Wall clock time and date at job start Tue Mar 31 2020 11:36:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.31700 * 119.71361 * 2 1
4 4 C 1.31926 * 121.87557 * 180.02562 * 3 2 1
5 5 C 1.50700 * 119.45856 * 179.97438 * 4 3 2
6 6 C 1.53000 * 109.46862 * 264.99903 * 5 4 3
7 7 C 1.53001 * 109.47284 * 144.99899 * 5 4 3
8 8 C 1.38350 * 121.08158 * 0.25363 * 4 3 2
9 9 C 1.38358 * 119.30076 * 359.47578 * 8 4 3
10 10 C 1.39516 * 119.71506 * 179.97438 * 2 1 3
11 11 C 1.47842 * 120.56246 * 0.02562 * 10 2 1
12 12 O 1.21552 * 119.99886 * 6.21902 * 11 10 2
13 13 N 1.34779 * 119.99876 * 186.21471 * 11 10 2
14 14 C 1.46496 * 119.99742 * 180.02562 * 13 11 10
15 15 C 1.53002 * 109.47252 * 180.02562 * 14 13 11
16 16 C 1.53943 * 113.73851 * 273.74295 * 15 14 13
17 17 N 1.47815 * 86.03766 * 222.08375 * 16 15 14
18 18 C 1.36937 * 134.45967 * 204.65216 * 17 16 15
19 19 H 1.08001 * 119.99826 * 179.86419 * 18 17 16
20 20 C 1.38815 * 119.99812 * 359.85644 * 18 17 16
21 21 N 1.31615 * 120.00180 * 0.02562 * 20 18 17
22 22 Si 1.86794 * 119.99763 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47221 * 359.97438 * 22 20 18
24 24 H 1.48498 * 109.47224 * 119.99883 * 22 20 18
25 25 H 1.48503 * 109.47121 * 240.00110 * 22 20 18
26 26 C 1.47584 * 91.04887 * 24.54672 * 17 16 15
27 27 H 1.08996 * 109.47072 * 96.56953 * 1 2 3
28 28 H 1.08993 * 109.46681 * 216.57269 * 1 2 3
29 29 H 1.08997 * 109.46596 * 336.57142 * 1 2 3
30 30 H 1.09001 * 109.47175 * 24.99449 * 5 4 3
31 31 H 1.08999 * 109.47235 * 59.99403 * 6 5 4
32 32 H 1.08999 * 109.47149 * 179.97438 * 6 5 4
33 33 H 1.09001 * 109.46855 * 299.99742 * 6 5 4
34 34 H 1.09003 * 109.46777 * 180.02562 * 7 5 4
35 35 H 1.08999 * 109.46467 * 299.99460 * 7 5 4
36 36 H 1.08991 * 109.47337 * 59.99763 * 7 5 4
37 37 H 1.08001 * 120.34951 * 179.72498 * 8 4 3
38 38 H 1.08003 * 120.85346 * 180.24126 * 9 8 4
39 39 H 0.96994 * 120.00230 * 359.97438 * 13 11 10
40 40 H 1.09002 * 109.47076 * 300.00395 * 14 13 11
41 41 H 1.09004 * 109.47203 * 60.00356 * 14 13 11
42 42 H 1.09002 * 112.94264 * 45.33137 * 15 14 13
43 43 H 1.09004 * 113.77477 * 336.34421 * 16 15 14
44 44 H 1.08995 * 113.77278 * 107.74697 * 16 15 14
45 45 H 0.96995 * 120.00020 * 179.97438 * 21 20 18
46 46 H 1.08998 * 113.77404 * 221.15226 * 26 17 16
47 47 H 1.08999 * 113.76521 * 89.75684 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.1599 1.1438 0.0000
4 6 3.4782 1.1936 -0.0005
5 6 4.1693 2.5328 -0.0011
6 6 4.5144 2.9279 -1.4383
7 6 5.4535 2.4443 0.8259
8 6 4.2366 0.0365 -0.0063
9 6 3.5988 -1.1912 -0.0006
10 6 2.1986 -1.2117 0.0005
11 6 1.4656 -2.4956 0.0005
12 8 0.2556 -2.5046 -0.1140
13 7 2.1392 -3.6561 0.1274
14 6 1.4129 -4.9284 0.1269
15 6 2.4052 -6.0822 0.2844
16 6 3.0104 -6.5652 -1.0461
17 7 2.8179 -7.9327 -0.5192
18 6 3.4074 -9.1451 -0.7596
19 1 3.0755 -10.0225 -0.2245
20 6 4.4316 -9.2462 -1.6911
21 7 4.8363 -8.1768 -2.3430
22 14 5.2353 -10.9001 -2.0196
23 1 4.6037 -11.9362 -1.1634
24 1 5.0568 -11.2621 -3.4487
25 1 6.6847 -10.8168 -1.7073
26 6 1.7374 -7.4665 0.3716
27 1 -0.3633 -0.1176 -1.0209
28 1 -0.3632 -0.8253 0.6123
29 1 -0.3632 0.9429 0.4086
30 1 3.5084 3.2829 0.4332
31 1 3.5995 2.9909 -2.0275
32 1 5.0138 3.8968 -1.4388
33 1 5.1753 2.1778 -1.8726
34 1 5.9531 3.4131 0.8258
35 1 5.2076 2.1629 1.8498
36 1 6.1144 1.6943 0.3916
37 1 5.3153 0.0911 -0.0111
38 1 4.1662 -2.1102 -0.0010
39 1 3.1048 -3.6490 0.2184
40 1 0.7048 -4.9428 0.9554
41 1 0.8736 -5.0384 -0.8140
42 1 3.1458 -5.9023 1.0638
43 1 2.3947 -6.3391 -1.9167
44 1 4.0560 -6.2878 -1.1795
45 1 5.5522 -8.2475 -2.9936
46 1 1.7684 -7.9073 1.3680
47 1 0.7469 -7.5058 -0.0816
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001031982905.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:36:13
Heat of formation + Delta-G solvation = 41.796312 kcal
Electronic energy + Delta-G solvation = -25853.703297 eV
Core-core repulsion = 22230.888752 eV
Total energy + Delta-G solvation = -3622.814545 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.02365 -39.31450 -37.99568 -35.98247 -34.70889 -33.06422 -32.14531 -31.63349
-29.09820 -27.85877 -27.30510 -25.92199 -24.86376 -24.62944 -22.68468 -22.09413
-21.02740 -20.26616 -19.17229 -17.70467 -17.11914 -16.73427 -15.99307 -15.60375
-15.47250 -15.00546 -14.91880 -14.64756 -14.31323 -14.09881 -13.75817 -13.49787
-13.35142 -13.27822 -13.11983 -12.80389 -12.52858 -12.39883 -12.27597 -12.00238
-11.59310 -11.50262 -11.43990 -11.37228 -11.28988 -11.03639 -10.76124 -10.59019
-10.06603 -10.00828 -9.90841 -9.80084 -9.52285 -9.39271 -9.12954 -8.84121
-8.77970 -6.91496 -5.80548 -3.12599 0.49173 1.00693 2.82089 3.19234
3.36316 3.41900 3.44261 3.63299 3.82605 4.30727 4.42123 4.49614
4.58616 4.69911 4.75042 4.83912 4.90403 5.11849 5.22723 5.26056
5.29237 5.34308 5.35603 5.44109 5.49322 5.55636 5.61898 5.62521
5.71394 5.78183 5.80524 5.85201 5.88724 5.98694 6.01311 6.13288
6.20315 6.32282 6.47118 6.52095 6.60319 6.70631 7.17424 7.30832
7.50693 7.54669 7.75809 7.94406 8.23389 9.01305 9.67469 10.56110
11.36738
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.017239 B = 0.002510 C = 0.002264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1623.824966 B =11150.497368 C =12366.987206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C 0.192 3.808
3 N -0.491 5.491
4 C 0.161 3.839
5 C -0.049 4.049
6 C -0.142 4.142
7 C -0.149 4.149
8 C -0.186 4.186
9 C -0.035 4.035
10 C -0.194 4.194
11 C 0.560 3.440
12 O -0.534 6.534
13 N -0.715 5.715
14 C 0.131 3.869
15 C -0.154 4.154
16 C 0.168 3.832
17 N -0.613 5.613
18 C -0.222 4.222
19 H 0.080 0.920
20 C -0.009 4.009
21 N -0.922 5.922
22 Si 0.912 3.088
23 H -0.279 1.279
24 H -0.290 1.290
25 H -0.290 1.290
26 C 0.129 3.871
27 H 0.082 0.918
28 H 0.103 0.897
29 H 0.067 0.933
30 H 0.091 0.909
31 H 0.059 0.941
32 H 0.064 0.936
33 H 0.058 0.942
34 H 0.064 0.936
35 H 0.058 0.942
36 H 0.062 0.938
37 H 0.142 0.858
38 H 0.142 0.858
39 H 0.400 0.600
40 H 0.065 0.935
41 H 0.070 0.930
42 H 0.089 0.911
43 H 0.028 0.972
44 H 0.072 0.928
45 H 0.253 0.747
46 H 0.046 0.954
47 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.707 22.153 6.313 23.046
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.054 3.946
3 N -0.200 5.200
4 C 0.023 3.977
5 C -0.069 4.069
6 C -0.200 4.200
7 C -0.206 4.206
8 C -0.206 4.206
9 C -0.061 4.061
10 C -0.199 4.199
11 C 0.346 3.654
12 O -0.413 6.413
13 N -0.366 5.366
14 C 0.007 3.993
15 C -0.174 4.174
16 C 0.043 3.957
17 N -0.339 5.339
18 C -0.349 4.349
19 H 0.098 0.902
20 C -0.206 4.206
21 N -0.569 5.569
22 Si 0.742 3.258
23 H -0.204 1.204
24 H -0.217 1.217
25 H -0.217 1.217
26 C 0.002 3.998
27 H 0.101 0.899
28 H 0.121 0.879
29 H 0.085 0.915
30 H 0.109 0.891
31 H 0.078 0.922
32 H 0.083 0.917
33 H 0.077 0.923
34 H 0.083 0.917
35 H 0.077 0.923
36 H 0.081 0.919
37 H 0.160 0.840
38 H 0.159 0.841
39 H 0.235 0.765
40 H 0.083 0.917
41 H 0.089 0.911
42 H 0.108 0.892
43 H 0.045 0.955
44 H 0.090 0.910
45 H 0.063 0.937
46 H 0.064 0.936
47 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -1.831 22.629 6.080 23.503
hybrid contribution 1.518 -1.806 -0.385 2.391
sum -0.313 20.823 5.695 21.590
Atomic orbital electron populations
1.21045 0.87504 1.03702 1.04284 1.21501 0.97503 0.86403 0.89225
1.67462 1.09244 1.28810 1.14501 1.21440 0.89339 0.95458 0.91467
1.20113 0.96509 0.92670 0.97561 1.21806 1.01950 1.01597 0.94599
1.21939 0.96318 1.02515 0.99839 1.21907 1.01821 0.92333 1.04529
1.21834 0.93207 0.98962 0.92108 1.20819 0.94376 0.95189 1.09530
1.17977 0.87066 0.83391 0.76932 1.90718 1.13506 1.87099 1.49964
1.45979 1.11134 1.06012 1.73487 1.21498 0.94789 0.81003 1.02030
1.23819 0.98270 0.93074 1.02258 1.22355 0.99570 0.83372 0.90389
1.45996 1.37097 1.05220 1.45632 1.19082 1.12275 0.85029 1.18545
0.90179 1.24786 0.99365 0.97565 0.98856 1.69816 1.30990 1.27071
1.29051 0.86045 0.79051 0.82934 0.77729 1.20447 1.21733 1.21705
1.22482 0.92419 0.90067 0.94798 0.89909 0.87851 0.91458 0.89077
0.92205 0.91715 0.92296 0.91684 0.92262 0.91913 0.84026 0.84074
0.76498 0.91693 0.91142 0.89229 0.95457 0.91012 0.93723 0.93621
0.94577
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.30 8.88 36.01 0.32 -0.98 16
2 C 0.19 2.49 6.82 -82.17 -0.56 1.93 16
3 N -0.49 -6.09 10.17 -5.42 -0.06 -6.14 16
4 C 0.16 1.66 5.79 -82.51 -0.48 1.19 16
5 C -0.05 -0.38 3.23 -91.77 -0.30 -0.67 16
6 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16
7 C -0.15 -0.86 8.62 37.16 0.32 -0.54 16
8 C -0.19 -1.75 9.16 -39.50 -0.36 -2.11 16
9 C -0.03 -0.36 9.63 -38.87 -0.37 -0.74 16
10 C -0.19 -2.46 5.89 -104.82 -0.62 -3.07 16
11 C 0.56 8.01 7.70 -12.33 -0.09 7.92 16
12 O -0.53 -8.88 13.38 5.32 0.07 -8.81 16
13 N -0.72 -9.59 5.51 -61.25 -0.34 -9.93 16
14 C 0.13 1.96 5.51 -4.04 -0.02 1.94 16
15 C -0.15 -2.67 3.93 -89.70 -0.35 -3.02 16
16 C 0.17 3.79 7.08 -2.84 -0.02 3.77 16
17 N -0.61 -15.49 3.70 -177.69 -0.66 -16.14 16
18 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16
19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16
20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16
21 N -0.92 -26.96 11.39 55.49 0.63 -26.32 16
22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
26 C 0.13 2.54 8.51 -2.97 -0.03 2.52 16
27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
28 H 0.10 1.35 5.85 -51.93 -0.30 1.05 16
29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
36 H 0.06 0.33 6.48 -51.93 -0.34 -0.01 16
37 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16
38 H 0.14 1.17 6.57 -52.48 -0.34 0.83 16
39 H 0.40 4.60 6.62 -40.82 -0.27 4.33 16
40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
41 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16
42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16
43 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16
44 H 0.07 1.76 7.16 -51.93 -0.37 1.39 16
45 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16
46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
47 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16
LS Contribution 379.73 15.07 5.72 5.72
Total: -1.00 -32.77 379.73 -9.52 -42.30
By element:
Atomic # 1 Polarization: 9.00 SS G_CDS: -7.39 Total: 1.61 kcal
Atomic # 6 Polarization: 3.25 SS G_CDS: -2.48 Total: 0.77 kcal
Atomic # 7 Polarization: -58.12 SS G_CDS: -0.42 Total: -58.54 kcal
Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -32.77 -9.52 -42.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031982905.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.093 kcal
(2) G-P(sol) polarization free energy of solvation -32.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds