Wall clock time and date at job start Tue Mar 31 2020 11:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38171 * 119.55131 * 2 1 4 4 C 1.39797 * 118.99390 * 180.02562 * 3 2 1 5 5 C 1.48152 * 120.91744 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00567 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00004 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00039 * 179.72326 * 7 5 4 9 9 H 1.08998 * 109.46960 * 35.28015 * 8 7 5 10 10 C 1.53002 * 109.47197 * 275.27581 * 8 7 5 11 11 C 1.53003 * 109.46902 * 155.27606 * 8 7 5 12 12 H 1.08999 * 109.49896 * 305.06476 * 11 8 7 13 13 C 1.53042 * 109.49696 * 184.99951 * 11 8 7 14 14 C 1.53041 * 109.53856 * 178.68148 * 13 11 8 15 15 C 1.53199 * 109.30817 * 61.36675 * 14 13 11 16 16 N 1.46919 * 108.77726 * 305.36086 * 15 14 13 17 17 C 1.36934 * 120.63506 * 233.58724 * 16 15 14 18 18 H 1.07998 * 120.00293 * 151.83629 * 17 16 15 19 19 C 1.38819 * 119.99950 * 331.83986 * 17 16 15 20 20 N 1.31617 * 119.99613 * 343.06945 * 19 17 16 21 21 Si 1.86797 * 119.99855 * 163.07486 * 19 17 16 22 22 H 1.48499 * 109.47259 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46927 * 120.00261 * 21 19 17 24 24 H 1.48504 * 109.46757 * 239.99536 * 21 19 17 25 25 C 1.46930 * 118.73525 * 53.61296 * 16 15 14 26 26 C 1.39834 * 118.15824 * 0.25406 * 4 3 2 27 27 C 1.38129 * 119.00347 * 359.48212 * 26 4 3 28 28 N 1.31792 * 119.54926 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47454 * 89.99139 * 1 2 3 30 30 H 1.08997 * 109.47634 * 210.00012 * 1 2 3 31 31 H 1.09002 * 109.46706 * 329.99658 * 1 2 3 32 32 H 1.07996 * 120.50304 * 0.02845 * 3 2 1 33 33 H 0.97006 * 119.99510 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46826 * 299.99818 * 10 8 7 35 35 H 1.08988 * 109.47007 * 60.00105 * 10 8 7 36 36 H 1.09002 * 109.47018 * 180.02562 * 10 8 7 37 37 H 1.08996 * 109.46400 * 298.70512 * 13 11 8 38 38 H 1.08998 * 109.46057 * 58.67669 * 13 11 8 39 39 H 1.08997 * 109.49918 * 181.31581 * 14 13 11 40 40 H 1.08996 * 109.49892 * 301.38717 * 14 13 11 41 41 H 1.08997 * 109.58399 * 65.15842 * 15 14 13 42 42 H 1.09004 * 109.58394 * 185.57756 * 15 14 13 43 43 H 0.97001 * 119.99544 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58566 * 186.60396 * 25 16 15 45 45 H 1.08998 * 109.58659 * 66.17642 * 25 16 15 46 46 H 1.08003 * 120.49610 * 179.72040 * 26 4 3 47 47 H 1.07992 * 119.55215 * 180.27265 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.7798 3.5196 -0.0007 7 7 5.7073 2.4172 -0.0022 8 6 6.4722 3.6666 -0.0089 9 1 5.9469 4.4174 0.5815 10 6 6.6241 4.1639 -1.4478 11 6 7.8565 3.4203 0.5944 12 1 7.7483 2.9815 1.5863 13 6 8.6101 4.7479 0.7026 14 6 9.9823 4.5074 1.3362 15 6 10.7935 3.5622 0.4443 16 7 10.0114 2.3395 0.2164 17 6 10.5472 1.1083 0.4852 18 1 9.9020 0.2868 0.7593 19 6 11.9197 0.9162 0.4054 20 7 12.6698 1.7870 -0.2357 21 14 12.7017 -0.5784 1.2079 22 1 11.6490 -1.3971 1.8612 23 1 13.3913 -1.3913 0.1740 24 1 13.6866 -0.1346 2.2268 25 6 8.6437 2.4629 -0.3059 26 6 4.2343 -0.0508 -0.0065 27 6 3.4740 -1.2041 -0.0007 28 7 2.1570 -1.1465 0.0005 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6494 2.1378 0.0005 33 1 6.1705 1.5649 -0.0022 34 1 7.1494 3.4132 -2.0381 35 1 5.6380 4.3394 -1.8776 36 1 7.1936 5.0933 -1.4528 37 1 8.7392 5.1744 -0.2921 38 1 8.0402 5.4395 1.3230 39 1 10.5091 5.4565 1.4344 40 1 9.8545 4.0586 2.3212 41 1 10.9997 4.0473 -0.5098 42 1 11.7317 3.3091 0.9382 43 1 13.6289 1.6526 -0.2918 44 1 8.1633 1.4845 -0.3070 45 1 8.6745 2.8583 -1.3212 46 1 5.3129 -0.1054 -0.0117 47 1 3.9652 -2.1658 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025565671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:30 Heat of formation + Delta-G solvation = -10.337828 kcal Electronic energy + Delta-G solvation = -26725.002623 eV Core-core repulsion = 23099.927372 eV Total energy + Delta-G solvation = -3625.075251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78706 -40.60503 -39.40072 -36.74247 -34.90380 -34.16623 -33.43246 -32.34652 -32.14237 -29.50551 -28.58588 -27.21479 -26.25773 -24.68619 -23.93356 -23.73914 -22.15560 -21.25786 -20.18852 -18.98133 -18.52826 -17.75229 -16.94311 -16.68100 -16.64927 -16.33496 -16.04367 -15.87471 -15.59181 -15.27801 -15.08190 -14.91031 -14.69913 -14.27420 -14.08705 -13.94471 -13.72698 -13.33884 -13.28552 -13.09785 -13.04521 -12.79612 -12.70910 -12.69594 -12.25276 -12.06076 -11.93473 -11.71840 -11.53078 -11.42043 -11.18957 -11.05302 -10.98985 -10.54424 -10.51527 -10.16821 -9.99426 -8.63708 -7.85172 -5.30218 -0.37498 0.04221 1.46717 1.49790 1.58909 1.77175 1.97191 2.52170 2.77341 3.30053 3.31573 3.43175 3.59021 3.71764 3.91174 3.92239 3.97785 4.01477 4.04853 4.34565 4.38233 4.41541 4.46989 4.57576 4.65128 4.69712 4.71443 4.78793 4.84952 4.87669 4.93159 4.95315 5.01369 5.06132 5.14186 5.17085 5.19811 5.29245 5.35137 5.42565 5.49190 5.59422 5.61754 5.69537 5.80574 6.38157 6.41733 6.88766 7.02187 7.17167 7.88995 8.40649 9.21032 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.003303 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.435882 B = 8474.916920 C =10076.207518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.116 3.884 3 C -0.126 4.126 4 C -0.096 4.096 5 C 0.559 3.441 6 O -0.567 6.567 7 N -0.705 5.705 8 C 0.158 3.842 9 H 0.083 0.917 10 C -0.160 4.160 11 C -0.098 4.098 12 H 0.067 0.933 13 C -0.098 4.098 14 C -0.131 4.131 15 C 0.174 3.826 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.071 0.929 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.150 3.850 26 C -0.146 4.146 27 C 0.100 3.900 28 N -0.489 5.489 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.048 0.952 41 H -0.004 1.004 42 H 0.049 0.951 43 H 0.248 0.752 44 H 0.054 0.946 45 H 0.024 0.976 46 H 0.158 0.842 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 -0.466 0.776 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.021 4.021 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.346 3.654 6 O -0.446 6.446 7 N -0.356 5.356 8 C 0.054 3.946 9 H 0.102 0.898 10 C -0.218 4.218 11 C -0.118 4.118 12 H 0.086 0.914 13 C -0.136 4.136 14 C -0.170 4.170 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.388 4.388 18 H 0.088 0.912 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.222 1.222 24 H -0.222 1.222 25 C 0.025 3.975 26 C -0.166 4.166 27 C -0.056 4.056 28 N -0.200 5.200 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.247 0.753 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.014 0.986 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.175 0.825 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.563 -0.485 0.756 20.583 hybrid contribution 1.892 -0.261 0.174 1.917 sum -18.672 -0.746 0.929 18.710 Atomic orbital electron populations 1.20822 0.86255 1.04589 1.04279 1.21761 0.98760 0.87316 0.94295 1.22228 0.93182 1.00583 0.98652 1.20410 0.94864 0.93422 1.02041 1.18411 0.82509 0.88550 0.75930 1.90735 1.70522 1.31971 1.51420 1.46060 1.05406 1.10889 1.73263 1.20935 0.90668 0.85599 0.97415 0.89845 1.22213 1.01631 1.02250 0.95724 1.21746 0.92660 0.97816 0.99610 0.91441 1.21413 0.95198 0.95756 1.01187 1.22014 0.96865 0.99152 0.99012 1.20612 0.94150 0.85577 0.94856 1.44280 1.11861 1.02193 1.74831 1.19555 0.90960 0.89490 1.38794 0.91158 1.25762 0.98173 1.00614 1.00109 1.70193 1.04703 1.39086 1.44161 0.85284 0.78382 0.79569 0.77683 1.18760 1.22162 1.22158 1.21133 0.85004 0.96993 0.94413 1.22589 1.02719 0.92065 0.99253 1.23223 0.88849 0.99585 0.93990 1.67489 1.11062 1.29884 1.11596 0.89091 0.89942 0.89010 0.83365 0.75313 0.92040 0.93016 0.90427 0.91731 0.90741 0.91337 0.93271 0.98576 0.93241 0.94284 0.92727 0.95818 0.82479 0.79354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.17 71.24 0.72 -0.55 16 2 C 0.12 2.23 6.78 42.55 0.29 2.52 16 3 C -0.13 -2.66 9.31 22.63 0.21 -2.45 16 4 C -0.10 -2.18 5.91 -19.88 -0.12 -2.30 16 5 C 0.56 14.80 7.76 86.88 0.67 15.47 16 6 O -0.57 -18.32 16.11 -3.74 -0.06 -18.38 16 7 N -0.70 -17.18 4.97 -445.11 -2.21 -19.40 16 8 C 0.16 4.13 2.35 44.99 0.11 4.24 16 9 H 0.08 2.27 7.58 -2.39 -0.02 2.26 16 10 C -0.16 -4.06 8.76 71.98 0.63 -3.43 16 11 C -0.10 -2.91 2.27 -10.71 -0.02 -2.94 16 12 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.10 -2.87 4.89 30.62 0.15 -2.72 16 14 C -0.13 -4.66 6.08 30.67 0.19 -4.47 16 15 C 0.17 8.08 5.30 86.37 0.46 8.54 16 16 N -0.61 -28.69 2.99 -699.09 -2.09 -30.78 16 17 C -0.26 -13.44 9.58 84.04 0.81 -12.63 16 18 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 19 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 20 N -0.94 -54.23 11.20 21.65 0.24 -53.99 16 21 Si 0.96 43.55 29.59 68.60 2.03 45.58 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 C 0.15 5.50 5.26 86.36 0.45 5.95 16 26 C -0.15 -2.72 9.62 22.63 0.22 -2.50 16 27 C 0.10 1.79 11.17 84.67 0.95 2.74 16 28 N -0.49 -10.19 10.25 -184.05 -1.89 -12.08 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.15 2.98 7.74 -2.91 -0.02 2.96 16 33 H 0.41 8.88 5.42 -92.70 -0.50 8.37 16 34 H 0.06 1.62 6.23 -2.39 -0.01 1.61 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.85 6.59 -2.39 -0.02 1.83 16 37 H 0.06 1.87 6.63 -2.39 -0.02 1.85 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.05 2.65 6.06 -2.38 -0.01 2.63 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.05 1.87 6.75 -2.39 -0.02 1.86 16 45 H 0.02 0.90 6.06 -2.39 -0.01 0.89 16 46 H 0.16 2.33 6.54 -2.91 -0.02 2.31 16 47 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -67.34 369.62 2.62 -64.72 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.47 Total: 21.23 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.13 Total: 3.10 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.95 Total: -116.24 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.06 Total: -18.38 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.34 2.62 -64.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025565671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.378 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds