Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31693 * 119.71205 * 2 1 4 4 C 1.31930 * 121.87641 * 180.31271 * 3 2 1 5 5 C 1.50695 * 119.46269 * 179.67778 * 4 3 2 6 6 C 1.53004 * 109.47535 * 94.97499 * 5 4 3 7 7 C 1.53000 * 109.47202 * 214.97747 * 5 4 3 8 8 C 1.38354 * 121.08065 * 359.65312 * 4 3 2 9 9 C 1.38360 * 119.29763 * 0.02562 * 8 4 3 10 10 C 1.39512 * 119.71660 * 179.68205 * 2 1 3 11 11 C 1.47840 * 120.56228 * 359.97438 * 10 2 1 12 12 O 1.21551 * 119.99717 * 353.03753 * 11 10 2 13 13 N 1.34780 * 120.00057 * 173.02664 * 11 10 2 14 14 C 1.46503 * 119.99992 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.63724 * 31.86512 * 14 13 11 16 16 C 1.55155 * 110.72037 * 155.00162 * 14 13 11 17 17 C 1.54908 * 101.58042 * 153.86714 * 16 14 13 18 18 N 1.47427 * 104.83307 * 322.99093 * 17 16 14 19 19 C 1.36930 * 125.65048 * 204.10549 * 18 17 16 20 20 H 1.08000 * 120.00371 * 167.90836 * 19 18 17 21 21 C 1.38817 * 119.99977 * 347.90615 * 19 18 17 22 22 N 1.31614 * 119.99894 * 350.75107 * 21 19 18 23 23 Si 1.86798 * 120.00069 * 170.75208 * 21 19 18 24 24 H 1.48497 * 109.47344 * 94.97065 * 23 21 19 25 25 H 1.48501 * 109.47104 * 214.97227 * 23 21 19 26 26 H 1.48508 * 109.47019 * 334.97094 * 23 21 19 27 27 C 1.47024 * 108.70194 * 24.13162 * 18 17 16 28 28 H 1.09000 * 109.47867 * 263.50407 * 1 2 3 29 29 H 1.09002 * 109.47672 * 23.51022 * 1 2 3 30 30 H 1.09001 * 109.46937 * 143.50270 * 1 2 3 31 31 H 1.09003 * 109.47013 * 334.97884 * 5 4 3 32 32 H 1.08999 * 109.47019 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46777 * 300.00355 * 6 5 4 34 34 H 1.08994 * 109.46480 * 59.99988 * 6 5 4 35 35 H 1.09006 * 109.46916 * 60.00060 * 7 5 4 36 36 H 1.08999 * 109.47142 * 179.97438 * 7 5 4 37 37 H 1.08991 * 109.46938 * 299.99795 * 7 5 4 38 38 H 1.07991 * 120.35411 * 180.02562 * 8 4 3 39 39 H 1.08000 * 120.85328 * 179.97438 * 9 8 4 40 40 H 0.96994 * 119.99574 * 0.02562 * 13 11 10 41 41 H 1.08991 * 111.00488 * 271.94380 * 16 14 13 42 42 H 1.09003 * 111.00203 * 35.79854 * 16 14 13 43 43 H 1.08995 * 110.36870 * 81.82996 * 17 16 14 44 44 H 1.09000 * 110.36569 * 204.15384 * 17 16 14 45 45 H 0.97004 * 119.99830 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.88446 * 239.52165 * 27 18 17 47 47 H 1.08999 * 109.88295 * 118.35404 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4781 1.1936 -0.0061 5 6 4.1692 2.5327 -0.0131 6 6 4.5208 2.9329 1.4212 7 6 5.4496 2.4415 -0.8456 8 6 4.2366 0.0365 -0.0057 9 6 3.5987 -1.1912 0.0008 10 6 2.1986 -1.2116 0.0067 11 6 1.4656 -2.4955 0.0144 12 8 0.2569 -2.5045 0.1425 13 7 2.1376 -3.6560 -0.1209 14 6 1.4112 -4.9282 -0.1138 15 1 0.4172 -4.8054 -0.5438 16 6 2.2081 -6.0196 -0.8762 17 6 1.6883 -7.3131 -0.2007 18 7 1.5145 -6.9541 1.2186 19 6 1.5274 -7.8304 2.2708 20 1 1.5874 -7.4582 3.2828 21 6 1.4634 -9.1972 2.0366 22 7 1.2080 -9.6461 0.8261 23 14 1.7397 -10.3991 3.4396 24 1 0.4303 -10.7948 4.0175 25 1 2.4396 -11.6047 2.9279 26 1 2.5689 -9.7532 4.4887 27 6 1.3245 -5.4996 1.3171 28 1 -0.3635 -0.1163 1.0210 29 1 -0.3634 0.9423 -0.4099 30 1 -0.3633 -0.8261 -0.6113 31 1 3.5063 3.2814 -0.4470 32 1 5.0202 3.9017 1.4160 33 1 3.6085 2.9979 2.0142 34 1 5.1836 2.1842 1.8550 35 1 5.1991 2.1565 -1.8675 36 1 5.9493 3.4102 -0.8511 37 1 6.1124 1.6929 -0.4117 38 1 5.3151 0.0910 -0.0103 39 1 4.1660 -2.1102 0.0009 40 1 3.1022 -3.6487 -0.2229 41 1 1.9662 -6.0093 -1.9388 42 1 3.2804 -5.9011 -0.7200 43 1 0.7346 -7.6114 -0.6360 44 1 2.4199 -8.1146 -0.3025 45 1 1.1636 -10.6012 0.6624 46 1 2.1078 -5.0646 1.9380 47 1 0.3459 -5.2817 1.7447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015716786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = -4.860372 kcal Electronic energy + Delta-G solvation = -26240.385721 eV Core-core repulsion = 22615.547990 eV Total energy + Delta-G solvation = -3624.837731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97326 -40.53086 -38.90560 -36.65564 -35.81351 -34.32900 -33.37222 -32.46732 -31.01270 -29.31654 -28.40833 -27.85252 -26.52177 -25.56054 -23.49983 -22.67065 -22.19776 -21.48426 -21.00258 -19.17107 -18.59455 -17.99921 -17.23002 -16.74524 -16.68744 -16.26965 -16.01709 -15.87478 -15.42196 -15.04151 -14.89129 -14.60920 -14.22788 -14.19722 -13.99388 -13.90608 -13.82154 -13.55226 -13.20611 -13.07434 -12.91274 -12.80442 -12.73843 -12.49767 -12.26846 -12.17642 -12.05008 -12.02177 -11.86085 -11.84424 -11.57451 -10.99995 -10.90081 -10.72477 -10.43276 -10.21980 -9.81673 -8.88912 -7.91343 -5.27425 -0.40661 0.17471 1.45868 1.47014 1.56942 1.76912 1.99436 2.48822 2.71698 3.04828 3.28757 3.51505 3.61382 3.65687 3.73154 3.79344 3.99541 4.01597 4.14592 4.15885 4.23818 4.27779 4.53192 4.55607 4.63946 4.67108 4.71194 4.73240 4.82833 4.87976 4.88874 4.95155 4.97962 5.01533 5.02272 5.05142 5.22407 5.24442 5.37778 5.40305 5.45001 5.51456 5.55839 5.62091 5.68990 6.17568 6.47159 6.89552 7.05425 7.14519 7.71564 8.37846 9.20713 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.002491 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.854142 B =11238.948222 C =11566.978288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.175 3.825 3 N -0.510 5.510 4 C 0.155 3.845 5 C -0.049 4.049 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.179 4.179 9 C -0.030 4.030 10 C -0.209 4.209 11 C 0.560 3.440 12 O -0.563 6.563 13 N -0.697 5.697 14 C 0.151 3.849 15 H 0.083 0.917 16 C -0.127 4.127 17 C 0.177 3.823 18 N -0.621 5.621 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.979 3.021 24 H -0.288 1.288 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.127 3.873 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.414 0.586 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.000 1.000 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.033 0.967 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.012 24.842 -5.347 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 N -0.220 5.220 4 C 0.016 3.984 5 C -0.068 4.068 6 C -0.197 4.197 7 C -0.202 4.202 8 C -0.198 4.198 9 C -0.056 4.056 10 C -0.214 4.214 11 C 0.349 3.651 12 O -0.443 6.443 13 N -0.348 5.348 14 C 0.045 3.955 15 H 0.102 0.898 16 C -0.166 4.166 17 C 0.052 3.948 18 N -0.348 5.348 19 C -0.378 4.378 20 H 0.092 0.908 21 C -0.253 4.253 22 N -0.593 5.593 23 Si 0.807 3.193 24 H -0.215 1.215 25 H -0.214 1.214 26 H -0.193 1.193 27 C 0.001 3.999 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.194 0.806 39 H 0.185 0.815 40 H 0.252 0.748 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.018 0.982 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 10.678 25.387 -5.223 28.032 hybrid contribution 0.228 -1.902 0.792 2.073 sum 10.906 23.485 -4.431 26.270 Atomic orbital electron populations 1.20916 0.87989 1.03500 1.03573 1.21551 0.97659 0.87030 0.90041 1.67484 1.10679 1.28491 1.15333 1.22045 0.88819 0.97326 0.90168 1.20211 0.97182 0.91014 0.98429 1.21796 1.01356 1.02777 0.93728 1.21930 0.95314 1.03815 0.99119 1.22263 1.03343 0.91281 1.02880 1.22119 0.91944 1.00555 0.91006 1.20662 0.95616 0.93575 1.11565 1.18357 0.86845 0.84109 0.75826 1.90736 1.15281 1.87519 1.50752 1.45697 1.11475 1.04370 1.73303 1.21664 0.96567 0.82365 0.94911 0.89842 1.23133 1.00298 0.93484 0.99692 1.21207 0.96952 0.93924 0.82727 1.44716 1.84680 1.01816 1.03611 1.19356 1.43640 0.87535 0.87293 0.90778 1.25688 1.01626 0.98551 0.99461 1.70130 1.55017 1.12887 1.21301 0.85071 0.77557 0.78292 0.78417 1.21540 1.21441 1.19343 1.21701 0.97128 0.84926 0.96178 0.90656 0.90455 0.89440 0.89833 0.89909 0.93969 0.91716 0.92638 0.90255 0.90686 0.80642 0.81476 0.74807 0.88654 0.89238 0.98166 0.93967 0.94027 0.94911 0.97759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 8.85 71.24 0.63 -2.06 16 2 C 0.18 4.59 6.82 42.89 0.29 4.88 16 3 N -0.51 -12.30 10.17 -171.06 -1.74 -14.04 16 4 C 0.15 2.80 5.79 42.57 0.25 3.04 16 5 C -0.05 -0.61 3.23 -11.54 -0.04 -0.65 16 6 C -0.14 -1.49 9.18 71.98 0.66 -0.83 16 7 C -0.14 -1.05 8.61 71.98 0.62 -0.43 16 8 C -0.18 -2.57 9.16 22.33 0.20 -2.36 16 9 C -0.03 -0.52 9.63 22.73 0.22 -0.30 16 10 C -0.21 -5.11 5.89 -20.00 -0.12 -5.23 16 11 C 0.56 16.56 7.70 86.78 0.67 17.22 16 12 O -0.56 -20.63 13.04 -3.88 -0.05 -20.68 16 13 N -0.70 -18.62 5.06 -439.78 -2.22 -20.84 16 14 C 0.15 5.22 3.32 46.18 0.15 5.37 16 15 H 0.08 3.17 7.55 -2.38 -0.02 3.15 16 16 C -0.13 -4.22 6.71 31.99 0.21 -4.01 16 17 C 0.18 8.47 5.39 86.85 0.47 8.94 16 18 N -0.62 -32.41 3.39 -691.99 -2.35 -34.76 16 19 C -0.25 -14.23 10.23 84.04 0.86 -13.37 16 20 H 0.07 4.12 7.85 -2.91 -0.02 4.10 16 21 C -0.06 -3.39 5.39 84.86 0.46 -2.93 16 22 N -0.95 -56.51 10.76 21.65 0.23 -56.28 16 23 Si 0.98 45.69 29.56 68.60 2.03 47.72 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.13 5.55 6.99 86.73 0.61 6.16 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.56 5.90 -2.39 -0.01 2.54 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.07 0.36 6.48 -2.39 -0.02 0.35 16 38 H 0.18 1.28 6.29 -2.92 -0.02 1.26 16 39 H 0.17 1.78 6.58 -2.91 -0.02 1.76 16 40 H 0.41 8.04 6.71 -92.71 -0.62 7.42 16 41 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 43 H 0.00 0.02 8.03 -2.39 -0.02 0.00 16 44 H 0.04 2.22 7.07 -2.39 -0.02 2.20 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 46 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -73.59 374.42 2.40 -71.19 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.35 Total: 14.24 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.15 Total: 13.45 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.08 Total: -125.92 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.59 2.40 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015716786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.334 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds