Wall clock time and date at job start Tue Mar 31 2020 11:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31700 * 119.71361 * 2 1 4 4 C 1.31926 * 121.87557 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.45856 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46862 * 264.99903 * 5 4 3 7 7 C 1.53001 * 109.47284 * 144.99899 * 5 4 3 8 8 C 1.38350 * 121.08158 * 0.25363 * 4 3 2 9 9 C 1.38358 * 119.30076 * 359.47578 * 8 4 3 10 10 C 1.39516 * 119.71506 * 179.97438 * 2 1 3 11 11 C 1.47842 * 120.56246 * 0.02562 * 10 2 1 12 12 O 1.21552 * 119.99886 * 6.21902 * 11 10 2 13 13 N 1.34779 * 119.99876 * 186.21471 * 11 10 2 14 14 C 1.46496 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47252 * 180.02562 * 14 13 11 16 16 C 1.53943 * 113.73851 * 273.74295 * 15 14 13 17 17 N 1.47815 * 86.03766 * 222.08375 * 16 15 14 18 18 C 1.36937 * 134.45967 * 204.65216 * 17 16 15 19 19 H 1.08001 * 119.99826 * 179.86419 * 18 17 16 20 20 C 1.38815 * 119.99812 * 359.85644 * 18 17 16 21 21 N 1.31615 * 120.00180 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99763 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47221 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47224 * 119.99883 * 22 20 18 25 25 H 1.48503 * 109.47121 * 240.00110 * 22 20 18 26 26 C 1.47584 * 91.04887 * 24.54672 * 17 16 15 27 27 H 1.08996 * 109.47072 * 96.56953 * 1 2 3 28 28 H 1.08993 * 109.46681 * 216.57269 * 1 2 3 29 29 H 1.08997 * 109.46596 * 336.57142 * 1 2 3 30 30 H 1.09001 * 109.47175 * 24.99449 * 5 4 3 31 31 H 1.08999 * 109.47235 * 59.99403 * 6 5 4 32 32 H 1.08999 * 109.47149 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.46855 * 299.99742 * 6 5 4 34 34 H 1.09003 * 109.46777 * 180.02562 * 7 5 4 35 35 H 1.08999 * 109.46467 * 299.99460 * 7 5 4 36 36 H 1.08991 * 109.47337 * 59.99763 * 7 5 4 37 37 H 1.08001 * 120.34951 * 179.72498 * 8 4 3 38 38 H 1.08003 * 120.85346 * 180.24126 * 9 8 4 39 39 H 0.96994 * 120.00230 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47076 * 300.00395 * 14 13 11 41 41 H 1.09004 * 109.47203 * 60.00356 * 14 13 11 42 42 H 1.09002 * 112.94264 * 45.33137 * 15 14 13 43 43 H 1.09004 * 113.77477 * 336.34421 * 16 15 14 44 44 H 1.08995 * 113.77278 * 107.74697 * 16 15 14 45 45 H 0.96995 * 120.00020 * 179.97438 * 21 20 18 46 46 H 1.08998 * 113.77404 * 221.15226 * 26 17 16 47 47 H 1.08999 * 113.76521 * 89.75684 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1438 0.0000 4 6 3.4782 1.1936 -0.0005 5 6 4.1693 2.5328 -0.0011 6 6 4.5144 2.9279 -1.4383 7 6 5.4535 2.4443 0.8259 8 6 4.2366 0.0365 -0.0063 9 6 3.5988 -1.1912 -0.0006 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4956 0.0005 12 8 0.2556 -2.5046 -0.1140 13 7 2.1392 -3.6561 0.1274 14 6 1.4129 -4.9284 0.1269 15 6 2.4052 -6.0822 0.2844 16 6 3.0104 -6.5652 -1.0461 17 7 2.8179 -7.9327 -0.5192 18 6 3.4074 -9.1451 -0.7596 19 1 3.0755 -10.0225 -0.2245 20 6 4.4316 -9.2462 -1.6911 21 7 4.8363 -8.1768 -2.3430 22 14 5.2353 -10.9001 -2.0196 23 1 4.6037 -11.9362 -1.1634 24 1 5.0568 -11.2621 -3.4487 25 1 6.6847 -10.8168 -1.7073 26 6 1.7374 -7.4665 0.3716 27 1 -0.3633 -0.1176 -1.0209 28 1 -0.3632 -0.8253 0.6123 29 1 -0.3632 0.9429 0.4086 30 1 3.5084 3.2829 0.4332 31 1 3.5995 2.9909 -2.0275 32 1 5.0138 3.8968 -1.4388 33 1 5.1753 2.1778 -1.8726 34 1 5.9531 3.4131 0.8258 35 1 5.2076 2.1629 1.8498 36 1 6.1144 1.6943 0.3916 37 1 5.3153 0.0911 -0.0111 38 1 4.1662 -2.1102 -0.0010 39 1 3.1048 -3.6490 0.2184 40 1 0.7048 -4.9428 0.9554 41 1 0.8736 -5.0384 -0.8140 42 1 3.1458 -5.9023 1.0638 43 1 2.3947 -6.3391 -1.9167 44 1 4.0560 -6.2878 -1.1795 45 1 5.5522 -8.2475 -2.9936 46 1 1.7684 -7.9073 1.3680 47 1 0.7469 -7.5058 -0.0816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031982905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:12 Heat of formation + Delta-G solvation = 21.511835 kcal Electronic energy + Delta-G solvation = -25854.582898 eV Core-core repulsion = 22230.888752 eV Total energy + Delta-G solvation = -3623.694146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93698 -40.46630 -39.54458 -36.68678 -35.94827 -34.36550 -33.72845 -32.49159 -30.64905 -28.87519 -27.95666 -27.37836 -26.54156 -25.60858 -23.87648 -23.38950 -22.05541 -21.19393 -20.62044 -18.88507 -18.61263 -18.01501 -16.99572 -16.85092 -16.61689 -16.52274 -16.02265 -15.68649 -15.52141 -15.21046 -14.97859 -14.68135 -14.41021 -14.20308 -14.06566 -13.99350 -13.76522 -13.30437 -13.20219 -13.11899 -13.00464 -12.89138 -12.79918 -12.52777 -12.22568 -12.21440 -12.05454 -11.85513 -11.80981 -11.57716 -11.26650 -10.98137 -10.89623 -10.86868 -10.41189 -10.17681 -9.78671 -8.91711 -7.91060 -5.23927 -0.40072 0.17285 1.45739 1.46520 1.56652 1.79416 2.08478 2.47201 2.72586 3.05711 3.30092 3.38933 3.56877 3.63180 3.69026 3.77223 3.98583 4.06187 4.14822 4.18030 4.27268 4.35789 4.53210 4.59783 4.64013 4.68585 4.75190 4.78858 4.82331 4.86372 4.87478 4.88845 4.95556 5.02346 5.04817 5.09694 5.19456 5.23055 5.26162 5.36952 5.42726 5.45395 5.55012 5.62512 5.65038 5.94219 6.47375 6.89402 6.92664 7.14187 7.60744 8.56292 9.25930 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.002510 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.824966 B =11150.497368 C =12366.987206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.175 3.825 3 N -0.509 5.509 4 C 0.155 3.845 5 C -0.048 4.048 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.181 4.181 9 C -0.034 4.034 10 C -0.211 4.211 11 C 0.560 3.440 12 O -0.562 6.562 13 N -0.709 5.709 14 C 0.143 3.857 15 C -0.115 4.115 16 C 0.166 3.834 17 N -0.647 5.647 18 C -0.234 4.234 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.977 3.023 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.126 3.874 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.172 0.828 38 H 0.162 0.838 39 H 0.410 0.590 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.011 0.989 44 H 0.046 0.954 45 H 0.248 0.752 46 H 0.063 0.937 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 22.769 7.432 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.037 3.963 3 N -0.219 5.219 4 C 0.017 3.983 5 C -0.068 4.068 6 C -0.197 4.197 7 C -0.202 4.202 8 C -0.200 4.200 9 C -0.059 4.059 10 C -0.216 4.216 11 C 0.348 3.652 12 O -0.443 6.443 13 N -0.361 5.361 14 C 0.019 3.981 15 C -0.135 4.135 16 C 0.040 3.960 17 N -0.373 5.373 18 C -0.362 4.362 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.001 3.999 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.189 0.811 38 H 0.180 0.820 39 H 0.247 0.753 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.622 23.252 7.231 24.358 hybrid contribution 1.125 -1.923 -0.724 2.342 sum 0.503 21.329 6.507 22.305 Atomic orbital electron populations 1.20939 0.87614 1.03648 1.03714 1.21615 0.97835 0.86898 0.89950 1.67491 1.10499 1.28589 1.15330 1.22012 0.88892 0.97170 0.90213 1.20206 0.97120 0.91045 0.98398 1.21796 1.01405 1.02754 0.93714 1.21933 0.95363 1.03769 0.99185 1.22246 1.03261 0.91468 1.03055 1.22111 0.92328 1.00373 0.91129 1.20723 0.95392 0.94086 1.11401 1.18218 0.86804 0.83966 0.76190 1.90706 1.14776 1.87534 1.51281 1.45841 1.11630 1.05281 1.73308 1.21239 0.94176 0.80830 1.01899 1.23409 0.97985 0.92912 0.99154 1.22276 0.98136 0.83119 0.92438 1.46430 1.38809 1.05252 1.46820 1.19464 1.12233 0.86360 1.18142 0.89935 1.25611 1.00386 1.00919 0.99212 1.69991 1.31538 1.28887 1.29719 0.85023 0.77878 0.79324 0.77181 1.19044 1.22203 1.21656 1.22695 0.91668 0.90936 0.94614 0.90473 0.89078 0.90489 0.89613 0.93807 0.89861 0.91932 0.90183 0.92636 0.90947 0.81062 0.82032 0.75271 0.90215 0.92597 0.87665 0.97116 0.93590 0.94297 0.91914 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.52 8.88 71.24 0.63 -1.89 16 2 C 0.18 4.53 6.82 42.89 0.29 4.83 16 3 N -0.51 -12.41 10.17 -171.05 -1.74 -14.15 16 4 C 0.16 2.98 5.79 42.57 0.25 3.22 16 5 C -0.05 -0.65 3.23 -11.54 -0.04 -0.69 16 6 C -0.14 -1.64 9.18 71.98 0.66 -0.98 16 7 C -0.15 -1.28 8.62 71.98 0.62 -0.66 16 8 C -0.18 -2.98 9.16 22.33 0.20 -2.78 16 9 C -0.03 -0.64 9.63 22.73 0.22 -0.42 16 10 C -0.21 -5.21 5.89 -19.99 -0.12 -5.33 16 11 C 0.56 15.78 7.70 86.79 0.67 16.45 16 12 O -0.56 -18.81 13.38 -3.88 -0.05 -18.86 16 13 N -0.71 -18.13 5.51 -465.97 -2.57 -20.70 16 14 C 0.14 4.09 5.51 86.38 0.48 4.56 16 15 C -0.11 -3.81 3.93 -10.14 -0.04 -3.85 16 16 C 0.17 7.50 7.08 86.44 0.61 8.11 16 17 N -0.65 -32.52 3.70 -716.09 -2.65 -35.18 16 18 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 21 N -0.95 -56.60 11.39 21.65 0.25 -56.36 16 22 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 C 0.13 4.78 8.51 86.48 0.74 5.51 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 2.47 5.85 -2.39 -0.01 2.45 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.50 6.48 -2.39 -0.02 0.49 16 37 H 0.17 1.74 6.30 -2.91 -0.02 1.73 16 38 H 0.16 2.29 6.57 -2.91 -0.02 2.27 16 39 H 0.41 8.72 6.62 -92.71 -0.61 8.10 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.80 7.88 -2.38 -0.02 1.78 16 42 H 0.11 3.21 8.14 -2.39 -0.02 3.20 16 43 H 0.01 0.53 7.92 -2.39 -0.02 0.51 16 44 H 0.05 2.30 7.16 -2.39 -0.02 2.29 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -71.56 379.73 2.16 -69.40 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.36 Total: 17.87 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.54 Total: 10.59 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -6.71 Total: -126.38 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.56 2.16 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031982905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.909 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds