Wall clock time and date at job start Tue Mar 31 2020 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48501 * 109.47137 * 239.99681 * 3 2 1 5 5 H 1.48499 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47319 * 119.99944 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21632 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47264 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.46684 * 126.94279 * 0.02562 * 19 17 16 21 21 C 1.34492 * 106.33372 * 179.97438 * 20 19 17 22 22 N 1.36449 * 108.85601 * 359.97438 * 21 20 19 23 23 H 0.96998 * 124.84712 * 180.02562 * 22 21 20 24 24 C 1.34664 * 110.29570 * 359.75545 * 22 21 20 25 25 C 1.50694 * 125.79974 * 180.29459 * 24 22 21 26 26 C 1.53784 * 113.61900 * 37.63012 * 25 24 22 27 27 C 1.53781 * 87.08410 * 220.02143 * 26 25 24 28 28 C 1.53782 * 87.08122 * 25.42681 * 27 26 25 29 29 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 31 31 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 32 32 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 33 33 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 34 34 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 35 35 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 36 36 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 37 37 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 38 38 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 39 39 H 1.07998 * 126.83704 * 359.97438 * 20 19 17 40 40 H 1.07999 * 125.57020 * 180.02562 * 21 20 19 41 41 H 1.09004 * 112.84925 * 168.93680 * 25 24 22 42 42 H 1.08997 * 113.60977 * 334.56459 * 26 25 24 43 43 H 1.08997 * 113.61751 * 105.46583 * 26 25 24 44 44 H 1.09001 * 113.61131 * 270.88069 * 27 26 25 45 45 H 1.08997 * 113.62003 * 139.97717 * 27 26 25 46 46 H 1.09000 * 113.61641 * 220.02009 * 28 27 26 47 47 H 1.09005 * 113.61259 * 89.11951 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8074 -4.3763 -3.9535 19 6 4.4459 -6.5334 -3.3383 20 6 4.5027 -7.6785 -2.4233 21 6 5.2149 -8.6303 -3.0524 22 7 5.5962 -8.1599 -4.2752 23 1 6.1202 -8.6580 -4.9218 24 6 5.1360 -6.9077 -4.4582 25 6 5.3481 -6.0614 -5.6869 26 6 5.2950 -6.8587 -7.0009 27 6 6.4690 -5.9906 -7.4835 28 6 6.8291 -5.7925 -6.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.4234 -1.8591 1.0698 31 1 -0.6984 -2.3872 -0.6175 32 1 0.0113 -4.1089 1.8206 33 1 -1.2709 -4.3832 0.5936 34 1 0.3276 -4.9734 -1.1088 35 1 1.1305 -5.6530 0.3446 36 1 1.6416 -3.6213 -2.4174 37 1 3.1752 -2.9312 -1.8342 38 1 3.0992 -5.7173 -1.2622 39 1 4.0607 -7.7443 -1.4402 40 1 5.4464 -9.6075 -2.6550 41 1 4.7302 -5.1635 -5.6943 42 1 5.5503 -7.9118 -6.8831 43 1 4.3767 -6.7056 -7.5678 44 1 6.1573 -5.0735 -7.9834 45 1 7.2205 -6.5455 -8.0451 46 1 7.1494 -4.7785 -5.7619 47 1 7.5039 -6.5541 -5.6107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028136921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:39 Heat of formation + Delta-G solvation = 23.543343 kcal Electronic energy + Delta-G solvation = -26548.168491 eV Core-core repulsion = 22924.562438 eV Total energy + Delta-G solvation = -3623.606053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.35832 -40.31063 -39.12606 -39.09404 -35.65348 -34.38969 -32.22150 -31.34615 -30.64859 -30.13952 -26.84885 -26.57317 -26.28648 -25.41937 -23.18718 -21.99297 -21.76474 -21.21338 -20.43324 -20.31810 -18.88931 -18.58315 -17.29651 -17.04396 -16.62224 -16.37777 -16.22540 -15.82117 -15.62215 -15.37642 -15.17643 -14.49178 -14.43389 -14.02205 -13.95398 -13.67437 -13.57430 -13.44697 -13.37703 -13.21019 -13.05716 -12.99152 -12.86322 -12.66354 -12.05804 -11.86256 -11.71256 -11.65327 -11.46128 -11.40802 -11.39026 -11.29008 -10.77291 -10.67864 -10.09884 -9.66895 -9.05523 -8.86201 -7.88211 -5.25736 0.76174 1.42977 1.47073 1.52621 1.60322 2.14348 2.46001 2.61243 2.61507 3.30821 3.60093 3.68648 3.75327 3.77248 3.94063 3.99073 4.01460 4.12258 4.21467 4.27415 4.36862 4.46365 4.54355 4.57256 4.67106 4.74467 4.76010 4.85032 4.97292 4.99944 5.01425 5.02831 5.04829 5.11442 5.15906 5.23613 5.33604 5.41966 5.46803 5.52914 5.63043 5.67929 5.78592 5.84334 6.04141 6.23405 6.65927 6.80000 7.09388 7.43885 7.76368 8.42019 9.22219 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.003130 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.576864 B = 8944.696865 C =10226.817250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.049 0.951 15 C 0.133 3.867 16 N -0.705 5.705 17 C 0.575 3.425 18 O -0.601 6.601 19 C -0.265 4.265 20 C -0.186 4.186 21 C 0.004 3.996 22 N -0.534 5.534 23 H 0.430 0.570 24 C 0.114 3.886 25 C -0.073 4.073 26 C -0.127 4.127 27 C -0.132 4.132 28 C -0.130 4.130 29 H 0.248 0.752 30 H 0.039 0.961 31 H -0.010 1.010 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.412 0.588 39 H 0.161 0.839 40 H 0.213 0.787 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.056 0.944 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -24.576 -8.497 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.150 4.150 13 C 0.042 3.958 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.356 5.356 17 C 0.366 3.634 18 O -0.484 6.484 19 C -0.275 4.275 20 C -0.209 4.209 21 C -0.123 4.123 22 N -0.131 5.131 23 H 0.270 0.730 24 C -0.006 4.006 25 C -0.092 4.092 26 C -0.165 4.165 27 C -0.169 4.169 28 C -0.168 4.168 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.008 0.992 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.249 0.751 39 H 0.179 0.821 40 H 0.229 0.771 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.360 -23.834 -9.101 28.349 hybrid contribution 0.144 1.425 -0.011 1.432 sum 12.504 -22.409 -9.112 27.231 Atomic orbital electron populations 1.70131 1.06218 1.25471 1.57497 1.25665 0.96553 1.00944 1.02106 0.85255 0.77363 0.79215 0.78145 1.21072 1.21631 1.19833 1.19257 0.90665 0.83762 1.43440 0.90888 1.44752 1.06398 1.01866 1.80560 1.21290 0.83882 0.93671 0.96367 1.22892 0.99538 0.95208 0.99414 1.22621 0.95013 0.97337 1.00065 1.21319 0.95940 0.86778 0.91779 0.93371 1.21616 0.94779 0.84428 0.98514 1.45605 1.54192 1.17246 1.18561 1.18048 0.77409 0.86745 0.81211 1.90679 1.63881 1.47853 1.46034 1.20193 1.12374 0.95800 0.99177 1.22312 1.05624 0.92229 1.00770 1.22335 1.02811 1.01411 0.85789 1.41465 1.43215 1.11732 1.16668 0.73000 1.20040 0.97633 0.86791 0.96109 1.21549 0.99387 0.98280 0.89970 1.22995 0.99639 0.99309 0.94537 1.22779 0.98244 1.00376 0.95483 1.22984 0.94332 1.02135 0.97336 0.94255 0.94298 0.99168 0.91016 0.89749 0.91717 0.87613 0.94959 0.95232 0.75125 0.82124 0.77059 0.88631 0.88278 0.91400 0.90473 0.88864 0.92540 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 10.54 21.65 0.23 -58.20 16 2 C -0.06 -3.48 5.47 84.86 0.46 -3.02 16 3 Si 0.97 47.85 29.55 68.60 2.03 49.88 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.24 -14.09 9.73 84.03 0.82 -13.27 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -32.06 3.13 -668.26 -2.09 -34.15 16 10 C 0.17 8.67 5.42 86.86 0.47 9.14 16 11 C -0.13 -4.71 7.10 32.03 0.23 -4.48 16 12 C -0.11 -3.60 6.07 31.82 0.19 -3.41 16 13 C 0.15 6.10 3.22 45.34 0.15 6.25 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.13 5.69 5.09 86.38 0.44 6.13 16 16 N -0.70 -23.83 5.40 -466.52 -2.52 -26.35 16 17 C 0.58 21.14 7.81 86.62 0.68 21.82 16 18 O -0.60 -27.25 14.61 -4.13 -0.06 -27.31 16 19 C -0.27 -7.39 6.29 -19.04 -0.12 -7.51 16 20 C -0.19 -3.53 10.56 23.62 0.25 -3.28 16 21 C 0.00 0.05 11.89 83.12 0.99 1.04 16 22 N -0.53 -7.16 5.72 -182.72 -1.04 -8.21 16 23 H 0.43 2.67 8.22 -92.71 -0.76 1.90 16 24 C 0.11 2.61 6.22 41.78 0.26 2.87 16 25 C -0.07 -1.69 3.93 -11.01 -0.04 -1.73 16 26 C -0.13 -1.98 7.62 31.12 0.24 -1.74 16 27 C -0.13 -1.90 8.08 31.12 0.25 -1.65 16 28 C -0.13 -2.38 7.63 31.12 0.24 -2.14 16 29 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.04 2.19 6.86 -2.39 -0.02 2.17 16 31 H -0.01 -0.54 8.08 -2.39 -0.02 -0.56 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.06 2.09 7.78 -2.39 -0.02 2.07 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.03 1.54 8.03 -2.39 -0.02 1.52 16 37 H 0.03 1.48 7.86 -2.39 -0.02 1.46 16 38 H 0.41 10.74 7.37 -92.71 -0.68 10.05 16 39 H 0.16 2.36 7.70 -2.91 -0.02 2.34 16 40 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.10 3.11 5.94 -2.38 -0.01 3.10 16 42 H 0.10 0.98 7.22 -2.39 -0.02 0.96 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 1.32 8.09 -2.38 -0.02 1.30 16 Total: -1.00 -80.63 374.88 1.57 -79.06 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.46 Total: 20.25 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.50 Total: 5.02 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.43 Total: -126.90 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -80.63 1.57 -79.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028136921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.603 kcal (2) G-P(sol) polarization free energy of solvation -80.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds