Wall clock time and date at job start Tue Mar 31 2020 11:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38351 * 119.46401 * 2 1 4 4 C 1.38357 * 119.30810 * 179.97438 * 3 2 1 5 5 C 1.40025 * 118.28561 * 359.97438 * 4 3 2 6 6 C 1.47841 * 120.55597 * 179.97438 * 5 4 3 7 7 O 1.21550 * 120.00083 * 130.06551 * 6 5 4 8 8 N 1.34779 * 119.99785 * 310.05857 * 6 5 4 9 9 C 1.47020 * 125.65252 * 354.56735 * 8 6 5 10 10 C 1.54319 * 107.27247 * 179.20398 * 9 8 6 11 11 C 1.55156 * 102.94542 * 337.81178 * 10 9 8 12 12 H 1.08999 * 111.00027 * 277.42813 * 11 10 9 13 13 N 1.46497 * 111.00608 * 153.57138 * 11 10 9 14 14 C 1.36942 * 119.99770 * 161.34804 * 13 11 10 15 15 H 1.08000 * 119.99960 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99586 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00402 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99572 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47490 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46990 * 120.00504 * 18 16 14 21 21 H 1.48507 * 109.46927 * 239.99751 * 18 16 14 22 22 C 1.47430 * 125.64295 * 174.88200 * 8 6 5 23 23 C 1.39513 * 118.88131 * 0.25228 * 5 4 3 24 24 C 1.50706 * 119.71652 * 179.74862 * 23 5 4 25 25 C 1.53007 * 109.47221 * 124.25414 * 24 23 5 26 26 C 1.52995 * 109.47200 * 244.25315 * 24 23 5 27 27 N 1.31698 * 120.57061 * 359.49930 * 23 5 4 28 28 H 1.08998 * 109.46640 * 90.00270 * 1 2 3 29 29 H 1.09003 * 109.46884 * 210.00370 * 1 2 3 30 30 H 1.08998 * 109.46993 * 330.00511 * 1 2 3 31 31 H 1.08003 * 120.34270 * 0.02562 * 3 2 1 32 32 H 1.08001 * 120.85597 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.88182 * 298.62899 * 9 8 6 34 34 H 1.09007 * 109.87841 * 59.78808 * 9 8 6 35 35 H 1.09006 * 110.71953 * 219.44564 * 10 9 8 36 36 H 1.08999 * 110.71577 * 96.17522 * 10 9 8 37 37 H 0.96997 * 120.00098 * 341.35212 * 13 11 10 38 38 H 0.96998 * 120.00282 * 180.02562 * 17 16 14 39 39 H 1.09001 * 110.36336 * 322.69654 * 22 8 6 40 40 H 1.08996 * 110.36498 * 84.91472 * 22 8 6 41 41 H 1.08998 * 109.46923 * 4.25428 * 24 23 5 42 42 H 1.08998 * 109.47161 * 60.00159 * 25 24 23 43 43 H 1.08998 * 109.46770 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47015 * 300.00150 * 25 24 23 45 45 H 1.09002 * 109.47566 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47275 * 299.99898 * 26 24 23 47 47 H 1.09004 * 109.47208 * 59.99906 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0005 5 6 4.2313 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.2869 -0.7986 0.8079 8 7 6.4134 0.6246 -0.8924 9 6 5.8451 1.4221 -1.9890 10 6 7.0241 2.0840 -2.7329 11 6 8.1541 2.0766 -1.6696 12 1 8.0556 2.9222 -0.9890 13 7 9.4737 2.0681 -2.3058 14 6 10.5808 2.4402 -1.5908 15 1 10.4812 2.7394 -0.5579 16 6 11.8311 2.4326 -2.1938 17 7 11.9525 2.0684 -3.4527 18 14 13.3414 2.9395 -1.2184 19 1 12.9392 3.3013 0.1645 20 1 14.3041 1.8096 -1.1738 21 1 13.9820 4.1099 -1.8704 22 6 7.8826 0.7391 -0.9365 23 6 3.4716 -1.2042 -0.0033 24 6 4.1627 -2.5435 -0.0080 25 6 3.6744 -3.3736 1.1810 26 6 3.8406 -3.2791 -1.3102 27 7 2.1559 -1.1487 0.0011 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6444 2.1381 0.0004 32 1 4.1275 2.1264 0.0001 33 1 5.2931 0.7750 -2.6705 34 1 5.1839 2.1891 -1.5855 35 1 6.7735 3.1046 -3.0222 36 1 7.3103 1.4943 -3.6038 37 1 9.5632 1.7990 -3.2334 38 1 12.8262 2.0627 -3.8739 39 1 8.2911 0.7705 0.0736 40 1 8.3114 -0.0943 -1.4929 41 1 5.2400 -2.3967 0.0695 42 1 2.5971 -3.5204 1.1035 43 1 4.1746 -4.3420 1.1778 44 1 3.9039 -2.8495 2.1087 45 1 4.3408 -4.2476 -1.3138 46 1 2.7633 -3.4259 -1.3876 47 1 4.1885 -2.6877 -2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019203680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:59 Heat of formation + Delta-G solvation = -14.936711 kcal Electronic energy + Delta-G solvation = -26803.897250 eV Core-core repulsion = 23178.622576 eV Total energy + Delta-G solvation = -3625.274673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04545 -40.52633 -38.74265 -36.65903 -35.97403 -34.26236 -33.15323 -32.38613 -31.17555 -29.60897 -28.57324 -28.09710 -26.11622 -25.04971 -24.42269 -23.22520 -21.83383 -21.44710 -20.73157 -19.34894 -18.42002 -17.84148 -17.45277 -16.86341 -16.66079 -16.29248 -15.68855 -15.57707 -15.42173 -15.09521 -15.01401 -14.77324 -14.59771 -14.19061 -14.14734 -13.83612 -13.78480 -13.46642 -13.22833 -13.14979 -12.99762 -12.94429 -12.91830 -12.58265 -12.38365 -12.31349 -12.15519 -12.07846 -11.87218 -11.79356 -11.64996 -11.19106 -11.02989 -10.85843 -10.44413 -9.87624 -9.70380 -9.10091 -7.99136 -5.29153 -0.27087 0.18879 1.46221 1.47886 1.50876 1.57022 1.84962 2.53600 2.65326 3.08386 3.28397 3.37207 3.57994 3.59914 3.70909 3.91022 3.99415 4.01702 4.14635 4.17326 4.22373 4.28003 4.31626 4.39419 4.50411 4.60416 4.69811 4.73849 4.74326 4.80819 4.81403 4.84373 4.89404 4.95204 5.00804 5.06191 5.09224 5.14290 5.16157 5.22146 5.25635 5.33356 5.37667 5.50973 5.67382 6.22817 6.40582 6.90980 6.95612 7.30335 8.01182 8.25138 9.23735 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002917 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.838622 B = 9595.811146 C =10165.806171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.171 4.171 4 C -0.038 4.038 5 C -0.200 4.200 6 C 0.574 3.426 7 O -0.575 6.575 8 N -0.605 5.605 9 C 0.107 3.893 10 C -0.127 4.127 11 C 0.168 3.832 12 H 0.068 0.932 13 N -0.723 5.723 14 C -0.246 4.246 15 H 0.075 0.925 16 C -0.069 4.069 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.290 1.290 22 C 0.093 3.907 23 C 0.178 3.822 24 C -0.068 4.068 25 C -0.125 4.125 26 C -0.130 4.130 27 N -0.494 5.494 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.179 0.821 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.378 0.622 38 H 0.252 0.748 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.294 -2.047 4.029 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.001 3.999 3 C -0.190 4.190 4 C -0.064 4.064 5 C -0.205 4.205 6 C 0.363 3.637 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.015 4.015 10 C -0.165 4.165 11 C 0.057 3.943 12 H 0.086 0.914 13 N -0.362 5.362 14 C -0.377 4.377 15 H 0.093 0.907 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.798 3.202 19 H -0.192 1.192 20 H -0.223 1.223 21 H -0.217 1.217 22 C -0.033 4.033 23 C 0.040 3.960 24 C -0.087 4.087 25 C -0.182 4.182 26 C -0.188 4.188 27 N -0.204 5.204 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.197 0.803 32 H 0.176 0.824 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.211 0.789 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -27.390 -3.132 4.627 27.954 hybrid contribution 2.246 0.606 0.129 2.330 sum -25.144 -2.526 4.756 25.714 Atomic orbital electron populations 1.20869 0.85905 1.04730 1.04426 1.22187 0.98903 0.87993 0.90843 1.22272 0.93566 1.00759 1.02384 1.21982 0.95511 0.96614 0.92291 1.20599 0.92447 0.96613 1.10885 1.18192 0.87175 0.78468 0.79831 1.90741 1.72342 1.41447 1.41063 1.48493 1.07516 1.47635 1.30081 1.22288 0.96510 0.94885 0.87836 1.22848 0.93347 1.02735 0.97612 1.21468 0.85279 0.93338 0.94227 0.91435 1.42438 1.01932 1.79519 1.12303 1.19621 0.86789 1.36058 0.95261 0.90698 1.25517 1.00452 1.02969 0.97203 1.69796 1.23525 1.55658 1.12467 0.85146 0.79747 0.76995 0.78295 1.19235 1.22321 1.21660 1.23044 0.79001 1.00687 1.00522 1.21235 0.89331 0.94222 0.91215 1.20378 0.99348 0.90738 0.98218 1.21613 1.01948 0.99116 0.95567 1.21706 1.02598 0.99973 0.94503 1.67377 1.08017 1.30374 1.14641 0.88745 0.90732 0.87964 0.80325 0.82437 0.90333 0.88357 0.87530 0.90902 0.78877 0.93867 0.93362 0.93594 0.90815 0.91128 0.91214 0.94288 0.91072 0.91165 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.16 71.24 0.72 -0.18 16 2 C 0.14 2.29 6.78 42.57 0.29 2.58 16 3 C -0.17 -2.36 9.72 22.33 0.22 -2.14 16 4 C -0.04 -0.72 8.55 22.73 0.19 -0.52 16 5 C -0.20 -5.31 5.28 -19.99 -0.11 -5.41 16 6 C 0.57 19.17 6.64 86.78 0.58 19.75 16 7 O -0.57 -23.82 15.36 -3.87 -0.06 -23.88 16 8 N -0.60 -18.93 3.33 -815.18 -2.71 -21.64 16 9 C 0.11 2.44 6.12 86.73 0.53 2.98 16 10 C -0.13 -3.42 6.58 31.78 0.21 -3.21 16 11 C 0.17 6.20 3.69 46.39 0.17 6.37 16 12 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 13 N -0.72 -34.80 5.28 -316.37 -1.67 -36.47 16 14 C -0.25 -13.30 9.98 84.03 0.84 -12.46 16 15 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 17 N -0.96 -57.70 13.06 21.65 0.28 -57.42 16 18 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.09 3.58 6.58 86.86 0.57 4.15 16 23 C 0.18 4.69 5.50 42.89 0.24 4.93 16 24 C -0.07 -1.81 2.92 -11.54 -0.03 -1.84 16 25 C -0.12 -2.96 9.06 71.98 0.65 -2.31 16 26 C -0.13 -2.91 9.13 71.98 0.66 -2.25 16 27 N -0.49 -11.22 9.71 -171.05 -1.66 -12.88 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.40 8.07 -2.39 -0.02 0.38 16 31 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 32 H 0.16 2.34 6.78 -2.91 -0.02 2.32 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.64 6.02 -2.38 -0.01 1.63 16 35 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 37 H 0.38 19.39 7.71 -92.71 -0.71 18.68 16 38 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 2.44 5.20 -2.39 -0.01 2.42 16 42 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 47 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -71.87 381.34 2.65 -69.21 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.25 Total: 28.27 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.19 Total: 7.03 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -5.76 Total: -128.41 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.87 2.65 -69.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019203680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.277 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds