Wall clock time and date at job start Tue Mar 31 2020 11:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38351 * 119.46401 * 2 1 4 4 C 1.38357 * 119.30810 * 179.97438 * 3 2 1 5 5 C 1.40025 * 118.28561 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55597 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00083 * 130.06551 * 6 5 4 8 8 N 1.34779 * 119.99785 * 310.05857 * 6 5 4 9 9 C 1.47020 * 125.65252 * 354.56735 * 8 6 5 10 10 C 1.54319 * 107.27247 * 179.20398 * 9 8 6 11 11 C 1.55156 * 102.94542 * 337.81178 * 10 9 8 12 12 H 1.08999 * 111.00027 * 277.42813 * 11 10 9 13 13 N 1.46497 * 111.00608 * 153.57138 * 11 10 9 14 14 C 1.36942 * 119.99770 * 161.34804 * 13 11 10 15 15 H 1.08000 * 119.99960 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99586 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00402 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99572 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46990 * 120.00504 * 18 16 14 21 21 H 1.48507 * 109.46927 * 239.99751 * 18 16 14 22 22 C 1.47430 * 125.64295 * 174.88200 * 8 6 5 23 23 C 1.39513 * 118.88131 * 0.25228 * 5 4 3 24 24 C 1.50706 * 119.71652 * 179.74862 * 23 5 4 25 25 C 1.53007 * 109.47221 * 124.25414 * 24 23 5 26 26 C 1.52995 * 109.47200 * 244.25315 * 24 23 5 27 27 N 1.31698 * 120.57061 * 359.49930 * 23 5 4 28 28 H 1.08998 * 109.46640 * 90.00270 * 1 2 3 29 29 H 1.09003 * 109.46884 * 210.00370 * 1 2 3 30 30 H 1.08998 * 109.46993 * 330.00511 * 1 2 3 31 31 H 1.08003 * 120.34270 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.85597 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.88182 * 298.62899 * 9 8 6 34 34 H 1.09007 * 109.87841 * 59.78808 * 9 8 6 35 35 H 1.09006 * 110.71953 * 219.44564 * 10 9 8 36 36 H 1.08999 * 110.71577 * 96.17522 * 10 9 8 37 37 H 0.96997 * 120.00098 * 341.35212 * 13 11 10 38 38 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.36336 * 322.69654 * 22 8 6 40 40 H 1.08996 * 110.36498 * 84.91472 * 22 8 6 41 41 H 1.08998 * 109.46923 * 4.25428 * 24 23 5 42 42 H 1.08998 * 109.47161 * 60.00159 * 25 24 23 43 43 H 1.08998 * 109.46770 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47015 * 300.00150 * 25 24 23 45 45 H 1.09002 * 109.47566 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47275 * 299.99898 * 26 24 23 47 47 H 1.09004 * 109.47208 * 59.99906 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2313 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.2869 -0.7986 0.8079 8 7 6.4134 0.6246 -0.8924 9 6 5.8451 1.4221 -1.9890 10 6 7.0241 2.0840 -2.7329 11 6 8.1541 2.0766 -1.6696 12 1 8.0556 2.9222 -0.9890 13 7 9.4737 2.0681 -2.3058 14 6 10.5808 2.4402 -1.5908 15 1 10.4812 2.7394 -0.5579 16 6 11.8311 2.4326 -2.1938 17 7 11.9525 2.0684 -3.4527 18 14 13.3414 2.9395 -1.2184 19 1 12.9392 3.3013 0.1645 20 1 14.3041 1.8096 -1.1738 21 1 13.9820 4.1099 -1.8704 22 6 7.8826 0.7391 -0.9365 23 6 3.4716 -1.2042 -0.0033 24 6 4.1627 -2.5435 -0.0080 25 6 3.6744 -3.3736 1.1810 26 6 3.8406 -3.2791 -1.3102 27 7 2.1559 -1.1487 0.0011 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6444 2.1381 0.0004 32 1 4.1275 2.1264 0.0001 33 1 5.2931 0.7750 -2.6705 34 1 5.1839 2.1891 -1.5855 35 1 6.7735 3.1046 -3.0222 36 1 7.3103 1.4943 -3.6038 37 1 9.5632 1.7990 -3.2334 38 1 12.8262 2.0627 -3.8739 39 1 8.2911 0.7705 0.0736 40 1 8.3114 -0.0943 -1.4929 41 1 5.2400 -2.3967 0.0695 42 1 2.5971 -3.5204 1.1035 43 1 4.1746 -4.3420 1.1778 44 1 3.9039 -2.8495 2.1087 45 1 4.3408 -4.2476 -1.3138 46 1 2.7633 -3.4259 -1.3876 47 1 4.1885 -2.6877 -2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019203680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:00 Heat of formation + Delta-G solvation = 4.593548 kcal Electronic energy + Delta-G solvation = -26803.050354 eV Core-core repulsion = 23178.622576 eV Total energy + Delta-G solvation = -3624.427778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05603 -39.35018 -37.37830 -35.70786 -34.25698 -33.22769 -31.59020 -31.48465 -29.70395 -28.54327 -27.32521 -27.17026 -24.59535 -23.95266 -23.12917 -22.21003 -20.63199 -20.23820 -19.53690 -17.56820 -17.07103 -16.84227 -16.07512 -15.94471 -15.42693 -14.87208 -14.66524 -14.48778 -14.16179 -13.84305 -13.70374 -13.47860 -13.33129 -13.16797 -12.97186 -12.80953 -12.53816 -12.47992 -12.36023 -12.24367 -12.11007 -11.57350 -11.43686 -11.21226 -11.13662 -10.89197 -10.83588 -10.76800 -10.36556 -10.10086 -10.01753 -9.96888 -9.80787 -9.49509 -9.05128 -8.99965 -8.40717 -7.12163 -5.87462 -3.18477 0.61662 1.00713 2.71123 3.08066 3.38976 3.45612 3.47251 3.52716 3.90210 4.33416 4.41932 4.49292 4.53814 4.78168 4.87430 4.98670 5.06625 5.09887 5.12817 5.17864 5.25930 5.28404 5.29165 5.45012 5.56692 5.62400 5.64544 5.65972 5.71401 5.72461 5.80153 5.81687 5.88002 5.94544 6.00312 6.07000 6.19456 6.19901 6.26532 6.31737 6.45642 6.47135 6.55233 6.82631 7.62997 7.64033 7.77049 8.21720 8.30141 9.42268 9.94616 10.29459 11.34558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002917 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.838622 B = 9595.811146 C =10165.806171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.143 3.857 3 C -0.183 4.183 4 C -0.039 4.039 5 C -0.177 4.177 6 C 0.575 3.425 7 O -0.531 6.531 8 N -0.606 5.606 9 C 0.103 3.897 10 C -0.140 4.140 11 C 0.173 3.827 12 H 0.065 0.935 13 N -0.711 5.711 14 C -0.248 4.248 15 H 0.073 0.927 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.082 3.918 23 C 0.192 3.808 24 C -0.063 4.063 25 C -0.132 4.132 26 C -0.138 4.138 27 N -0.480 5.480 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.024 -3.613 3.894 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.203 4.203 4 C -0.065 4.065 5 C -0.182 4.182 6 C 0.362 3.638 7 O -0.409 6.409 8 N -0.339 5.339 9 C -0.020 4.020 10 C -0.179 4.179 11 C 0.060 3.940 12 H 0.083 0.917 13 N -0.351 5.351 14 C -0.379 4.379 15 H 0.091 0.909 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.043 4.043 23 C 0.053 3.947 24 C -0.082 4.082 25 C -0.190 4.190 26 C -0.196 4.196 27 N -0.189 5.189 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.061 -4.714 4.478 24.924 hybrid contribution 1.391 1.105 0.125 1.781 sum -22.671 -3.609 4.603 23.413 Atomic orbital electron populations 1.20747 0.88604 1.03599 1.03239 1.21459 0.97124 0.88257 0.92656 1.21861 0.94393 0.99465 1.04600 1.21746 0.94476 0.97315 0.92952 1.20795 0.94629 0.94983 1.07834 1.17689 0.85834 0.79531 0.80739 1.90774 1.71136 1.39670 1.39312 1.48501 1.08922 1.47216 1.29270 1.22104 0.96977 0.94310 0.88644 1.22913 0.94783 1.01032 0.99126 1.21311 0.86037 0.93782 0.92856 0.91740 1.42311 1.00602 1.79541 1.12683 1.19293 0.85705 1.37806 0.95120 0.90867 1.24773 0.97748 1.01764 0.96196 1.69664 1.23362 1.53629 1.11028 0.86104 0.83133 0.77790 0.79065 1.20404 1.21708 1.21748 1.23490 0.76796 1.01544 1.02435 1.21262 0.88618 0.94433 0.90419 1.20427 1.01080 0.89753 0.96933 1.21673 1.01458 0.99053 0.96780 1.21771 1.02155 0.99930 0.95733 1.67331 1.08858 1.28904 1.13856 0.90164 0.90330 0.90569 0.84309 0.84109 0.91884 0.91721 0.90058 0.90306 0.77806 0.93356 0.90960 0.91198 0.87726 0.91939 0.92224 0.92779 0.91943 0.91898 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.16 36.01 0.37 -0.31 16 2 C 0.14 1.43 6.78 -82.51 -0.56 0.87 16 3 C -0.18 -1.67 9.72 -39.50 -0.38 -2.05 16 4 C -0.04 -0.42 8.55 -38.87 -0.33 -0.76 16 5 C -0.18 -2.43 5.28 -104.82 -0.55 -2.98 16 6 C 0.57 9.43 6.64 -12.33 -0.08 9.35 16 7 O -0.53 -10.40 15.36 5.32 0.08 -10.32 16 8 N -0.61 -9.51 3.33 -171.63 -0.57 -10.09 16 9 C 0.10 1.30 6.12 -3.07 -0.02 1.28 16 10 C -0.14 -2.01 6.58 -24.90 -0.16 -2.17 16 11 C 0.17 3.20 3.69 -65.78 -0.24 2.96 16 12 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 13 N -0.71 -16.86 5.28 -51.35 -0.27 -17.13 16 14 C -0.25 -6.64 9.98 -15.06 -0.15 -6.79 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 C 0.08 1.52 6.58 -2.52 -0.02 1.50 16 23 C 0.19 2.57 5.50 -82.17 -0.45 2.12 16 24 C -0.06 -0.82 2.92 -91.77 -0.27 -1.09 16 25 C -0.13 -1.54 9.06 37.16 0.34 -1.21 16 26 C -0.14 -1.55 9.13 37.15 0.34 -1.22 16 27 N -0.48 -5.88 9.71 -5.42 -0.05 -5.94 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.14 1.32 6.78 -52.49 -0.36 0.97 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.68 6.02 -51.92 -0.31 0.36 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 37 H 0.39 9.70 7.71 -40.82 -0.31 9.39 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.10 1.62 5.20 -51.93 -0.27 1.35 16 42 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -31.60 381.34 -9.18 -40.78 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.54 Total: 7.32 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.28 Total: -0.82 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.17 Total: -59.65 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.60 -9.18 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019203680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.378 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds