Wall clock time and date at job start Tue Mar 31 2020 11:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31700 * 119.71361 * 2 1 4 4 C 1.31926 * 121.87557 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.45856 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46862 * 264.99903 * 5 4 3 7 7 C 1.53001 * 109.47284 * 144.99899 * 5 4 3 8 8 C 1.38350 * 121.08158 * 0.25363 * 4 3 2 9 9 C 1.38358 * 119.30076 * 359.47578 * 8 4 3 10 10 C 1.39516 * 119.71506 * 179.97438 * 2 1 3 11 11 C 1.47842 * 120.56246 * 0.02562 * 10 2 1 12 12 O 1.21552 * 119.99886 * 6.21902 * 11 10 2 13 13 N 1.34779 * 119.99876 * 186.21471 * 11 10 2 14 14 C 1.46496 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47252 * 180.02562 * 14 13 11 16 16 C 1.53943 * 113.73851 * 273.74295 * 15 14 13 17 17 N 1.47815 * 86.03766 * 222.08375 * 16 15 14 18 18 C 1.36937 * 134.45967 * 204.65216 * 17 16 15 19 19 H 1.08001 * 119.99826 * 179.86419 * 18 17 16 20 20 C 1.38815 * 119.99812 * 359.85644 * 18 17 16 21 21 N 1.31615 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47221 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47224 * 119.99883 * 22 20 18 25 25 H 1.48503 * 109.47121 * 240.00110 * 22 20 18 26 26 C 1.47584 * 91.04887 * 24.54672 * 17 16 15 27 27 H 1.08996 * 109.47072 * 96.56953 * 1 2 3 28 28 H 1.08993 * 109.46681 * 216.57269 * 1 2 3 29 29 H 1.08997 * 109.46596 * 336.57142 * 1 2 3 30 30 H 1.09001 * 109.47175 * 24.99449 * 5 4 3 31 31 H 1.08999 * 109.47235 * 59.99403 * 6 5 4 32 32 H 1.08999 * 109.47149 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.46855 * 299.99742 * 6 5 4 34 34 H 1.09003 * 109.46777 * 180.02562 * 7 5 4 35 35 H 1.08999 * 109.46467 * 299.99460 * 7 5 4 36 36 H 1.08991 * 109.47337 * 59.99763 * 7 5 4 37 37 H 1.08001 * 120.34951 * 179.72498 * 8 4 3 38 38 H 1.08003 * 120.85346 * 180.24126 * 9 8 4 39 39 H 0.96994 * 120.00230 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47076 * 300.00395 * 14 13 11 41 41 H 1.09004 * 109.47203 * 60.00356 * 14 13 11 42 42 H 1.09002 * 112.94264 * 45.33137 * 15 14 13 43 43 H 1.09004 * 113.77477 * 336.34421 * 16 15 14 44 44 H 1.08995 * 113.77278 * 107.74697 * 16 15 14 45 45 H 0.96995 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.77404 * 221.15226 * 26 17 16 47 47 H 1.08999 * 113.76521 * 89.75684 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4782 1.1936 -0.0005 5 6 4.1693 2.5328 -0.0011 6 6 4.5144 2.9279 -1.4383 7 6 5.4535 2.4443 0.8259 8 6 4.2366 0.0365 -0.0063 9 6 3.5988 -1.1912 -0.0006 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4956 0.0005 12 8 0.2556 -2.5046 -0.1140 13 7 2.1392 -3.6561 0.1274 14 6 1.4129 -4.9284 0.1269 15 6 2.4052 -6.0822 0.2844 16 6 3.0104 -6.5652 -1.0461 17 7 2.8179 -7.9327 -0.5192 18 6 3.4074 -9.1451 -0.7596 19 1 3.0755 -10.0225 -0.2245 20 6 4.4316 -9.2462 -1.6911 21 7 4.8363 -8.1768 -2.3430 22 14 5.2353 -10.9001 -2.0196 23 1 4.6037 -11.9362 -1.1634 24 1 5.0568 -11.2621 -3.4487 25 1 6.6847 -10.8168 -1.7073 26 6 1.7374 -7.4665 0.3716 27 1 -0.3633 -0.1176 -1.0209 28 1 -0.3632 -0.8253 0.6123 29 1 -0.3632 0.9429 0.4086 30 1 3.5084 3.2829 0.4332 31 1 3.5995 2.9909 -2.0275 32 1 5.0138 3.8968 -1.4388 33 1 5.1753 2.1778 -1.8726 34 1 5.9531 3.4131 0.8258 35 1 5.2076 2.1629 1.8498 36 1 6.1144 1.6943 0.3916 37 1 5.3153 0.0911 -0.0111 38 1 4.1662 -2.1102 -0.0010 39 1 3.1048 -3.6490 0.2184 40 1 0.7048 -4.9428 0.9554 41 1 0.8736 -5.0384 -0.8140 42 1 3.1458 -5.9023 1.0638 43 1 2.3947 -6.3391 -1.9167 44 1 4.0560 -6.2878 -1.1795 45 1 5.5522 -8.2475 -2.9936 46 1 1.7684 -7.9073 1.3680 47 1 0.7469 -7.5058 -0.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031982905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:13 Heat of formation + Delta-G solvation = 41.796312 kcal Electronic energy + Delta-G solvation = -25853.703297 eV Core-core repulsion = 22230.888752 eV Total energy + Delta-G solvation = -3622.814545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02365 -39.31450 -37.99568 -35.98247 -34.70889 -33.06422 -32.14531 -31.63349 -29.09820 -27.85877 -27.30510 -25.92199 -24.86376 -24.62944 -22.68468 -22.09413 -21.02740 -20.26616 -19.17229 -17.70467 -17.11914 -16.73427 -15.99307 -15.60375 -15.47250 -15.00546 -14.91880 -14.64756 -14.31323 -14.09881 -13.75817 -13.49787 -13.35142 -13.27822 -13.11983 -12.80389 -12.52858 -12.39883 -12.27597 -12.00238 -11.59310 -11.50262 -11.43990 -11.37228 -11.28988 -11.03639 -10.76124 -10.59019 -10.06603 -10.00828 -9.90841 -9.80084 -9.52285 -9.39271 -9.12954 -8.84121 -8.77970 -6.91496 -5.80548 -3.12599 0.49173 1.00693 2.82089 3.19234 3.36316 3.41900 3.44261 3.63299 3.82605 4.30727 4.42123 4.49614 4.58616 4.69911 4.75042 4.83912 4.90403 5.11849 5.22723 5.26056 5.29237 5.34308 5.35603 5.44109 5.49322 5.55636 5.61898 5.62521 5.71394 5.78183 5.80524 5.85201 5.88724 5.98694 6.01311 6.13288 6.20315 6.32282 6.47118 6.52095 6.60319 6.70631 7.17424 7.30832 7.50693 7.54669 7.75809 7.94406 8.23389 9.01305 9.67469 10.56110 11.36738 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002510 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.824966 B =11150.497368 C =12366.987206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.192 3.808 3 N -0.491 5.491 4 C 0.161 3.839 5 C -0.049 4.049 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.186 4.186 9 C -0.035 4.035 10 C -0.194 4.194 11 C 0.560 3.440 12 O -0.534 6.534 13 N -0.715 5.715 14 C 0.131 3.869 15 C -0.154 4.154 16 C 0.168 3.832 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.129 3.871 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.400 0.600 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 22.153 6.313 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.054 3.946 3 N -0.200 5.200 4 C 0.023 3.977 5 C -0.069 4.069 6 C -0.200 4.200 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.061 4.061 10 C -0.199 4.199 11 C 0.346 3.654 12 O -0.413 6.413 13 N -0.366 5.366 14 C 0.007 3.993 15 C -0.174 4.174 16 C 0.043 3.957 17 N -0.339 5.339 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.002 3.998 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.235 0.765 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.831 22.629 6.080 23.503 hybrid contribution 1.518 -1.806 -0.385 2.391 sum -0.313 20.823 5.695 21.590 Atomic orbital electron populations 1.21045 0.87504 1.03702 1.04284 1.21501 0.97503 0.86403 0.89225 1.67462 1.09244 1.28810 1.14501 1.21440 0.89339 0.95458 0.91467 1.20113 0.96509 0.92670 0.97561 1.21806 1.01950 1.01597 0.94599 1.21939 0.96318 1.02515 0.99839 1.21907 1.01821 0.92333 1.04529 1.21834 0.93207 0.98962 0.92108 1.20819 0.94376 0.95189 1.09530 1.17977 0.87066 0.83391 0.76932 1.90718 1.13506 1.87099 1.49964 1.45979 1.11134 1.06012 1.73487 1.21498 0.94789 0.81003 1.02030 1.23819 0.98270 0.93074 1.02258 1.22355 0.99570 0.83372 0.90389 1.45996 1.37097 1.05220 1.45632 1.19082 1.12275 0.85029 1.18545 0.90179 1.24786 0.99365 0.97565 0.98856 1.69816 1.30990 1.27071 1.29051 0.86045 0.79051 0.82934 0.77729 1.20447 1.21733 1.21705 1.22482 0.92419 0.90067 0.94798 0.89909 0.87851 0.91458 0.89077 0.92205 0.91715 0.92296 0.91684 0.92262 0.91913 0.84026 0.84074 0.76498 0.91693 0.91142 0.89229 0.95457 0.91012 0.93723 0.93621 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.88 36.01 0.32 -0.98 16 2 C 0.19 2.49 6.82 -82.17 -0.56 1.93 16 3 N -0.49 -6.09 10.17 -5.42 -0.06 -6.14 16 4 C 0.16 1.66 5.79 -82.51 -0.48 1.19 16 5 C -0.05 -0.38 3.23 -91.77 -0.30 -0.67 16 6 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 7 C -0.15 -0.86 8.62 37.16 0.32 -0.54 16 8 C -0.19 -1.75 9.16 -39.50 -0.36 -2.11 16 9 C -0.03 -0.36 9.63 -38.87 -0.37 -0.74 16 10 C -0.19 -2.46 5.89 -104.82 -0.62 -3.07 16 11 C 0.56 8.01 7.70 -12.33 -0.09 7.92 16 12 O -0.53 -8.88 13.38 5.32 0.07 -8.81 16 13 N -0.72 -9.59 5.51 -61.25 -0.34 -9.93 16 14 C 0.13 1.96 5.51 -4.04 -0.02 1.94 16 15 C -0.15 -2.67 3.93 -89.70 -0.35 -3.02 16 16 C 0.17 3.79 7.08 -2.84 -0.02 3.77 16 17 N -0.61 -15.49 3.70 -177.69 -0.66 -16.14 16 18 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.92 -26.96 11.39 55.49 0.63 -26.32 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.13 2.54 8.51 -2.97 -0.03 2.52 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.35 5.85 -51.93 -0.30 1.05 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.33 6.48 -51.93 -0.34 -0.01 16 37 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 38 H 0.14 1.17 6.57 -52.48 -0.34 0.83 16 39 H 0.40 4.60 6.62 -40.82 -0.27 4.33 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 44 H 0.07 1.76 7.16 -51.93 -0.37 1.39 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -32.77 379.73 -9.52 -42.30 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.39 Total: 1.61 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.48 Total: 0.77 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.42 Total: -58.54 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.77 -9.52 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031982905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.093 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds