Wall clock time and date at job start Tue Mar 31 2020 11:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38141 * 119.55054 * 2 1 4 4 C 1.39823 * 119.00205 * 179.97438 * 3 2 1 5 5 C 1.48149 * 120.92507 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99969 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99771 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 204.99940 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 N 1.46496 * 109.47487 * 179.97438 * 11 10 9 13 13 C 1.36933 * 120.00258 * 274.99944 * 12 11 10 14 14 H 1.07997 * 120.00195 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00104 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00032 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46973 * 89.99736 * 17 15 13 19 19 H 1.48492 * 109.47032 * 209.99634 * 17 15 13 20 20 H 1.48491 * 109.47161 * 330.00041 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 11 10 23 23 C 1.39822 * 118.14909 * 0.25345 * 4 3 2 24 24 C 1.38149 * 119.00465 * 359.52365 * 23 4 3 25 25 C 1.50699 * 119.55216 * 180.22829 * 24 23 4 26 26 N 1.31813 * 120.89519 * 0.48823 * 24 23 4 27 27 H 1.09007 * 109.47152 * 89.99710 * 1 2 3 28 28 H 1.09003 * 109.47296 * 209.99937 * 1 2 3 29 29 H 1.09001 * 109.47375 * 329.99795 * 1 2 3 30 30 H 1.07996 * 120.50563 * 0.02562 * 3 2 1 31 31 H 0.97006 * 119.99662 * 0.02562 * 7 5 4 32 32 H 1.08992 * 109.47397 * 325.00275 * 8 7 5 33 33 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 35 35 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 37 37 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 38 38 H 0.97007 * 119.99693 * 95.00333 * 12 11 10 39 39 H 0.97001 * 120.00297 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 11 10 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 11 10 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 11 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 11 44 44 H 1.08004 * 120.49245 * 179.72701 * 23 4 3 45 45 H 1.08995 * 109.47363 * 270.25385 * 25 24 23 46 46 H 1.09002 * 109.47187 * 30.25790 * 25 24 23 47 47 H 1.09000 * 109.46827 * 150.25634 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2017 0.0000 4 6 3.5865 1.1883 0.0005 5 6 4.3600 2.4519 0.0000 6 8 3.7797 3.5194 -0.0005 7 7 5.7073 2.4172 0.0011 8 6 6.4721 3.6667 0.0011 9 6 7.8539 3.4187 -0.6073 10 6 8.6529 4.7235 -0.6068 11 6 8.8109 5.2242 0.8303 12 7 9.5765 6.4732 0.8310 13 6 10.9454 6.4372 0.8324 14 1 11.4606 5.4881 0.8326 15 6 11.6708 7.6207 0.8325 16 7 12.9865 7.5861 0.8333 17 14 10.7796 9.2624 0.8314 18 1 10.5426 9.6979 2.2312 19 1 11.6096 10.2756 0.1317 20 1 9.4784 9.1188 0.1306 21 6 7.4291 5.4720 1.4388 22 6 6.6300 4.1673 1.4382 23 6 4.2343 -0.0508 -0.0044 24 6 3.4739 -1.2042 0.0005 25 6 4.1594 -2.5463 0.0005 26 7 2.1570 -1.1467 0.0000 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6492 2.1375 0.0004 31 1 6.1705 1.5649 0.0018 32 1 5.9444 4.4158 -0.5890 33 1 8.3817 2.6696 -0.0172 34 1 7.7414 3.0617 -1.6311 35 1 9.6372 4.5471 -1.0406 36 1 8.1253 5.4730 -1.1967 37 1 9.3385 4.4747 1.4202 38 1 9.1137 7.3257 0.8305 39 1 13.4935 8.4131 0.8338 40 1 6.9014 6.2215 0.8489 41 1 7.5417 5.8283 2.4628 42 1 5.6459 4.3438 1.8721 43 1 7.1578 3.4178 2.0281 44 1 5.3129 -0.1052 -0.0086 45 1 4.3250 -2.8697 -1.0271 46 1 5.1170 -2.4652 0.5147 47 1 3.5318 -3.2747 0.5140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026500047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:15 Heat of formation + Delta-G solvation = -9.632212 kcal Electronic energy + Delta-G solvation = -25859.509927 eV Core-core repulsion = 22234.465274 eV Total energy + Delta-G solvation = -3625.044653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10905 -39.77055 -38.06789 -35.15269 -34.20665 -33.57390 -32.74306 -30.95635 -30.53740 -29.52411 -27.97089 -27.07341 -24.70556 -23.13164 -22.47215 -22.28120 -21.00433 -20.54416 -19.62585 -17.90712 -17.48284 -17.22386 -16.07380 -15.90140 -15.50842 -15.25860 -14.90372 -14.83970 -14.34006 -14.02474 -13.91366 -13.68885 -13.57353 -13.40164 -12.96321 -12.83370 -12.70936 -12.54389 -12.42550 -12.26391 -12.08833 -11.97585 -11.86318 -11.00703 -10.96911 -10.87681 -10.78013 -10.44312 -10.38847 -10.21834 -10.16429 -9.85883 -9.75410 -9.57938 -9.22799 -9.15892 -8.90406 -7.27188 -5.77617 -3.12897 0.34765 0.63763 2.58879 2.80835 3.38051 3.40756 3.41598 3.45822 3.71313 4.11056 4.24020 4.53534 4.59153 4.61098 4.77398 4.90320 4.94122 5.02914 5.07001 5.08822 5.14534 5.20056 5.21125 5.42748 5.45355 5.49254 5.51274 5.56497 5.61051 5.65779 5.66580 5.72389 5.74697 5.89877 6.08317 6.14519 6.18240 6.21787 6.24930 6.43298 6.44128 6.56789 6.84483 6.98855 7.23504 7.53578 7.90985 7.98824 8.41768 9.20546 9.93480 10.13552 11.40685 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.002272 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.491009 B =12323.046882 C =12971.610315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.123 4.123 4 C -0.077 4.077 5 C 0.556 3.444 6 O -0.527 6.527 7 N -0.715 5.715 8 C 0.144 3.856 9 C -0.122 4.122 10 C -0.132 4.132 11 C 0.182 3.818 12 N -0.749 5.749 13 C -0.242 4.242 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.150 4.150 24 C 0.130 3.870 25 C -0.105 4.105 26 N -0.473 5.473 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.139 0.861 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.514 -19.795 -2.204 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.144 4.144 4 C -0.088 4.088 5 C 0.342 3.658 6 O -0.404 6.404 7 N -0.366 5.366 8 C 0.041 3.959 9 C -0.161 4.161 10 C -0.173 4.173 11 C 0.072 3.928 12 N -0.391 5.391 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.193 4.193 16 N -0.582 5.582 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.008 4.008 25 C -0.162 4.162 26 N -0.184 5.184 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.157 0.843 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.113 -19.823 -2.193 30.528 hybrid contribution 0.311 1.656 -0.082 1.687 sum -22.802 -18.166 -2.275 29.242 Atomic orbital electron populations 1.20746 0.88169 1.03818 1.03419 1.21291 0.97293 0.87633 0.94595 1.22107 0.93289 1.00125 0.98871 1.20435 0.94560 0.93526 1.00277 1.18162 0.82461 0.88309 0.76879 1.90792 1.69844 1.30684 1.49046 1.46086 1.05652 1.10499 1.74346 1.21199 0.92007 0.85145 0.97579 1.21818 0.93898 1.00047 1.00325 1.22190 0.99744 0.94558 1.00788 1.20214 0.90078 0.89477 0.93012 1.42803 1.03883 1.02205 1.90239 1.19069 0.80524 0.94731 1.42873 0.89230 1.24680 0.95212 0.97270 1.02103 1.69700 1.04287 1.26622 1.57627 0.86551 0.79006 0.85210 0.77786 1.21112 1.21805 1.20285 1.21805 0.96481 0.96369 1.01703 1.21834 1.00367 0.98076 0.95739 1.22134 1.01309 0.92063 1.01522 1.21243 0.89184 0.95749 0.94575 1.20751 0.99951 0.92104 1.03423 1.67241 1.09666 1.29603 1.11919 0.90101 0.90208 0.90319 0.83459 0.76633 0.89221 0.91530 0.91972 0.90955 0.92466 0.92657 0.80656 0.93094 0.92127 0.91419 0.91889 0.91718 0.84309 0.90098 0.90341 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.17 36.01 0.37 -0.27 16 2 C 0.13 1.18 6.78 -82.63 -0.56 0.62 16 3 C -0.12 -1.22 9.31 -39.02 -0.36 -1.58 16 4 C -0.08 -0.78 5.91 -104.64 -0.62 -1.40 16 5 C 0.56 6.71 7.76 -12.19 -0.09 6.62 16 6 O -0.53 -8.24 16.11 5.36 0.09 -8.15 16 7 N -0.72 -7.32 5.03 -54.66 -0.28 -7.59 16 8 C 0.14 1.77 2.45 -67.93 -0.17 1.60 16 9 C -0.12 -1.48 5.39 -26.73 -0.14 -1.62 16 10 C -0.13 -2.14 5.50 -26.73 -0.15 -2.28 16 11 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 12 N -0.75 -17.39 4.93 -53.43 -0.26 -17.66 16 13 C -0.24 -6.71 10.41 -15.06 -0.16 -6.86 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 16 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 17 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 21 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 22 C -0.12 -1.58 5.49 -26.73 -0.15 -1.73 16 23 C -0.15 -1.21 9.24 -39.02 -0.36 -1.57 16 24 C 0.13 1.09 6.78 -82.63 -0.56 0.53 16 25 C -0.10 -0.56 10.16 36.01 0.37 -0.19 16 26 N -0.47 -4.64 10.16 -5.79 -0.06 -4.70 16 27 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.15 1.39 7.74 -52.49 -0.41 0.98 16 31 H 0.40 2.93 6.75 -40.82 -0.28 2.66 16 32 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.14 0.73 6.54 -52.48 -0.34 0.38 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -34.01 380.26 -9.31 -43.32 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.57 Total: 7.12 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.02 Total: -7.09 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.18 Total: -58.35 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.01 -9.31 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026500047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.685 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds