Wall clock time and date at job start Tue Mar 31 2020 11:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38145 * 119.55539 * 2 1 4 4 C 1.39812 * 119.00586 * 180.02562 * 3 2 1 5 5 C 1.48152 * 120.92648 * 180.02562 * 4 3 2 6 6 O 1.21509 * 119.99553 * 0.27493 * 5 4 3 7 7 N 1.34775 * 120.00251 * 179.97438 * 5 4 3 8 8 C 1.46490 * 120.00100 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47178 * 180.02562 * 8 7 5 10 10 H 1.08990 * 109.58703 * 60.06606 * 9 8 7 11 11 C 1.53198 * 109.58627 * 180.49886 * 9 8 7 12 12 C 1.53039 * 109.31010 * 174.42286 * 11 9 8 13 13 C 1.53038 * 109.53659 * 298.62883 * 12 11 9 14 14 C 1.53191 * 109.31085 * 61.36996 * 13 12 11 15 15 N 1.46924 * 109.58335 * 299.78207 * 9 8 7 16 16 C 1.36936 * 120.63321 * 6.58328 * 15 9 8 17 17 H 1.07998 * 120.00303 * 328.99238 * 16 15 9 18 18 C 1.38818 * 119.99804 * 148.98777 * 16 15 9 19 19 N 1.31621 * 120.00199 * 345.92846 * 18 16 15 20 20 Si 1.86800 * 119.99942 * 165.93276 * 18 16 15 21 21 H 1.48497 * 109.47201 * 89.99916 * 20 18 16 22 22 H 1.48499 * 109.47168 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.46894 * 329.99763 * 20 18 16 24 24 C 1.39814 * 118.15288 * 0.27172 * 4 3 2 25 25 C 1.38158 * 119.00111 * 359.48794 * 24 4 3 26 26 C 1.50694 * 119.55192 * 180.26941 * 25 24 4 27 27 N 1.31807 * 119.54921 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46774 * 89.99273 * 1 2 3 29 29 H 1.08992 * 109.46692 * 210.00067 * 1 2 3 30 30 H 1.09007 * 109.46679 * 329.99998 * 1 2 3 31 31 H 1.08004 * 120.49599 * 359.97438 * 3 2 1 32 32 H 0.97004 * 119.99997 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.47778 * 300.00688 * 8 7 5 34 34 H 1.09004 * 109.46814 * 60.00583 * 8 7 5 35 35 H 1.09000 * 109.49358 * 294.37304 * 11 9 8 36 36 H 1.08997 * 109.49857 * 54.46961 * 11 9 8 37 37 H 1.09002 * 109.45448 * 178.60972 * 12 11 9 38 38 H 1.09002 * 109.44955 * 58.64602 * 12 11 9 39 39 H 1.09001 * 109.50137 * 301.41410 * 13 12 11 40 40 H 1.09002 * 109.49271 * 181.31710 * 13 12 11 41 41 H 1.09003 * 109.58384 * 185.57660 * 14 13 12 42 42 H 1.09000 * 109.70306 * 65.22373 * 14 13 12 43 43 H 0.97000 * 119.99649 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.50025 * 179.72152 * 24 4 3 45 45 H 1.08996 * 109.47270 * 270.25319 * 26 25 24 46 46 H 1.09006 * 109.47260 * 30.25437 * 26 25 24 47 47 H 1.09002 * 109.47488 * 150.25315 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1885 1.2017 0.0000 4 6 3.5866 1.1883 -0.0005 5 6 4.3601 2.4518 0.0000 6 8 3.7798 3.5194 0.0060 7 7 5.7074 2.4172 0.0000 8 6 6.4723 3.6665 0.0000 9 6 7.9689 3.3483 -0.0007 10 1 8.2193 2.7714 -0.8908 11 6 8.7713 4.6533 0.0118 12 6 10.2607 4.3302 0.1515 13 6 10.5043 3.6007 1.4746 14 6 9.7214 2.2839 1.4787 15 7 8.3080 2.5731 1.2004 16 6 7.3257 2.1290 2.0447 17 1 6.4163 2.6995 2.1625 18 6 7.4986 0.9453 2.7489 19 7 8.4605 0.1129 2.4109 20 14 6.3662 0.5338 4.1764 21 1 5.1934 -0.2264 3.6746 22 1 7.1013 -0.2893 5.1701 23 1 5.9037 1.7900 4.8193 24 6 4.2344 -0.0507 -0.0069 25 6 3.4740 -1.2042 -0.0016 26 6 4.1594 -2.5462 -0.0022 27 7 2.1571 -1.1466 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6493 2.1375 -0.0004 32 1 6.1707 1.5649 -0.0008 33 1 6.2237 4.2448 -0.8899 34 1 6.2238 4.2446 0.8900 35 1 8.6020 5.1934 -0.9197 36 1 8.4521 5.2686 0.8529 37 1 10.8360 5.2558 0.1358 38 1 10.5734 3.6942 -0.6768 39 1 10.1688 4.2260 2.3020 40 1 11.5684 3.3917 1.5842 41 1 9.8117 1.8083 2.4553 42 1 10.1166 1.6191 0.7106 43 1 8.5815 -0.7140 2.9033 44 1 5.3130 -0.1053 -0.0121 45 1 4.3242 -2.8696 -1.0299 46 1 5.1175 -2.4652 0.5113 47 1 3.5323 -3.2748 0.5117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024463021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:59 Heat of formation + Delta-G solvation = 6.912697 kcal Electronic energy + Delta-G solvation = -27626.011078 eV Core-core repulsion = 24001.683866 eV Total energy + Delta-G solvation = -3624.327212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45975 -38.95910 -37.69224 -34.38186 -33.58371 -33.13110 -32.72019 -30.67806 -29.96672 -29.01398 -26.72037 -26.14587 -25.06490 -23.24818 -22.19071 -21.75661 -20.73426 -19.76282 -19.11924 -17.37413 -16.61511 -16.29267 -15.70083 -15.37689 -14.99528 -14.81286 -14.37723 -14.26326 -14.03788 -13.72577 -13.46772 -13.31649 -13.20413 -13.01749 -12.85351 -12.49455 -12.35683 -12.08230 -12.03209 -11.94000 -11.71767 -11.50373 -11.24951 -11.01768 -10.81183 -10.61252 -10.35163 -10.20572 -10.05055 -9.89605 -9.60867 -9.57965 -9.45278 -9.21197 -8.66349 -8.65040 -8.32566 -6.73165 -5.91817 -3.38027 0.97378 1.21878 3.22909 3.28537 3.36522 3.40944 3.62519 4.02960 4.25163 4.37145 4.74903 4.91993 5.16144 5.17115 5.22444 5.25459 5.43590 5.48739 5.54721 5.57183 5.58992 5.62552 5.65881 5.71370 5.73973 5.90667 5.96872 6.00429 6.08762 6.15233 6.18793 6.23753 6.31107 6.33445 6.36019 6.54511 6.65584 6.68539 6.78605 6.80769 6.90798 7.04961 7.32618 7.59170 7.72118 8.07152 8.11171 8.33188 8.68332 9.09147 9.70420 10.28626 11.14565 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.004767 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.274609 B = 5871.968374 C = 6896.533246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.118 3.882 3 C -0.127 4.127 4 C -0.072 4.072 5 C 0.549 3.451 6 O -0.554 6.554 7 N -0.682 5.682 8 C 0.133 3.867 9 C 0.160 3.840 10 H 0.033 0.967 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.144 4.144 14 C 0.173 3.827 15 N -0.588 5.588 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.012 3.988 19 N -0.897 5.897 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.279 1.279 24 C -0.136 4.136 25 C 0.128 3.872 26 C -0.104 4.104 27 N -0.476 5.476 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.416 0.584 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.255 0.745 44 H 0.146 0.854 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 -0.051 -6.487 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 C -0.148 4.148 4 C -0.083 4.083 5 C 0.335 3.665 6 O -0.435 6.435 7 N -0.333 5.333 8 C 0.009 3.991 9 C 0.053 3.947 10 H 0.050 0.950 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.184 4.184 14 C 0.048 3.952 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.187 4.187 19 N -0.541 5.541 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.214 1.214 23 H -0.205 1.205 24 C -0.157 4.157 25 C -0.010 4.010 26 C -0.161 4.161 27 N -0.188 5.188 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.164 0.836 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.142 -0.226 -6.400 8.874 hybrid contribution 0.326 0.154 0.966 1.031 sum -5.816 -0.071 -5.434 7.960 Atomic orbital electron populations 1.20675 0.88618 1.03421 1.02945 1.21177 0.96965 0.87860 0.95960 1.22016 0.93390 0.99748 0.99638 1.20464 0.94352 0.93894 0.99588 1.18100 0.82777 0.88002 0.77669 1.90703 1.70318 1.30719 1.51729 1.45952 1.04899 1.11466 1.70940 1.21361 0.90974 0.85735 1.00995 1.20740 0.90720 0.92088 0.91155 0.94981 1.21936 0.95985 0.98174 1.00585 1.21360 0.95695 0.99007 0.98434 1.22193 0.99123 1.00497 0.96542 1.20758 0.82182 0.90897 1.01356 1.44077 1.02384 1.62307 1.22507 1.19182 0.98848 1.01827 1.18456 0.91369 1.25022 0.98153 0.95425 1.00139 1.70002 1.33389 1.10264 1.40397 0.86543 0.80498 0.78302 0.83111 1.21098 1.21413 1.20482 1.22322 1.02090 0.91943 0.99333 1.21196 0.89023 0.95834 0.94930 1.20735 1.00320 0.92019 1.03049 1.67176 1.09755 1.29531 1.12336 0.90516 0.90538 0.90652 0.83852 0.74523 0.92356 0.91285 0.92987 0.92033 0.93677 0.92858 0.92821 0.93507 0.89756 0.96301 0.93524 0.83595 0.90396 0.89978 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 36.01 0.37 -0.69 16 2 C 0.12 1.74 6.78 -82.63 -0.56 1.18 16 3 C -0.13 -2.03 9.31 -39.03 -0.36 -2.40 16 4 C -0.07 -1.28 5.91 -104.65 -0.62 -1.90 16 5 C 0.55 10.69 7.80 -12.19 -0.10 10.60 16 6 O -0.55 -11.94 16.45 5.36 0.09 -11.85 16 7 N -0.68 -12.99 3.80 -61.16 -0.23 -13.22 16 8 C 0.13 2.46 4.43 -4.04 -0.02 2.45 16 9 C 0.16 2.99 3.01 -67.60 -0.20 2.78 16 10 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 12 C -0.11 -1.70 5.88 -26.69 -0.16 -1.86 16 13 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 14 C 0.17 3.78 5.27 -3.71 -0.02 3.76 16 15 N -0.59 -13.00 2.97 -164.77 -0.49 -13.48 16 16 C -0.25 -6.15 6.97 -15.06 -0.10 -6.26 16 17 H 0.07 1.73 5.85 -52.49 -0.31 1.42 16 18 C 0.01 0.31 4.97 -17.43 -0.09 0.22 16 19 N -0.90 -23.35 11.23 55.49 0.62 -22.73 16 20 Si 0.89 20.89 29.58 -169.99 -5.03 15.86 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.14 -2.30 9.24 -39.02 -0.36 -2.66 16 25 C 0.13 2.03 6.78 -82.63 -0.56 1.47 16 26 C -0.10 -1.34 10.16 36.00 0.37 -0.98 16 27 N -0.48 -7.60 10.16 -5.79 -0.06 -7.66 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.14 2.13 7.74 -52.48 -0.41 1.72 16 32 H 0.42 8.12 5.54 -40.82 -0.23 7.89 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.40 7.42 -51.93 -0.39 1.02 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 2.09 6.19 -51.93 -0.32 1.77 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.15 2.45 6.54 -52.48 -0.34 2.11 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -28.36 373.22 -9.65 -38.02 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.46 Total: 8.68 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.72 Total: 0.76 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.16 Total: -57.09 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.36 -9.65 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024463021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.928 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds