Wall clock time and date at job start Tue Mar 31 2020 11:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38232 * 119.61356 * 2 1 4 4 C 1.38634 * 119.15657 * 179.70445 * 3 2 1 5 5 C 1.38673 * 118.42220 * 0.51783 * 4 3 2 6 6 C 1.50699 * 120.42042 * 179.78284 * 5 4 3 7 7 C 1.50698 * 109.47159 * 269.71799 * 6 5 4 8 8 O 1.21282 * 120.00078 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00034 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.35805 * 324.71975 * 10 9 7 12 12 C 1.54845 * 109.35943 * 204.99615 * 10 9 7 13 13 C 1.50121 * 110.81445 * 201.06155 * 12 10 9 14 14 C 1.52527 * 105.41433 * 97.68551 * 13 12 10 15 15 C 1.46238 * 114.27438 * 270.58765 * 14 13 12 16 16 N 1.50164 * 107.53002 * 58.41187 * 15 14 13 17 17 C 1.36940 * 120.53765 * 109.56644 * 16 15 14 18 18 H 1.08004 * 120.00183 * 172.84646 * 17 16 15 19 19 C 1.38815 * 119.99854 * 352.84170 * 17 16 15 20 20 N 1.31620 * 119.99900 * 319.29777 * 19 17 16 21 21 Si 1.86797 * 119.99615 * 139.29920 * 19 17 16 22 22 H 1.48504 * 109.46872 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47197 * 299.99684 * 21 19 17 24 24 H 1.48504 * 109.47341 * 60.00223 * 21 19 17 25 25 C 1.43430 * 118.92544 * 289.83407 * 16 15 14 26 26 C 1.38185 * 119.16057 * 359.49866 * 5 4 3 27 27 N 1.31854 * 119.62249 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47179 * 270.02261 * 1 2 3 29 29 H 1.08997 * 109.47358 * 30.02221 * 1 2 3 30 30 H 1.09005 * 109.47409 * 150.02192 * 1 2 3 31 31 H 1.07991 * 120.42439 * 359.95369 * 3 2 1 32 32 H 1.08003 * 120.78968 * 180.26989 * 4 3 2 33 33 H 1.09001 * 109.46901 * 149.71201 * 6 5 4 34 34 H 1.09005 * 109.46747 * 29.71938 * 6 5 4 35 35 H 0.97001 * 120.00173 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.20678 * 80.72016 * 12 10 9 37 37 H 1.09000 * 109.17081 * 321.38192 * 12 10 9 38 38 H 1.08998 * 110.25305 * 338.70962 * 13 12 10 39 39 H 1.09002 * 110.37182 * 216.71684 * 13 12 10 40 40 H 1.09004 * 108.51900 * 149.35009 * 14 13 12 41 41 H 1.08994 * 108.39931 * 31.74574 * 14 13 12 42 42 H 1.08996 * 109.85131 * 298.89823 * 15 14 13 43 43 H 1.09009 * 109.89776 * 177.94655 * 15 14 13 44 44 H 0.97001 * 119.99999 * 353.66198 * 20 19 17 45 45 H 1.09001 * 108.15893 * 213.03183 * 25 16 15 46 46 H 1.09000 * 108.16547 * 329.60142 * 25 16 15 47 47 H 1.08002 * 119.61277 * 180.25407 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2018 0.0000 4 6 3.5763 1.1907 0.0062 5 6 4.2266 -0.0341 0.0013 6 6 5.7322 -0.0986 0.0028 7 6 6.2355 -0.1204 -1.4175 8 8 5.4490 -0.0873 -2.3402 9 7 7.5595 -0.1777 -1.6624 10 6 8.0488 -0.1983 -3.0431 11 1 7.3533 -0.7624 -3.6646 12 6 9.4403 -0.8765 -3.0845 13 6 10.1902 -0.4803 -4.3232 14 6 11.1188 0.6498 -3.8908 15 6 10.5312 1.9848 -3.9972 16 7 9.2942 2.0036 -3.1460 17 6 9.2615 2.7243 -1.9820 18 1 8.3352 2.8268 -1.4362 19 6 10.4190 3.3229 -1.5036 20 7 11.5665 2.6814 -1.5676 21 14 10.3478 5.0389 -0.7691 22 1 11.7076 5.4481 -0.3346 23 1 9.8454 5.9937 -1.7895 24 1 9.4338 5.0389 0.4014 25 6 8.1495 1.2500 -3.5690 26 6 3.4766 -1.1947 0.0009 27 7 2.1587 -1.1462 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6507 2.1373 -0.0008 32 1 4.1365 2.1141 0.0108 33 1 6.0566 -1.0032 0.5172 34 1 6.1327 0.7752 0.5169 35 1 8.1886 -0.2045 -0.9245 36 1 9.3121 -1.9588 -3.0737 37 1 10.0120 -0.5744 -2.2071 38 1 9.4973 -0.1279 -5.0872 39 1 10.7708 -1.3220 -4.7008 40 1 12.0161 0.6162 -4.5087 41 1 11.4074 0.4802 -2.8536 42 1 10.2697 2.1924 -5.0348 43 1 11.2393 2.7315 -3.6377 44 1 11.5900 1.7578 -1.8631 45 1 7.2544 1.7846 -3.2510 46 1 8.1489 1.2156 -4.6584 47 1 3.9755 -2.1525 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034524219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:44 Heat of formation + Delta-G solvation = 20.500016 kcal Electronic energy + Delta-G solvation = -27158.778553 eV Core-core repulsion = 23535.040531 eV Total energy + Delta-G solvation = -3623.738022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45277 -39.37898 -37.94792 -34.54688 -33.96560 -33.31183 -32.29722 -31.26785 -30.46552 -29.43103 -26.47269 -25.70170 -24.16349 -23.54217 -22.84298 -21.70468 -20.58060 -19.76260 -19.27853 -17.14690 -16.82413 -16.68308 -16.32621 -15.77677 -15.21250 -14.94490 -14.65394 -14.46490 -14.39637 -13.68300 -13.66333 -13.42190 -13.23597 -13.01920 -12.74196 -12.50333 -12.36206 -12.34650 -12.17739 -12.08256 -11.83842 -11.52518 -11.07887 -10.89035 -10.61958 -10.41974 -10.19437 -10.06331 -9.84746 -9.82843 -9.76449 -9.53256 -9.48184 -9.42314 -8.74973 -8.70400 -8.17640 -6.99202 -6.20963 -3.05812 1.07428 1.31201 3.00492 3.46496 3.52568 3.55496 3.70800 3.90870 4.25411 4.57405 4.66524 4.70016 4.90225 4.99412 5.11502 5.14353 5.19530 5.26299 5.29570 5.38861 5.42392 5.44046 5.49018 5.57009 5.69023 5.75147 5.89698 5.92502 5.97049 6.00266 6.11884 6.22740 6.28335 6.32158 6.36289 6.57268 6.66433 6.66834 6.70564 6.83558 6.87929 7.08166 7.20566 7.22197 7.92314 7.97661 8.00637 8.48978 8.64568 9.04290 9.81996 10.27402 11.09443 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003593 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.673557 B = 7790.593729 C = 9057.660341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.117 3.883 3 C -0.170 4.170 4 C -0.057 4.057 5 C -0.113 4.113 6 C -0.101 4.101 7 C 0.513 3.487 8 O -0.548 6.548 9 N -0.703 5.703 10 C 0.115 3.885 11 H 0.074 0.926 12 C -0.111 4.111 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.129 3.871 16 N -0.587 5.587 17 C -0.352 4.352 18 H 0.063 0.937 19 C -0.016 4.016 20 N -0.901 5.901 21 Si 1.035 2.965 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.155 3.845 26 C 0.115 3.885 27 N -0.486 5.486 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.400 0.600 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.023 0.977 43 H 0.094 0.906 44 H 0.273 0.727 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -6.826 2.756 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.020 4.020 3 C -0.190 4.190 4 C -0.083 4.083 5 C -0.115 4.115 6 C -0.142 4.142 7 C 0.298 3.702 8 O -0.427 6.427 9 N -0.353 5.353 10 C 0.007 3.993 11 H 0.092 0.908 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.174 4.174 15 C 0.005 3.995 16 N -0.308 5.308 17 C -0.480 4.480 18 H 0.081 0.919 19 C -0.218 4.218 20 N -0.543 5.543 21 Si 0.865 3.135 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.223 1.223 25 C 0.024 3.976 26 C -0.042 4.042 27 N -0.196 5.196 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.635 -6.303 2.728 13.511 hybrid contribution -0.009 -0.461 -0.148 0.484 sum -11.644 -6.764 2.580 13.711 Atomic orbital electron populations 1.20677 0.89081 1.03330 1.02781 1.21244 0.96887 0.88508 0.95384 1.21896 0.94741 0.99181 1.03192 1.21491 0.94399 0.97982 0.94461 1.20293 0.95410 0.94474 1.01338 1.20612 0.92000 1.05517 0.96021 1.20268 0.82645 0.76640 0.90597 1.90685 1.55534 1.50348 1.46095 1.45986 1.06358 1.73417 1.09511 1.22753 0.93996 1.00402 0.82144 0.90839 1.21661 0.95738 0.97994 0.99534 1.20943 0.98512 0.98196 0.97218 1.21090 0.97573 0.96904 1.01836 1.20592 0.89974 0.96156 0.92760 1.44355 1.10532 1.52663 1.23292 1.19862 0.96528 1.28670 1.02937 0.91943 1.25385 0.92125 1.04542 0.99772 1.70874 1.28536 1.12512 1.42393 0.83965 0.75393 0.78382 0.75746 1.21368 1.22352 1.22286 1.20596 0.91351 0.89571 0.96081 1.22503 0.89187 0.97741 0.94748 1.67482 1.09749 1.29375 1.12972 0.90646 0.90850 0.90634 0.84947 0.84800 0.88020 0.87609 0.76628 0.93700 0.90995 0.91788 0.92636 0.94206 0.91043 0.95855 0.88760 0.91377 0.94192 0.94603 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.17 36.00 0.37 -0.54 16 2 C 0.12 1.47 6.78 -82.59 -0.56 0.91 16 3 C -0.17 -2.05 9.75 -39.44 -0.38 -2.43 16 4 C -0.06 -0.76 9.86 -39.27 -0.39 -1.14 16 5 C -0.11 -1.53 4.39 -104.48 -0.46 -1.99 16 6 C -0.10 -1.27 5.86 -29.04 -0.17 -1.44 16 7 C 0.51 8.47 7.63 -10.99 -0.08 8.39 16 8 O -0.55 -11.06 15.70 5.56 0.09 -10.97 16 9 N -0.70 -11.61 5.08 -52.15 -0.26 -11.88 16 10 C 0.11 2.04 2.91 -66.22 -0.19 1.85 16 11 H 0.07 1.34 7.58 -51.93 -0.39 0.94 16 12 C -0.11 -1.82 5.23 -27.19 -0.14 -1.97 16 13 C -0.11 -1.80 5.76 -28.41 -0.16 -1.96 16 14 C -0.13 -2.56 4.96 -30.19 -0.15 -2.71 16 15 C 0.13 2.82 5.22 -5.21 -0.03 2.80 16 16 N -0.59 -13.52 2.62 -175.40 -0.46 -13.98 16 17 C -0.35 -9.03 9.46 -15.06 -0.14 -9.17 16 18 H 0.06 1.66 8.05 -52.48 -0.42 1.23 16 19 C -0.02 -0.42 4.53 -17.43 -0.08 -0.50 16 20 N -0.90 -24.59 11.99 55.49 0.67 -23.92 16 21 Si 1.03 24.00 30.05 -169.99 -5.11 18.89 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.30 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.15 3.20 4.74 -4.93 -0.02 3.17 16 26 C 0.12 1.57 10.86 -17.55 -0.19 1.38 16 27 N -0.49 -6.94 10.27 -9.47 -0.10 -7.04 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 35 H 0.40 6.22 8.44 -40.82 -0.34 5.87 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.32 6.58 -51.93 -0.34 0.98 16 38 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.52 4.65 -51.93 -0.24 1.27 16 42 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 43 H 0.09 2.35 5.61 -51.92 -0.29 2.06 16 44 H 0.27 7.23 4.95 -40.82 -0.20 7.02 16 45 H 0.04 0.92 7.80 -51.93 -0.41 0.52 16 46 H 0.04 0.71 6.89 -51.93 -0.36 0.36 16 47 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.05 369.24 -9.59 -40.64 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.19 Total: 8.03 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.79 Total: -5.34 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.16 Total: -56.82 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.11 Total: 18.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.05 -9.59 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034524219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.142 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds