Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38232 * 119.61356 * 2 1 4 4 C 1.38634 * 119.15657 * 179.70445 * 3 2 1 5 5 C 1.38673 * 118.42220 * 0.51783 * 4 3 2 6 6 C 1.50699 * 120.42042 * 179.78284 * 5 4 3 7 7 C 1.50698 * 109.47159 * 269.71799 * 6 5 4 8 8 O 1.21282 * 120.00078 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00034 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.35805 * 324.71975 * 10 9 7 12 12 C 1.54845 * 109.35943 * 204.99615 * 10 9 7 13 13 C 1.50121 * 110.81445 * 201.06155 * 12 10 9 14 14 C 1.52527 * 105.41433 * 97.68551 * 13 12 10 15 15 C 1.46238 * 114.27438 * 270.58765 * 14 13 12 16 16 N 1.50164 * 107.53002 * 58.41187 * 15 14 13 17 17 C 1.36940 * 120.53765 * 109.56644 * 16 15 14 18 18 H 1.08004 * 120.00183 * 172.84646 * 17 16 15 19 19 C 1.38815 * 119.99854 * 352.84170 * 17 16 15 20 20 N 1.31620 * 119.99900 * 319.29777 * 19 17 16 21 21 Si 1.86797 * 119.99615 * 139.29920 * 19 17 16 22 22 H 1.48504 * 109.46872 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.47197 * 299.99684 * 21 19 17 24 24 H 1.48504 * 109.47341 * 60.00223 * 21 19 17 25 25 C 1.43430 * 118.92544 * 289.83407 * 16 15 14 26 26 C 1.38185 * 119.16057 * 359.49866 * 5 4 3 27 27 N 1.31854 * 119.62249 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47179 * 270.02261 * 1 2 3 29 29 H 1.08997 * 109.47358 * 30.02221 * 1 2 3 30 30 H 1.09005 * 109.47409 * 150.02192 * 1 2 3 31 31 H 1.07991 * 120.42439 * 359.95369 * 3 2 1 32 32 H 1.08003 * 120.78968 * 180.26989 * 4 3 2 33 33 H 1.09001 * 109.46901 * 149.71201 * 6 5 4 34 34 H 1.09005 * 109.46747 * 29.71938 * 6 5 4 35 35 H 0.97001 * 120.00173 * 359.97438 * 9 7 6 36 36 H 1.08995 * 109.20678 * 80.72016 * 12 10 9 37 37 H 1.09000 * 109.17081 * 321.38192 * 12 10 9 38 38 H 1.08998 * 110.25305 * 338.70962 * 13 12 10 39 39 H 1.09002 * 110.37182 * 216.71684 * 13 12 10 40 40 H 1.09004 * 108.51900 * 149.35009 * 14 13 12 41 41 H 1.08994 * 108.39931 * 31.74574 * 14 13 12 42 42 H 1.08996 * 109.85131 * 298.89823 * 15 14 13 43 43 H 1.09009 * 109.89776 * 177.94655 * 15 14 13 44 44 H 0.97001 * 119.99999 * 353.66198 * 20 19 17 45 45 H 1.09001 * 108.15893 * 213.03183 * 25 16 15 46 46 H 1.09000 * 108.16547 * 329.60142 * 25 16 15 47 47 H 1.08002 * 119.61277 * 180.25407 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.2018 0.0000 4 6 3.5763 1.1907 0.0062 5 6 4.2266 -0.0341 0.0013 6 6 5.7322 -0.0986 0.0028 7 6 6.2355 -0.1204 -1.4175 8 8 5.4490 -0.0873 -2.3402 9 7 7.5595 -0.1777 -1.6624 10 6 8.0488 -0.1983 -3.0431 11 1 7.3533 -0.7624 -3.6646 12 6 9.4403 -0.8765 -3.0845 13 6 10.1902 -0.4803 -4.3232 14 6 11.1188 0.6498 -3.8908 15 6 10.5312 1.9848 -3.9972 16 7 9.2942 2.0036 -3.1460 17 6 9.2615 2.7243 -1.9820 18 1 8.3352 2.8268 -1.4362 19 6 10.4190 3.3229 -1.5036 20 7 11.5665 2.6814 -1.5676 21 14 10.3478 5.0389 -0.7691 22 1 11.7076 5.4481 -0.3346 23 1 9.8454 5.9937 -1.7895 24 1 9.4338 5.0389 0.4014 25 6 8.1495 1.2500 -3.5690 26 6 3.4766 -1.1947 0.0009 27 7 2.1587 -1.1462 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6507 2.1373 -0.0008 32 1 4.1365 2.1141 0.0108 33 1 6.0566 -1.0032 0.5172 34 1 6.1327 0.7752 0.5169 35 1 8.1886 -0.2045 -0.9245 36 1 9.3121 -1.9588 -3.0737 37 1 10.0120 -0.5744 -2.2071 38 1 9.4973 -0.1279 -5.0872 39 1 10.7708 -1.3220 -4.7008 40 1 12.0161 0.6162 -4.5087 41 1 11.4074 0.4802 -2.8536 42 1 10.2697 2.1924 -5.0348 43 1 11.2393 2.7315 -3.6377 44 1 11.5900 1.7578 -1.8631 45 1 7.2544 1.7846 -3.2510 46 1 8.1489 1.2156 -4.6584 47 1 3.9755 -2.1525 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034524219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = 2.362387 kcal Electronic energy + Delta-G solvation = -27159.565059 eV Core-core repulsion = 23535.040531 eV Total energy + Delta-G solvation = -3624.524528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51261 -40.71218 -39.46410 -36.09836 -35.01448 -34.88757 -33.24096 -33.01123 -31.90463 -30.54425 -27.93718 -27.00347 -25.62121 -24.67021 -24.40848 -22.80488 -22.09671 -21.11196 -20.81487 -18.99987 -18.08646 -17.69733 -17.49222 -17.01595 -16.61407 -16.29169 -16.12402 -15.78400 -15.55110 -15.39030 -15.18649 -14.72972 -14.33395 -14.21880 -14.00422 -13.84929 -13.76481 -13.49179 -13.22130 -13.19445 -12.98617 -12.75886 -12.55662 -12.45399 -12.39977 -12.13748 -11.92589 -11.73623 -11.54322 -11.28207 -11.17851 -10.97153 -10.69251 -10.45111 -10.33634 -9.95646 -9.71451 -8.84491 -8.24795 -5.05232 0.10781 0.32274 1.59882 1.66301 1.70887 1.85392 2.32650 2.68895 2.85727 3.16341 3.37117 3.46873 3.68227 3.79856 3.80731 3.98792 3.99016 4.02547 4.05203 4.26296 4.36072 4.41287 4.44949 4.48349 4.53844 4.65948 4.69267 4.70509 4.75614 4.79107 4.85610 4.93180 5.07296 5.12973 5.15453 5.16790 5.18940 5.30877 5.31974 5.39358 5.49216 5.61911 5.67884 5.78024 5.93864 6.51104 6.65882 7.01024 7.11724 7.33097 7.88857 8.34761 9.08050 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003593 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.673557 B = 7790.593729 C = 9057.660341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.105 3.895 3 C -0.173 4.173 4 C -0.075 4.075 5 C -0.127 4.127 6 C -0.091 4.091 7 C 0.511 3.489 8 O -0.587 6.587 9 N -0.702 5.702 10 C 0.123 3.877 11 H 0.074 0.926 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.127 4.127 15 C 0.131 3.869 16 N -0.598 5.598 17 C -0.349 4.349 18 H 0.048 0.952 19 C -0.055 4.055 20 N -0.926 5.926 21 Si 1.078 2.922 22 H -0.296 1.296 23 H -0.296 1.296 24 H -0.281 1.281 25 C 0.159 3.841 26 C 0.102 3.898 27 N -0.510 5.510 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.271 0.729 45 H 0.009 0.991 46 H 0.042 0.958 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -7.554 2.954 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.033 4.033 3 C -0.193 4.193 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.131 4.131 7 C 0.299 3.701 8 O -0.468 6.468 9 N -0.351 5.351 10 C 0.015 3.985 11 H 0.092 0.908 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.166 4.166 15 C 0.008 3.992 16 N -0.320 5.320 17 C -0.478 4.478 18 H 0.066 0.934 19 C -0.254 4.254 20 N -0.569 5.569 21 Si 0.906 3.094 22 H -0.222 1.222 23 H -0.224 1.224 24 H -0.208 1.208 25 C 0.030 3.970 26 C -0.054 4.054 27 N -0.220 5.220 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.362 -7.049 2.934 14.530 hybrid contribution 0.148 -0.207 -0.274 0.373 sum -12.214 -7.255 2.660 14.454 Atomic orbital electron populations 1.20767 0.86673 1.04126 1.04029 1.21865 0.98636 0.88280 0.94477 1.22223 0.94488 1.00269 1.02310 1.21754 0.95309 0.98207 0.94772 1.20413 0.95795 0.94702 1.01977 1.20603 0.91550 1.07499 0.93454 1.20925 0.82108 0.75207 0.91859 1.90663 1.56366 1.52061 1.47734 1.45986 1.06731 1.73205 1.09210 1.22496 0.95109 0.98079 0.82851 0.90820 1.21576 0.94181 0.99376 0.98858 1.20936 0.98148 0.98002 0.97036 1.20925 0.98647 0.96234 1.00789 1.20537 0.88950 0.97084 0.92659 1.44391 1.11486 1.53502 1.22627 1.19861 0.95612 1.28967 1.03370 0.93377 1.26210 0.92057 1.06452 1.00730 1.70911 1.29068 1.12786 1.44141 0.83332 0.75044 0.75307 0.75666 1.22205 1.22369 1.20753 1.20568 0.89186 0.90825 0.96451 1.22797 0.89364 0.98481 0.94793 1.67529 1.10139 1.30427 1.13869 0.89053 0.88918 0.90959 0.82344 0.84388 0.84849 0.86701 0.75981 0.90997 0.92913 0.91692 0.89586 0.92714 0.93361 0.94761 0.92027 0.91616 0.97226 0.93945 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.17 71.23 0.72 -0.86 16 2 C 0.10 2.51 6.78 42.55 0.29 2.80 16 3 C -0.17 -3.96 9.75 22.36 0.22 -3.74 16 4 C -0.07 -1.92 9.86 22.47 0.22 -1.70 16 5 C -0.13 -3.34 4.39 -19.77 -0.09 -3.43 16 6 C -0.09 -2.18 5.86 29.10 0.17 -2.01 16 7 C 0.51 16.62 7.63 87.66 0.67 17.29 16 8 O -0.59 -23.73 15.70 -3.04 -0.05 -23.78 16 9 N -0.70 -22.72 5.08 -437.29 -2.22 -24.94 16 10 C 0.12 4.25 2.91 46.10 0.13 4.38 16 11 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 12 C -0.10 -3.14 5.23 30.30 0.16 -2.99 16 13 C -0.10 -3.11 5.76 29.51 0.17 -2.94 16 14 C -0.13 -4.68 4.96 28.36 0.14 -4.54 16 15 C 0.13 5.73 5.22 83.58 0.44 6.17 16 16 N -0.60 -27.66 2.62 -708.84 -1.86 -29.52 16 17 C -0.35 -18.09 9.46 84.03 0.80 -17.29 16 18 H 0.05 2.59 8.05 -2.91 -0.02 2.57 16 19 C -0.06 -2.93 4.53 84.86 0.38 -2.54 16 20 N -0.93 -51.08 11.99 21.65 0.26 -50.82 16 21 Si 1.08 48.96 30.05 68.60 2.06 51.02 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.16 6.59 4.74 87.43 0.41 7.00 16 26 C 0.10 2.72 10.86 84.67 0.92 3.64 16 27 N -0.51 -14.22 10.27 -183.89 -1.89 -16.11 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.16 2.62 8.06 -2.92 -0.02 2.60 16 32 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.13 2.31 8.09 -2.39 -0.02 2.29 16 34 H 0.11 2.56 8.09 -2.38 -0.02 2.54 16 35 H 0.41 12.29 8.44 -92.71 -0.78 11.51 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.87 6.58 -2.39 -0.02 1.85 16 38 H 0.06 1.97 6.28 -2.39 -0.02 1.95 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.05 2.03 4.65 -2.39 -0.01 2.02 16 42 H 0.03 1.39 8.13 -2.39 -0.02 1.38 16 43 H 0.06 3.11 5.61 -2.38 -0.01 3.10 16 44 H 0.27 14.57 4.95 -92.71 -0.46 14.11 16 45 H 0.01 0.44 7.80 -2.39 -0.02 0.43 16 46 H 0.04 1.67 6.89 -2.39 -0.02 1.65 16 47 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -67.76 369.24 2.57 -65.19 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.50 Total: 29.70 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.76 Total: -0.75 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.71 Total: -121.38 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.06 Total: 51.02 kcal Total: -67.76 2.57 -65.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034524219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.552 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds