Wall clock time and date at job start Tue Mar 31 2020 11:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38146 * 119.54862 * 2 1 4 4 C 1.39824 * 119.00147 * 180.02562 * 3 2 1 5 5 C 1.48137 * 120.92568 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99950 * 28.16839 * 5 4 3 7 7 N 1.34778 * 120.00475 * 208.16470 * 5 4 3 8 8 C 1.46928 * 120.62789 * 6.26433 * 7 5 4 9 9 C 1.53190 * 108.76395 * 126.36071 * 8 7 5 10 10 C 1.53040 * 109.31293 * 54.65988 * 9 8 7 11 11 H 1.09003 * 109.46056 * 58.62298 * 10 9 8 12 12 N 1.46492 * 109.46256 * 178.60020 * 10 9 8 13 13 C 1.36939 * 119.99985 * 275.02744 * 12 10 9 14 14 H 1.08002 * 119.99781 * 359.97438 * 13 12 10 15 15 C 1.38818 * 120.00206 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99719 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47293 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46966 * 239.99626 * 17 15 13 20 20 H 1.48502 * 109.47421 * 119.99721 * 17 15 13 21 21 C 1.53049 * 109.52570 * 298.61195 * 10 9 8 22 22 C 1.46922 * 120.63482 * 186.24420 * 7 5 4 23 23 H 1.09002 * 109.58621 * 113.84028 * 22 7 5 24 24 C 1.53004 * 109.58647 * 353.41661 * 22 7 5 25 25 C 1.39820 * 118.14949 * 0.25212 * 4 3 2 26 26 C 1.38152 * 119.00376 * 359.48128 * 25 4 3 27 27 C 1.50702 * 119.55132 * 180.26533 * 26 25 4 28 28 N 1.31810 * 120.89451 * 0.53567 * 26 25 4 29 29 H 1.08998 * 109.47526 * 89.99764 * 1 2 3 30 30 H 1.09003 * 109.46753 * 209.99489 * 1 2 3 31 31 H 1.09000 * 109.47355 * 329.99139 * 1 2 3 32 32 H 1.07997 * 120.50506 * 0.03178 * 3 2 1 33 33 H 1.08994 * 109.58771 * 246.16006 * 8 7 5 34 34 H 1.09000 * 109.58705 * 6.58204 * 8 7 5 35 35 H 1.09003 * 109.51032 * 294.69972 * 9 8 7 36 36 H 1.08998 * 109.48476 * 174.59879 * 9 8 7 37 37 H 0.97006 * 120.00150 * 95.02308 * 12 10 9 38 38 H 0.97004 * 120.00086 * 359.97438 * 16 15 13 39 39 H 1.08990 * 109.49846 * 181.32026 * 21 10 9 40 40 H 1.09002 * 109.49178 * 301.42400 * 21 10 9 41 41 H 1.08997 * 109.46832 * 303.57493 * 24 22 7 42 42 H 1.09004 * 109.46755 * 63.57877 * 24 22 7 43 43 H 1.08996 * 109.47014 * 183.57766 * 24 22 7 44 44 H 1.08002 * 120.49597 * 179.72578 * 25 4 3 45 45 H 1.08996 * 109.47415 * 270.26362 * 27 26 25 46 46 H 1.08999 * 109.47089 * 30.26516 * 27 26 25 47 47 H 1.08999 * 109.46801 * 150.25579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.8860 3.4545 0.4956 7 7 5.5891 2.4894 -0.5525 8 6 6.1205 1.3266 -1.2767 9 6 6.5679 1.7767 -2.6709 10 6 7.5560 2.9375 -2.5352 11 1 8.4120 2.6181 -1.9407 12 7 8.0117 3.3487 -3.8654 13 6 9.0590 2.6985 -4.4616 14 1 9.5493 1.8828 -3.9510 15 6 9.4912 3.0884 -5.7218 16 7 8.8940 4.0828 -6.3438 17 14 10.9203 2.2020 -6.5348 18 1 11.4145 1.1297 -5.6342 19 1 12.0158 3.1687 -6.8005 20 1 10.4671 1.6031 -7.8160 21 6 6.8675 4.1173 -1.8449 22 6 6.4231 3.6938 -0.4413 23 1 7.2994 3.4764 0.1694 24 6 5.6129 4.8211 0.2020 25 6 4.2343 -0.0506 -0.0065 26 6 3.4739 -1.2041 -0.0006 27 6 4.1594 -2.5462 -0.0009 28 7 2.1571 -1.1466 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6492 2.1376 0.0005 33 1 6.9720 0.9161 -0.7342 34 1 5.3436 0.5677 -1.3696 35 1 5.7000 2.1029 -3.2442 36 1 7.0517 0.9453 -3.1836 37 1 7.5715 4.0815 -4.3238 38 1 8.1516 4.5429 -5.9218 39 1 7.5644 4.9518 -1.7695 40 1 5.9968 4.4210 -2.4260 41 1 4.7085 4.9965 -0.3804 42 1 5.3411 4.5384 1.2191 43 1 6.2121 5.7313 0.2257 44 1 5.3129 -0.1051 -0.0116 45 1 4.3243 -2.8698 -1.0285 46 1 5.1175 -2.4649 0.5126 47 1 3.5324 -3.2745 0.5134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044620978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:32 Heat of formation + Delta-G solvation = 33.272036 kcal Electronic energy + Delta-G solvation = -27115.688870 eV Core-core repulsion = 23492.504685 eV Total energy + Delta-G solvation = -3623.184185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27537 -39.87157 -37.55535 -34.96390 -34.20993 -33.78211 -32.14257 -31.79253 -29.40248 -29.13338 -27.34081 -26.91245 -24.80459 -23.77649 -23.20662 -22.17686 -21.52901 -20.29716 -19.18548 -17.36673 -17.26010 -16.66809 -16.34283 -15.74997 -15.53995 -14.98586 -14.81292 -14.73163 -14.15722 -13.88243 -13.68853 -13.55408 -13.44481 -13.41484 -13.26707 -12.82669 -12.66876 -12.40357 -12.31187 -12.20639 -12.10245 -11.97068 -11.58375 -11.44847 -10.92320 -10.87998 -10.60586 -10.48946 -10.19497 -10.08115 -9.96358 -9.87931 -9.26733 -9.12541 -9.03855 -8.89203 -8.56341 -7.09679 -6.15078 -3.15783 0.56687 0.79424 2.65155 2.84252 3.47853 3.50710 3.54541 3.63492 3.87654 4.13681 4.38272 4.60657 4.67112 4.76351 4.88067 5.01527 5.03366 5.14017 5.16935 5.22169 5.23822 5.29080 5.34728 5.35697 5.36533 5.43896 5.57684 5.63422 5.67950 5.75459 5.77637 5.80845 5.82738 5.89445 6.00006 6.07864 6.22365 6.29972 6.32912 6.37771 6.39591 6.62231 6.75699 6.90151 7.33721 7.70294 7.75685 8.04140 8.70533 9.16926 10.03438 10.18443 11.33232 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.003339 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.343574 B = 8382.713955 C = 9442.753623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 C -0.126 4.126 4 C -0.075 4.075 5 C 0.557 3.443 6 O -0.528 6.528 7 N -0.592 5.592 8 C 0.083 3.917 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.049 0.951 12 N -0.735 5.735 13 C -0.333 4.333 14 H 0.065 0.935 15 C -0.045 4.045 16 N -0.944 5.944 17 Si 1.085 2.915 18 H -0.295 1.295 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.136 4.136 22 C 0.148 3.852 23 H 0.074 0.926 24 C -0.135 4.135 25 C -0.160 4.160 26 C 0.128 3.872 27 C -0.105 4.105 28 N -0.474 5.474 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.367 0.633 38 H 0.256 0.744 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.154 0.846 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.374 -9.381 15.819 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 C -0.147 4.147 4 C -0.086 4.086 5 C 0.345 3.655 6 O -0.406 6.406 7 N -0.324 5.324 8 C -0.039 4.039 9 C -0.191 4.191 10 C 0.074 3.926 11 H 0.067 0.933 12 N -0.377 5.377 13 C -0.464 4.464 14 H 0.083 0.917 15 C -0.242 4.242 16 N -0.589 5.589 17 Si 0.916 3.084 18 H -0.221 1.221 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.176 4.176 22 C 0.045 3.955 23 H 0.092 0.908 24 C -0.193 4.193 25 C -0.180 4.180 26 C -0.010 4.010 27 C -0.162 4.162 28 N -0.185 5.185 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.172 0.828 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.954 -9.829 14.802 21.415 hybrid contribution -0.496 0.989 1.044 1.521 sum -12.450 -8.840 15.846 22.006 Atomic orbital electron populations 1.20725 0.88300 1.03643 1.03353 1.21245 0.97187 0.87688 0.94874 1.22025 0.93111 0.99958 0.99557 1.20457 0.94493 0.93881 0.99722 1.18225 0.81109 0.87396 0.78793 1.90831 1.69311 1.33729 1.46686 1.48090 1.15274 1.16016 1.53039 1.22634 0.99375 0.87944 0.93979 1.22674 1.00775 1.01718 0.93974 1.20105 0.93616 0.91191 0.87699 0.93280 1.42447 1.39032 1.40459 1.15746 1.20084 1.09602 1.14713 1.01957 0.91661 1.25775 1.04253 0.99757 0.94452 1.70815 1.24606 1.23253 1.40202 0.83159 0.75087 0.74763 0.75411 1.22102 1.22002 1.22009 1.22325 1.00891 0.99739 0.94596 1.21371 0.92805 0.84228 0.97099 0.90770 1.22216 0.99369 0.95763 1.01909 1.22614 1.02290 0.91977 1.01130 1.21265 0.89175 0.95743 0.94770 1.20747 0.99849 0.92074 1.03536 1.67213 1.09697 1.29534 1.12056 0.90162 0.90297 0.90466 0.83858 0.90973 0.88480 0.92335 0.90410 0.80022 0.93279 0.90543 0.91843 0.91046 0.91343 0.93622 0.82849 0.89972 0.90434 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.01 0.37 -0.42 16 2 C 0.13 1.40 6.78 -82.63 -0.56 0.84 16 3 C -0.13 -1.48 9.32 -39.02 -0.36 -1.85 16 4 C -0.07 -0.94 5.52 -104.65 -0.58 -1.52 16 5 C 0.56 8.02 7.42 -12.20 -0.09 7.93 16 6 O -0.53 -8.61 12.16 5.35 0.07 -8.54 16 7 N -0.59 -8.18 2.97 -166.22 -0.49 -8.67 16 8 C 0.08 1.06 4.74 -3.71 -0.02 1.04 16 9 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 10 C 0.18 3.48 2.73 -67.89 -0.19 3.30 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 N -0.74 -17.84 5.12 -53.38 -0.27 -18.12 16 13 C -0.33 -9.05 9.93 -15.06 -0.15 -9.20 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 16 N -0.94 -28.88 13.70 55.49 0.76 -28.12 16 17 Si 1.08 25.55 29.92 -169.99 -5.09 20.47 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.14 -2.24 4.84 -26.61 -0.13 -2.37 16 22 C 0.15 2.10 3.49 -67.60 -0.24 1.86 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.14 -1.90 7.59 37.16 0.28 -1.62 16 25 C -0.16 -1.74 7.17 -39.02 -0.28 -2.02 16 26 C 0.13 1.37 6.78 -82.63 -0.56 0.81 16 27 C -0.10 -0.79 10.16 36.01 0.37 -0.42 16 28 N -0.47 -5.58 10.16 -5.79 -0.06 -5.64 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.14 1.57 7.97 -52.49 -0.42 1.16 16 33 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 34 H 0.10 1.12 4.04 -51.93 -0.21 0.91 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.37 9.34 6.63 -40.82 -0.27 9.07 16 38 H 0.26 7.73 6.77 -40.82 -0.28 7.46 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 42 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.15 1.42 5.37 -52.49 -0.28 1.14 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -32.70 368.93 -9.18 -41.88 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.27 Total: 8.85 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.38 Total: -7.67 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.07 Total: -60.54 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.09 Total: 20.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.70 -9.18 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044620978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.152 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds