Wall clock time and date at job start Tue Mar 31 2020 11:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38141 * 119.55054 * 2 1 4 4 C 1.39823 * 119.00205 * 179.97438 * 3 2 1 5 5 C 1.48149 * 120.92507 * 179.97438 * 4 3 2 6 6 O 1.21510 * 119.99969 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99771 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 204.99940 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 N 1.46496 * 109.47487 * 179.97438 * 11 10 9 13 13 C 1.36933 * 120.00258 * 274.99944 * 12 11 10 14 14 H 1.07997 * 120.00195 * 0.02562 * 13 12 11 15 15 C 1.38814 * 120.00104 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00032 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46973 * 89.99736 * 17 15 13 19 19 H 1.48492 * 109.47032 * 209.99634 * 17 15 13 20 20 H 1.48491 * 109.47161 * 330.00041 * 17 15 13 21 21 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 11 10 23 23 C 1.39822 * 118.14909 * 0.25345 * 4 3 2 24 24 C 1.38149 * 119.00465 * 359.52365 * 23 4 3 25 25 C 1.50699 * 119.55216 * 180.22829 * 24 23 4 26 26 N 1.31813 * 120.89519 * 0.48823 * 24 23 4 27 27 H 1.09007 * 109.47152 * 89.99710 * 1 2 3 28 28 H 1.09003 * 109.47296 * 209.99937 * 1 2 3 29 29 H 1.09001 * 109.47375 * 329.99795 * 1 2 3 30 30 H 1.07996 * 120.50563 * 0.02562 * 3 2 1 31 31 H 0.97006 * 119.99662 * 0.02562 * 7 5 4 32 32 H 1.08992 * 109.47397 * 325.00275 * 8 7 5 33 33 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 34 34 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 35 35 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 37 37 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 38 38 H 0.97007 * 119.99693 * 95.00333 * 12 11 10 39 39 H 0.97001 * 120.00297 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.46935 * 299.99411 * 21 11 10 41 41 H 1.09001 * 109.46812 * 179.97438 * 21 11 10 42 42 H 1.08993 * 109.47194 * 179.97438 * 22 21 11 43 43 H 1.09002 * 109.46695 * 59.99734 * 22 21 11 44 44 H 1.08004 * 120.49245 * 179.72701 * 23 4 3 45 45 H 1.08995 * 109.47363 * 270.25385 * 25 24 23 46 46 H 1.09002 * 109.47187 * 30.25790 * 25 24 23 47 47 H 1.09000 * 109.46827 * 150.25634 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2017 0.0000 4 6 3.5865 1.1883 0.0005 5 6 4.3600 2.4519 0.0000 6 8 3.7797 3.5194 -0.0005 7 7 5.7073 2.4172 0.0011 8 6 6.4721 3.6667 0.0011 9 6 7.8539 3.4187 -0.6073 10 6 8.6529 4.7235 -0.6068 11 6 8.8109 5.2242 0.8303 12 7 9.5765 6.4732 0.8310 13 6 10.9454 6.4372 0.8324 14 1 11.4606 5.4881 0.8326 15 6 11.6708 7.6207 0.8325 16 7 12.9865 7.5861 0.8333 17 14 10.7796 9.2624 0.8314 18 1 10.5426 9.6979 2.2312 19 1 11.6096 10.2756 0.1317 20 1 9.4784 9.1188 0.1306 21 6 7.4291 5.4720 1.4388 22 6 6.6300 4.1673 1.4382 23 6 4.2343 -0.0508 -0.0044 24 6 3.4739 -1.2042 0.0005 25 6 4.1594 -2.5463 0.0005 26 7 2.1570 -1.1467 0.0000 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6492 2.1375 0.0004 31 1 6.1705 1.5649 0.0018 32 1 5.9444 4.4158 -0.5890 33 1 8.3817 2.6696 -0.0172 34 1 7.7414 3.0617 -1.6311 35 1 9.6372 4.5471 -1.0406 36 1 8.1253 5.4730 -1.1967 37 1 9.3385 4.4747 1.4202 38 1 9.1137 7.3257 0.8305 39 1 13.4935 8.4131 0.8338 40 1 6.9014 6.2215 0.8489 41 1 7.5417 5.8283 2.4628 42 1 5.6459 4.3438 1.8721 43 1 7.1578 3.4178 2.0281 44 1 5.3129 -0.1052 -0.0086 45 1 4.3250 -2.8697 -1.0271 46 1 5.1170 -2.4652 0.5147 47 1 3.5318 -3.2747 0.5140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026500047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:14 Heat of formation + Delta-G solvation = -32.172492 kcal Electronic energy + Delta-G solvation = -25860.487347 eV Core-core repulsion = 22234.465274 eV Total energy + Delta-G solvation = -3626.022073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86370 -40.68402 -39.28696 -36.55182 -35.04889 -34.57066 -33.91632 -32.72080 -31.72561 -30.01426 -29.36912 -27.66830 -25.86391 -24.66503 -23.66583 -22.92550 -22.31168 -21.53082 -20.89442 -19.56713 -18.62467 -18.00991 -16.95742 -16.77115 -16.64380 -16.40626 -16.15705 -15.76154 -15.59460 -15.09420 -14.97889 -14.77117 -14.53350 -14.37295 -14.17260 -14.07305 -13.81226 -13.46076 -13.26029 -13.12439 -12.94627 -12.91351 -12.81278 -12.69545 -12.46118 -12.16855 -12.06296 -11.97957 -11.80059 -11.70287 -11.38795 -11.12237 -10.95527 -10.90325 -10.54778 -10.13843 -9.83046 -9.28804 -8.00926 -5.33236 -0.38462 0.00655 1.38485 1.40350 1.47724 1.74513 1.91673 2.49159 2.71434 3.18173 3.30104 3.37058 3.57666 3.63175 3.73723 3.85279 3.91682 3.98560 4.17802 4.29153 4.34277 4.35732 4.45196 4.51218 4.55393 4.57051 4.61831 4.73426 4.74738 4.81401 4.83251 4.91814 4.96616 5.03507 5.07872 5.10565 5.15344 5.20381 5.24288 5.26493 5.38388 5.49597 5.60274 5.63534 5.80148 6.23854 6.40222 6.90196 7.04686 7.09849 7.87573 8.05368 9.20469 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.002272 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.491009 B =12323.046882 C =12971.610315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.138 4.138 4 C -0.091 4.091 5 C 0.558 3.442 6 O -0.569 6.569 7 N -0.700 5.700 8 C 0.151 3.849 9 C -0.109 4.109 10 C -0.126 4.126 11 C 0.174 3.826 12 N -0.755 5.755 13 C -0.222 4.222 14 H 0.061 0.939 15 C -0.067 4.067 16 N -0.984 5.984 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.255 1.255 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.143 4.143 24 C 0.122 3.878 25 C -0.103 4.103 26 N -0.492 5.492 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.416 0.584 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.170 0.830 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.141 -21.377 -2.343 32.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.158 4.158 4 C -0.102 4.102 5 C 0.345 3.655 6 O -0.448 6.448 7 N -0.351 5.351 8 C 0.047 3.953 9 C -0.148 4.148 10 C -0.166 4.166 11 C 0.067 3.933 12 N -0.398 5.398 13 C -0.353 4.353 14 H 0.079 0.921 15 C -0.258 4.258 16 N -0.635 5.635 17 Si 0.779 3.221 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.179 1.179 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.163 4.163 24 C -0.016 4.016 25 C -0.160 4.160 26 N -0.204 5.204 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.254 0.746 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.196 0.804 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.187 0.813 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.786 -21.472 -2.336 32.876 hybrid contribution 0.809 2.005 -0.032 2.163 sum -23.977 -19.467 -2.368 30.975 Atomic orbital electron populations 1.20817 0.86454 1.04512 1.04219 1.21665 0.98570 0.87216 0.94103 1.22191 0.93569 1.00382 0.99707 1.20374 0.94628 0.93428 1.01790 1.18434 0.82771 0.88389 0.75933 1.90773 1.70682 1.32292 1.51088 1.45847 1.05093 1.10636 1.73511 1.20958 0.91991 0.85667 0.96686 1.21680 0.93069 0.98013 1.01989 1.21996 0.99295 0.96703 0.98618 1.20479 0.90884 0.87407 0.94534 1.42877 1.02467 1.04158 1.90251 1.19040 0.82512 0.93443 1.40343 0.92124 1.25466 0.95944 1.01215 1.03199 1.69872 1.06114 1.27339 1.60172 0.85457 0.78482 0.80175 0.77955 1.20649 1.22491 1.17948 1.21686 0.94873 0.97836 1.01120 1.21746 0.99778 0.97078 0.96551 1.22409 1.02780 0.90920 1.00167 1.21807 0.88973 0.97191 0.93599 1.20851 1.00537 0.90299 1.04358 1.67329 1.10654 1.29878 1.12496 0.89162 0.89914 0.89203 0.83878 0.74588 0.91005 0.89675 0.90033 0.93172 0.92977 0.93287 0.80442 0.93502 0.92304 0.91723 0.92219 0.90246 0.81306 0.89040 0.88226 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.17 71.24 0.72 -0.42 16 2 C 0.12 2.10 6.78 42.54 0.29 2.39 16 3 C -0.14 -2.63 9.31 22.63 0.21 -2.42 16 4 C -0.09 -1.72 5.91 -19.88 -0.12 -1.84 16 5 C 0.56 12.60 7.76 86.88 0.67 13.28 16 6 O -0.57 -17.50 16.11 -3.75 -0.06 -17.56 16 7 N -0.70 -12.38 5.03 -445.13 -2.24 -14.62 16 8 C 0.15 3.35 2.45 44.99 0.11 3.46 16 9 C -0.11 -2.33 5.39 30.59 0.16 -2.17 16 10 C -0.13 -3.91 5.50 30.59 0.17 -3.74 16 11 C 0.17 6.21 2.77 44.99 0.12 6.34 16 12 N -0.76 -34.63 4.93 -322.94 -1.59 -36.22 16 13 C -0.22 -12.46 10.41 84.03 0.87 -11.58 16 14 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.98 -62.97 13.97 21.65 0.30 -62.66 16 17 Si 0.95 45.92 27.74 68.60 1.90 47.83 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 20 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 21 C -0.12 -3.43 5.39 30.60 0.16 -3.27 16 22 C -0.11 -2.69 5.49 30.59 0.17 -2.53 16 23 C -0.14 -1.91 9.24 22.63 0.21 -1.70 16 24 C 0.12 1.76 6.78 42.54 0.29 2.05 16 25 C -0.10 -0.80 10.16 71.24 0.72 -0.08 16 26 N -0.49 -8.93 10.16 -172.23 -1.75 -10.68 16 27 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.76 8.08 -2.39 -0.02 0.75 16 30 H 0.14 2.74 7.74 -2.91 -0.02 2.72 16 31 H 0.42 4.48 6.75 -92.70 -0.63 3.85 16 32 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.36 16.27 5.66 -92.70 -0.52 15.74 16 39 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.17 1.06 6.54 -2.91 -0.02 1.04 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.10 0.35 8.08 -2.39 -0.02 0.33 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -75.41 380.26 1.58 -73.83 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.23 Total: 25.79 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.24 Total: -5.70 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.28 Total: -124.19 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.83 kcal Total: -75.41 1.58 -73.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026500047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.661 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds