.36 16 12 O -0.53 -9.45 13.04 5.32 0.07 -9.38 16 13 N -0.71 -10.16 5.06 -52.97 -0.27 -10.43 16 14 C 0.13 2.34 3.32 -66.10 -0.22 2.12 16 15 H 0.10 1.83 7.55 -51.93 -0.39 1.44 16 16 C -0.15 -2.65 6.71 -24.58 -0.17 -2.81 16 17 C 0.18 4.13 5.39 -2.53 -0.01 4.11 16 18 N -0.60 -15.42 3.39 -170.07 -0.58 -15.99 16 19 C -0.23 -6.45 10.23 -15.06 -0.15 -6.60 16 20 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 21 C -0.01 -0.18 5.39 -17.43 -0.09 -0.27 16 22 N -0.92 -26.80 10.76 55.49 0.60 -26.20 16 23 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 C 0.13 2.77 6.99 -3.06 -0.02 2.75 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.43 5.90 -51.93 -0.31 1.12 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.29 6.48 -51.93 -0.34 -0.04 16 38 H 0.14 0.88 6.29 -52.49 -0.33 0.55 16 39 H 0.14 1.06 6.58 -52.49 -0.35 0.71 16 40 H 0.40 4.53 6.71 -40.82 -0.27 4.26 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 43 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 44 H 0.07 1.79 7.07 -51.93 -0.37 1.42 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.52 8.03 -51.93 -0.42 0.10 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -32.48 374.42 -9.46 -41.95 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.38 Total: 1.43 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.47 Total: 2.14 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.30 Total: -58.79 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.48 -9.46 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015716786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.412 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds