Wall clock time and date at job start Tue Mar 31 2020 11:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38225 * 119.62469 * 2 1 4 4 C 1.38622 * 119.16279 * 179.97438 * 3 2 1 5 5 C 1.38670 * 118.42353 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.42075 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47634 * 89.99557 * 6 5 4 8 8 O 1.21286 * 119.99672 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00429 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63044 * 359.72977 * 9 7 6 11 11 C 1.52770 * 109.00749 * 233.58096 * 10 9 7 12 12 C 1.53042 * 109.37820 * 305.58666 * 11 10 9 13 13 C 1.53036 * 109.54247 * 61.24076 * 12 11 10 14 14 H 1.09001 * 109.49558 * 58.58316 * 13 12 11 15 15 N 1.46498 * 109.52509 * 178.66291 * 13 12 11 16 16 C 1.46504 * 119.99687 * 59.85579 * 15 13 12 17 17 C 1.36931 * 120.00379 * 239.85459 * 15 13 12 18 18 H 1.08003 * 120.00148 * 22.06945 * 17 15 13 19 19 C 1.38812 * 120.00471 * 202.06926 * 17 15 13 20 20 N 1.31621 * 119.99539 * 12.40217 * 19 17 15 21 21 Si 1.86794 * 120.00304 * 192.39904 * 19 17 15 22 22 H 1.48491 * 109.47376 * 90.00220 * 21 19 17 23 23 H 1.48500 * 109.47050 * 210.00006 * 21 19 17 24 24 H 1.48497 * 109.47199 * 329.99871 * 21 19 17 25 25 C 1.46923 * 120.63436 * 180.02562 * 9 7 6 26 26 C 1.38182 * 119.16212 * 0.27175 * 5 4 3 27 27 N 1.31864 * 119.61469 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47331 * 89.99354 * 1 2 3 29 29 H 1.09000 * 109.47451 * 210.00321 * 1 2 3 30 30 H 1.08999 * 109.46427 * 330.00122 * 1 2 3 31 31 H 1.08003 * 120.41769 * 359.95841 * 3 2 1 32 32 H 1.08003 * 120.78967 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46895 * 210.00090 * 6 5 4 34 34 H 1.09000 * 109.47170 * 329.99542 * 6 5 4 35 35 H 1.09002 * 109.58472 * 353.41070 * 10 9 7 36 36 H 1.08993 * 109.59282 * 113.83669 * 10 9 7 37 37 H 1.08998 * 109.56061 * 185.54825 * 11 10 9 38 38 H 1.09003 * 109.35877 * 65.49338 * 11 10 9 39 39 H 1.09000 * 109.45616 * 301.21455 * 12 11 10 40 40 H 1.09001 * 109.45165 * 181.26451 * 12 11 10 41 41 H 1.08998 * 109.47144 * 94.30769 * 16 15 13 42 42 H 1.09002 * 109.46837 * 214.30794 * 16 15 13 43 43 H 1.09003 * 109.47192 * 334.30839 * 16 15 13 44 44 H 0.97000 * 119.99796 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.58892 * 246.15993 * 25 9 7 46 46 H 1.09007 * 109.58580 * 6.58480 * 25 9 7 47 47 H 1.08004 * 119.61853 * 179.70253 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1903 1.2016 0.0000 4 6 3.5764 1.1904 0.0005 5 6 4.2266 -0.0344 0.0005 6 6 5.7322 -0.0991 0.0017 7 6 6.2331 -0.1212 1.4228 8 8 5.4450 -0.0881 2.3441 9 7 7.5567 -0.1786 1.6700 10 6 8.5234 -0.2262 0.5646 11 6 9.4440 -1.4296 0.7602 12 6 10.0809 -1.3610 2.1501 13 6 8.9858 -1.4099 3.2180 14 1 8.4090 -2.3280 3.1058 15 7 9.5976 -1.3765 4.5487 16 6 10.4293 -0.2370 4.9440 17 6 9.3922 -2.4101 5.4230 18 1 9.1022 -3.3819 5.0516 19 6 9.5566 -2.2090 6.7865 20 7 9.6678 -0.9870 7.2627 21 14 9.6199 -3.6724 7.9456 22 1 11.0262 -4.1252 8.0949 23 1 9.0840 -3.2764 9.2727 24 1 8.7998 -4.7791 7.3909 25 6 8.0602 -0.2014 3.0501 26 6 3.4766 -1.1949 -0.0058 27 7 2.1586 -1.1464 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 1.6509 2.1373 -0.0007 32 1 4.1368 2.1137 0.0001 33 1 6.0574 -1.0037 -0.5123 34 1 6.1338 0.7747 -0.5115 35 1 7.9916 -0.3248 -0.3818 36 1 9.1173 0.6876 0.5588 37 1 10.2258 -1.4182 0.0007 38 1 8.8629 -2.3474 0.6712 39 1 10.6416 -0.4313 2.2471 40 1 10.7553 -2.2070 2.2825 41 1 9.8189 0.4897 5.4799 42 1 11.2351 -0.5827 5.5915 43 1 10.8527 0.2297 4.0545 44 1 9.7830 -0.8464 8.2156 45 1 8.6155 0.7147 3.2516 46 1 7.2229 -0.2835 3.7433 47 1 3.9754 -2.1529 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027686745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:14 Heat of formation + Delta-G solvation = 19.724182 kcal Electronic energy + Delta-G solvation = -26670.547262 eV Core-core repulsion = 23046.775598 eV Total energy + Delta-G solvation = -3623.771664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61798 -39.67677 -37.45984 -35.09826 -34.16555 -32.39265 -32.36367 -31.31479 -30.22718 -28.68069 -26.42845 -26.00337 -24.73821 -23.68981 -23.37633 -21.81495 -21.59534 -19.57173 -18.56401 -17.10818 -16.82590 -16.71603 -16.38905 -15.68433 -15.25646 -14.85803 -14.78060 -14.50578 -14.16698 -13.88769 -13.69007 -13.37704 -13.27932 -13.05888 -12.89417 -12.64190 -12.49611 -12.39469 -12.32324 -12.08846 -11.87397 -11.65120 -11.17289 -11.01224 -10.80340 -10.63838 -10.40767 -10.34222 -10.17665 -9.93393 -9.85241 -9.75746 -9.57980 -9.52290 -8.83027 -8.58332 -8.31936 -6.76491 -5.71806 -3.17749 0.98511 1.21874 2.80895 3.18130 3.40247 3.46302 3.47912 3.71144 4.18014 4.49340 4.53600 4.57716 4.69756 4.77626 4.85918 4.93517 5.09869 5.14540 5.23860 5.28484 5.37872 5.38953 5.43555 5.45074 5.52191 5.58059 5.65836 5.73762 5.84399 5.90219 5.98783 6.00982 6.11096 6.15368 6.22006 6.36598 6.48970 6.61845 6.67165 6.77113 6.92921 6.98003 7.38472 7.66271 7.72102 7.82090 7.91814 8.37631 8.42497 9.23950 9.86434 10.34554 11.33020 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003042 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.978452 B = 9201.642631 C =10231.225671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.120 3.880 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.119 4.119 6 C -0.097 4.097 7 C 0.510 3.490 8 O -0.533 6.533 9 N -0.607 5.607 10 C 0.107 3.893 11 C -0.132 4.132 12 C -0.134 4.134 13 C 0.169 3.831 14 H 0.064 0.936 15 N -0.592 5.592 16 C 0.162 3.838 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.906 3.094 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.098 3.902 26 C 0.119 3.881 27 N -0.484 5.484 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.028 0.972 42 H 0.044 0.956 43 H -0.001 1.001 44 H 0.253 0.747 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 5.251 -20.594 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.017 4.017 3 C -0.191 4.191 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.137 4.137 7 C 0.297 3.703 8 O -0.410 6.410 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.173 4.173 13 C 0.060 3.940 14 H 0.082 0.918 15 N -0.314 5.314 16 C 0.017 3.983 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.736 3.264 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.025 4.025 26 C -0.038 4.038 27 N -0.193 5.193 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.070 4.550 -19.860 22.302 hybrid contribution 0.777 0.174 0.800 1.129 sum -8.293 4.724 -19.060 21.316 Atomic orbital electron populations 1.20694 0.89003 1.03484 1.02813 1.21284 0.96982 0.88485 0.94955 1.21883 0.94716 0.99209 1.03331 1.21405 0.94411 0.97690 0.94961 1.20303 0.95357 0.94583 1.01917 1.20633 0.92060 1.05154 0.95875 1.20406 0.82197 0.76953 0.90757 1.90747 1.54628 1.49375 1.46236 1.48312 1.05070 1.72508 1.08230 1.21661 0.91528 0.99145 0.89277 1.21838 0.98703 0.97962 0.98560 1.22089 0.99537 1.02141 0.93563 1.20613 0.91430 0.95834 0.86165 0.91796 1.43946 1.54288 1.22094 1.11035 1.20795 0.94077 0.89400 0.93999 1.19235 1.42949 0.89301 0.87004 0.91344 1.25030 1.01306 0.96317 0.96942 1.70073 1.54095 1.18528 1.12464 0.86221 0.77683 0.81998 0.80453 1.21514 1.21727 1.20466 1.22536 0.99315 1.00170 0.80490 1.22562 0.89202 0.97851 0.94191 1.67516 1.09757 1.29350 1.12721 0.90589 0.90488 0.90814 0.84936 0.85044 0.87743 0.88017 0.90350 0.91497 0.91188 0.91720 0.92255 0.91691 0.95351 0.93684 0.98283 0.93723 0.92154 0.89124 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 36.01 0.37 -0.50 16 2 C 0.12 1.42 6.78 -82.58 -0.56 0.86 16 3 C -0.17 -1.82 9.74 -39.44 -0.38 -2.21 16 4 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 5 C -0.12 -1.43 4.39 -104.48 -0.46 -1.89 16 6 C -0.10 -0.99 4.20 -29.04 -0.12 -1.11 16 7 C 0.51 7.82 7.69 -10.99 -0.08 7.74 16 8 O -0.53 -10.86 15.45 5.55 0.09 -10.77 16 9 N -0.61 -9.08 2.98 -173.05 -0.52 -9.60 16 10 C 0.11 1.14 6.31 -3.93 -0.02 1.12 16 11 C -0.13 -1.53 6.07 -26.83 -0.16 -1.69 16 12 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 13 C 0.17 3.41 2.74 -67.83 -0.19 3.22 16 14 H 0.06 1.38 7.86 -51.93 -0.41 0.97 16 15 N -0.59 -14.69 2.82 -173.37 -0.49 -15.18 16 16 C 0.16 3.92 7.91 59.85 0.47 4.40 16 17 C -0.26 -7.07 9.60 -15.06 -0.14 -7.21 16 18 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 19 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 20 N -0.91 -26.67 10.63 55.49 0.59 -26.08 16 21 Si 0.91 22.22 29.57 -169.99 -5.03 17.19 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.10 1.89 5.79 -3.73 -0.02 1.87 16 26 C 0.12 1.54 10.86 -17.55 -0.19 1.35 16 27 N -0.48 -6.67 10.27 -9.47 -0.10 -6.76 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.10 0.82 7.63 -51.93 -0.40 0.43 16 34 H 0.10 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 42 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 43 H 0.00 -0.03 6.45 -51.93 -0.34 -0.36 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.06 1.17 7.51 -51.93 -0.39 0.78 16 46 H 0.09 2.10 7.01 -51.92 -0.36 1.74 16 47 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -34.39 374.26 -9.42 -43.81 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.49 Total: -0.88 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.11 Total: 2.63 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.51 Total: -57.62 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.39 -9.42 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.531 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds