Wall clock time and date at job start Tue Mar 31 2020 11:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38225 * 119.62469 * 2 1 4 4 C 1.38622 * 119.16279 * 179.97438 * 3 2 1 5 5 C 1.38670 * 118.42353 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.42075 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47634 * 89.99557 * 6 5 4 8 8 O 1.21286 * 119.99672 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00429 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63044 * 359.72977 * 9 7 6 11 11 C 1.52770 * 109.00749 * 233.58096 * 10 9 7 12 12 C 1.53042 * 109.37820 * 305.58666 * 11 10 9 13 13 C 1.53036 * 109.54247 * 61.24076 * 12 11 10 14 14 H 1.09001 * 109.49558 * 58.58316 * 13 12 11 15 15 N 1.46498 * 109.52509 * 178.66291 * 13 12 11 16 16 C 1.46504 * 119.99687 * 59.85579 * 15 13 12 17 17 C 1.36931 * 120.00379 * 239.85459 * 15 13 12 18 18 H 1.08003 * 120.00148 * 22.06945 * 17 15 13 19 19 C 1.38812 * 120.00471 * 202.06926 * 17 15 13 20 20 N 1.31621 * 119.99539 * 12.40217 * 19 17 15 21 21 Si 1.86794 * 120.00304 * 192.39904 * 19 17 15 22 22 H 1.48491 * 109.47376 * 90.00220 * 21 19 17 23 23 H 1.48500 * 109.47050 * 210.00006 * 21 19 17 24 24 H 1.48497 * 109.47199 * 329.99871 * 21 19 17 25 25 C 1.46923 * 120.63436 * 180.02562 * 9 7 6 26 26 C 1.38182 * 119.16212 * 0.27175 * 5 4 3 27 27 N 1.31864 * 119.61469 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47331 * 89.99354 * 1 2 3 29 29 H 1.09000 * 109.47451 * 210.00321 * 1 2 3 30 30 H 1.08999 * 109.46427 * 330.00122 * 1 2 3 31 31 H 1.08003 * 120.41769 * 359.95841 * 3 2 1 32 32 H 1.08003 * 120.78967 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46895 * 210.00090 * 6 5 4 34 34 H 1.09000 * 109.47170 * 329.99542 * 6 5 4 35 35 H 1.09002 * 109.58472 * 353.41070 * 10 9 7 36 36 H 1.08993 * 109.59282 * 113.83669 * 10 9 7 37 37 H 1.08998 * 109.56061 * 185.54825 * 11 10 9 38 38 H 1.09003 * 109.35877 * 65.49338 * 11 10 9 39 39 H 1.09000 * 109.45616 * 301.21455 * 12 11 10 40 40 H 1.09001 * 109.45165 * 181.26451 * 12 11 10 41 41 H 1.08998 * 109.47144 * 94.30769 * 16 15 13 42 42 H 1.09002 * 109.46837 * 214.30794 * 16 15 13 43 43 H 1.09003 * 109.47192 * 334.30839 * 16 15 13 44 44 H 0.97000 * 119.99796 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.58892 * 246.15993 * 25 9 7 46 46 H 1.09007 * 109.58580 * 6.58480 * 25 9 7 47 47 H 1.08004 * 119.61853 * 179.70253 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1903 1.2016 0.0000 4 6 3.5764 1.1904 0.0005 5 6 4.2266 -0.0344 0.0005 6 6 5.7322 -0.0991 0.0017 7 6 6.2331 -0.1212 1.4228 8 8 5.4450 -0.0881 2.3441 9 7 7.5567 -0.1786 1.6700 10 6 8.5234 -0.2262 0.5646 11 6 9.4440 -1.4296 0.7602 12 6 10.0809 -1.3610 2.1501 13 6 8.9858 -1.4099 3.2180 14 1 8.4090 -2.3280 3.1058 15 7 9.5976 -1.3765 4.5487 16 6 10.4293 -0.2370 4.9440 17 6 9.3922 -2.4101 5.4230 18 1 9.1022 -3.3819 5.0516 19 6 9.5566 -2.2090 6.7865 20 7 9.6678 -0.9870 7.2627 21 14 9.6199 -3.6724 7.9456 22 1 11.0262 -4.1252 8.0949 23 1 9.0840 -3.2764 9.2727 24 1 8.7998 -4.7791 7.3909 25 6 8.0602 -0.2014 3.0501 26 6 3.4766 -1.1949 -0.0058 27 7 2.1586 -1.1464 0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 1.6509 2.1373 -0.0007 32 1 4.1368 2.1137 0.0001 33 1 6.0574 -1.0037 -0.5123 34 1 6.1338 0.7747 -0.5115 35 1 7.9916 -0.3248 -0.3818 36 1 9.1173 0.6876 0.5588 37 1 10.2258 -1.4182 0.0007 38 1 8.8629 -2.3474 0.6712 39 1 10.6416 -0.4313 2.2471 40 1 10.7553 -2.2070 2.2825 41 1 9.8189 0.4897 5.4799 42 1 11.2351 -0.5827 5.5915 43 1 10.8527 0.2297 4.0545 44 1 9.7830 -0.8464 8.2156 45 1 8.6155 0.7147 3.2516 46 1 7.2229 -0.2835 3.7433 47 1 3.9754 -2.1529 -0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027686745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:13 Heat of formation + Delta-G solvation = -2.148356 kcal Electronic energy + Delta-G solvation = -26671.495727 eV Core-core repulsion = 23046.775598 eV Total energy + Delta-G solvation = -3624.720129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60217 -40.78456 -38.89286 -36.77075 -35.06434 -33.95873 -33.21349 -32.81129 -31.31689 -30.08820 -28.07824 -27.37842 -25.89509 -25.15599 -24.43257 -23.03326 -22.63472 -21.01009 -19.82414 -18.80165 -18.20299 -17.69267 -17.31713 -17.01029 -16.71812 -16.17711 -15.87259 -15.68228 -15.34966 -15.24531 -15.19306 -14.62739 -14.40774 -14.18304 -14.03904 -13.88642 -13.79926 -13.51156 -13.19328 -13.16364 -12.98683 -12.92227 -12.83691 -12.49782 -12.43241 -12.21804 -12.13619 -12.05162 -11.73204 -11.61758 -11.38213 -10.95836 -10.67191 -10.65442 -10.40300 -9.69715 -9.65850 -8.78776 -7.86428 -5.34482 0.12905 0.37113 1.42595 1.43660 1.52629 1.65501 2.03227 2.48263 2.82813 3.26877 3.39364 3.61491 3.64822 3.78198 3.83750 4.00569 4.05971 4.06159 4.13861 4.19124 4.29703 4.39379 4.40834 4.54508 4.63421 4.68755 4.70616 4.76366 4.78929 4.81812 4.88174 4.92368 4.96633 5.07383 5.16297 5.19651 5.20998 5.26052 5.32845 5.44076 5.52455 5.57739 5.61433 5.70170 5.81756 6.29579 6.51621 7.05403 7.11804 7.23060 7.84271 8.26017 9.16260 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003042 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.978452 B = 9201.642631 C =10231.225671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.101 3.899 3 C -0.175 4.175 4 C -0.069 4.069 5 C -0.131 4.131 6 C -0.082 4.082 7 C 0.504 3.496 8 O -0.595 6.595 9 N -0.606 5.606 10 C 0.101 3.899 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.167 3.833 14 H 0.042 0.958 15 N -0.610 5.610 16 C 0.180 3.820 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.272 1.272 25 C 0.115 3.885 26 C 0.096 3.904 27 N -0.517 5.517 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.054 0.946 41 H -0.003 1.003 42 H 0.017 0.983 43 H 0.037 0.963 44 H 0.248 0.752 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 5.817 -24.084 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.036 4.036 3 C -0.195 4.195 4 C -0.094 4.094 5 C -0.134 4.134 6 C -0.122 4.122 7 C 0.294 3.706 8 O -0.476 6.476 9 N -0.338 5.338 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.163 4.163 13 C 0.059 3.941 14 H 0.060 0.940 15 N -0.333 5.333 16 C 0.035 3.965 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.061 4.061 27 N -0.227 5.227 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.015 0.985 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.585 5.104 -23.434 25.473 hybrid contribution 0.571 0.013 1.832 1.919 sum -8.014 5.117 -21.602 23.602 Atomic orbital electron populations 1.20770 0.87066 1.03915 1.03994 1.21869 0.98542 0.88549 0.94670 1.22253 0.94964 0.99978 1.02261 1.21811 0.94988 0.98359 0.94268 1.20509 0.96370 0.94543 1.01957 1.20686 0.90849 1.08492 0.92142 1.21383 0.81541 0.75202 0.92451 1.90728 1.56168 1.52045 1.48656 1.48356 1.06124 1.72048 1.07315 1.22087 0.91120 0.99503 0.89278 1.21836 0.99724 0.98452 0.96236 1.21933 0.97753 1.01884 0.94740 1.20784 0.92801 0.95119 0.85388 0.94006 1.44183 1.55121 1.21592 1.12388 1.20489 0.92642 0.88598 0.94724 1.19536 1.41965 0.90151 0.87848 0.91610 1.25800 1.01826 0.98788 0.98473 1.70242 1.55621 1.20292 1.12282 0.85230 0.77872 0.79131 0.78018 1.20704 1.22218 1.19686 1.21904 0.97030 0.99357 0.82743 1.22822 0.89440 0.98814 0.94981 1.67507 1.10445 1.30747 1.13957 0.88943 0.91495 0.88908 0.82128 0.82845 0.84575 0.84040 0.85630 0.89708 0.87216 0.91827 0.91827 0.92734 0.98484 0.96380 0.94478 0.94265 0.92491 0.94341 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.85 16 2 C 0.10 2.30 6.78 42.55 0.29 2.59 16 3 C -0.18 -3.42 9.74 22.36 0.22 -3.20 16 4 C -0.07 -1.38 9.86 22.46 0.22 -1.16 16 5 C -0.13 -2.91 4.39 -19.77 -0.09 -3.00 16 6 C -0.08 -1.38 4.20 29.10 0.12 -1.26 16 7 C 0.50 14.80 7.69 87.66 0.67 15.47 16 8 O -0.60 -24.92 15.45 -3.05 -0.05 -24.97 16 9 N -0.61 -17.02 2.98 -819.80 -2.44 -19.46 16 10 C 0.10 1.66 6.31 86.22 0.54 2.21 16 11 C -0.12 -2.33 6.07 30.53 0.19 -2.14 16 12 C -0.12 -3.69 5.13 30.62 0.16 -3.54 16 13 C 0.17 6.81 2.74 45.05 0.12 6.93 16 14 H 0.04 1.86 7.86 -2.39 -0.02 1.84 16 15 N -0.61 -31.22 2.82 -702.42 -1.98 -33.20 16 16 C 0.18 8.99 7.91 127.77 1.01 10.00 16 17 C -0.26 -15.13 9.60 84.03 0.81 -14.33 16 18 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 19 C -0.05 -3.13 5.11 84.86 0.43 -2.70 16 20 N -0.94 -57.39 10.63 21.65 0.23 -57.16 16 21 Si 0.97 46.89 29.57 68.60 2.03 48.92 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 25 C 0.12 4.52 5.79 86.35 0.50 5.02 16 26 C 0.10 2.45 10.86 84.67 0.92 3.37 16 27 N -0.52 -14.26 10.27 -183.88 -1.89 -16.15 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.14 1.47 7.63 -2.38 -0.02 1.45 16 34 H 0.14 1.30 7.91 -2.39 -0.02 1.29 16 35 H 0.13 0.98 5.93 -2.39 -0.01 0.97 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.85 6.71 -2.39 -0.02 1.83 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.00 -0.18 7.41 -2.39 -0.02 -0.19 16 42 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 43 H 0.04 1.52 6.45 -2.39 -0.02 1.51 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.06 2.25 7.51 -2.39 -0.02 2.23 16 46 H 0.04 1.90 7.01 -2.38 -0.02 1.88 16 47 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -82.42 374.26 3.69 -78.73 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.95 Total: 9.88 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.84 Total: 13.42 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -6.08 Total: -125.97 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -82.42 3.69 -78.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027686745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.578 kcal (2) G-P(sol) polarization free energy of solvation -82.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds