Wall clock time and date at job start Tue Mar 31 2020 11:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38146 * 119.54862 * 2 1 4 4 C 1.39824 * 119.00147 * 180.02562 * 3 2 1 5 5 C 1.48137 * 120.92568 * 179.97438 * 4 3 2 6 6 O 1.21515 * 119.99950 * 28.16839 * 5 4 3 7 7 N 1.34778 * 120.00475 * 208.16470 * 5 4 3 8 8 C 1.46928 * 120.62789 * 6.26433 * 7 5 4 9 9 C 1.53190 * 108.76395 * 126.36071 * 8 7 5 10 10 C 1.53040 * 109.31293 * 54.65988 * 9 8 7 11 11 H 1.09003 * 109.46056 * 58.62298 * 10 9 8 12 12 N 1.46492 * 109.46256 * 178.60020 * 10 9 8 13 13 C 1.36939 * 119.99985 * 275.02744 * 12 10 9 14 14 H 1.08002 * 119.99781 * 359.97438 * 13 12 10 15 15 C 1.38818 * 120.00206 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99719 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00039 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47293 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46966 * 239.99626 * 17 15 13 20 20 H 1.48502 * 109.47421 * 119.99721 * 17 15 13 21 21 C 1.53049 * 109.52570 * 298.61195 * 10 9 8 22 22 C 1.46922 * 120.63482 * 186.24420 * 7 5 4 23 23 H 1.09002 * 109.58621 * 113.84028 * 22 7 5 24 24 C 1.53004 * 109.58647 * 353.41661 * 22 7 5 25 25 C 1.39820 * 118.14949 * 0.25212 * 4 3 2 26 26 C 1.38152 * 119.00376 * 359.48128 * 25 4 3 27 27 C 1.50702 * 119.55132 * 180.26533 * 26 25 4 28 28 N 1.31810 * 120.89451 * 0.53567 * 26 25 4 29 29 H 1.08998 * 109.47526 * 89.99764 * 1 2 3 30 30 H 1.09003 * 109.46753 * 209.99489 * 1 2 3 31 31 H 1.09000 * 109.47355 * 329.99139 * 1 2 3 32 32 H 1.07997 * 120.50506 * 0.03178 * 3 2 1 33 33 H 1.08994 * 109.58771 * 246.16006 * 8 7 5 34 34 H 1.09000 * 109.58705 * 6.58204 * 8 7 5 35 35 H 1.09003 * 109.51032 * 294.69972 * 9 8 7 36 36 H 1.08998 * 109.48476 * 174.59879 * 9 8 7 37 37 H 0.97006 * 120.00150 * 95.02308 * 12 10 9 38 38 H 0.97004 * 120.00086 * 359.97438 * 16 15 13 39 39 H 1.08990 * 109.49846 * 181.32026 * 21 10 9 40 40 H 1.09002 * 109.49178 * 301.42400 * 21 10 9 41 41 H 1.08997 * 109.46832 * 303.57493 * 24 22 7 42 42 H 1.09004 * 109.46755 * 63.57877 * 24 22 7 43 43 H 1.08996 * 109.47014 * 183.57766 * 24 22 7 44 44 H 1.08002 * 120.49597 * 179.72578 * 25 4 3 45 45 H 1.08996 * 109.47415 * 270.26362 * 27 26 25 46 46 H 1.08999 * 109.47089 * 30.26516 * 27 26 25 47 47 H 1.08999 * 109.46801 * 150.25579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5865 1.1884 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.8860 3.4545 0.4956 7 7 5.5891 2.4894 -0.5525 8 6 6.1205 1.3266 -1.2767 9 6 6.5679 1.7767 -2.6709 10 6 7.5560 2.9375 -2.5352 11 1 8.4120 2.6181 -1.9407 12 7 8.0117 3.3487 -3.8654 13 6 9.0590 2.6985 -4.4616 14 1 9.5493 1.8828 -3.9510 15 6 9.4912 3.0884 -5.7218 16 7 8.8940 4.0828 -6.3438 17 14 10.9203 2.2020 -6.5348 18 1 11.4145 1.1297 -5.6342 19 1 12.0158 3.1687 -6.8005 20 1 10.4671 1.6031 -7.8160 21 6 6.8675 4.1173 -1.8449 22 6 6.4231 3.6938 -0.4413 23 1 7.2994 3.4764 0.1694 24 6 5.6129 4.8211 0.2020 25 6 4.2343 -0.0506 -0.0065 26 6 3.4739 -1.2041 -0.0006 27 6 4.1594 -2.5462 -0.0009 28 7 2.1571 -1.1466 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 1.6492 2.1376 0.0005 33 1 6.9720 0.9161 -0.7342 34 1 5.3436 0.5677 -1.3696 35 1 5.7000 2.1029 -3.2442 36 1 7.0517 0.9453 -3.1836 37 1 7.5715 4.0815 -4.3238 38 1 8.1516 4.5429 -5.9218 39 1 7.5644 4.9518 -1.7695 40 1 5.9968 4.4210 -2.4260 41 1 4.7085 4.9965 -0.3804 42 1 5.3411 4.5384 1.2191 43 1 6.2121 5.7313 0.2257 44 1 5.3129 -0.1051 -0.0116 45 1 4.3243 -2.8698 -1.0285 46 1 5.1175 -2.4649 0.5126 47 1 3.5324 -3.2745 0.5134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044620978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:31 Heat of formation + Delta-G solvation = 13.370086 kcal Electronic energy + Delta-G solvation = -27116.551883 eV Core-core repulsion = 23492.504685 eV Total energy + Delta-G solvation = -3624.047199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28129 -40.86723 -38.89872 -36.57545 -35.25991 -34.61159 -33.85967 -32.85714 -30.85285 -30.02506 -28.55025 -27.82116 -26.09420 -25.38413 -24.53674 -23.15750 -22.58648 -21.70331 -20.31793 -19.35431 -18.24357 -17.68605 -17.29488 -16.99246 -16.68054 -16.45998 -15.98618 -15.72858 -15.62361 -15.32511 -15.05978 -14.76676 -14.54327 -14.28702 -14.11472 -14.04988 -13.55760 -13.34515 -13.27104 -13.18520 -12.96096 -12.94997 -12.79766 -12.72016 -12.58204 -12.35991 -12.14146 -12.01625 -11.84235 -11.68081 -11.21692 -10.98971 -10.84043 -10.80067 -10.20305 -9.80385 -9.73948 -9.12456 -8.37775 -5.32514 -0.35333 -0.02649 1.57449 1.59303 1.70529 1.77754 1.81520 2.63929 2.71833 3.12866 3.17244 3.41083 3.55764 3.59780 3.71465 3.83590 3.91215 3.92960 3.98971 4.10498 4.20380 4.31615 4.42354 4.43506 4.49665 4.52388 4.56572 4.62093 4.71859 4.73544 4.74836 4.82054 4.85979 4.91980 4.93205 5.01712 5.05195 5.12300 5.16228 5.22577 5.30798 5.38220 5.55922 5.62034 5.62256 6.22066 6.49385 6.88626 6.92606 7.08908 7.98600 8.12028 9.14011 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.003339 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.343574 B = 8382.713955 C = 9442.753623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.123 3.877 3 C -0.139 4.139 4 C -0.091 4.091 5 C 0.556 3.444 6 O -0.552 6.552 7 N -0.593 5.593 8 C 0.092 3.908 9 C -0.140 4.140 10 C 0.178 3.822 11 H 0.052 0.948 12 N -0.751 5.751 13 C -0.323 4.323 14 H 0.072 0.928 15 C -0.108 4.108 16 N -0.980 5.980 17 Si 1.131 2.869 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.294 1.294 21 C -0.125 4.125 22 C 0.152 3.848 23 H 0.095 0.905 24 C -0.125 4.125 25 C -0.160 4.160 26 C 0.124 3.876 27 C -0.104 4.104 28 N -0.490 5.490 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.356 0.644 38 H 0.243 0.757 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.173 0.827 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -11.544 17.337 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 C -0.159 4.159 4 C -0.102 4.102 5 C 0.345 3.655 6 O -0.432 6.432 7 N -0.325 5.325 8 C -0.030 4.030 9 C -0.181 4.181 10 C 0.070 3.930 11 H 0.070 0.930 12 N -0.392 5.392 13 C -0.454 4.454 14 H 0.090 0.910 15 C -0.299 4.299 16 N -0.629 5.629 17 Si 0.956 3.044 18 H -0.191 1.191 19 H -0.222 1.222 20 H -0.221 1.221 21 C -0.164 4.164 22 C 0.049 3.951 23 H 0.113 0.887 24 C -0.182 4.182 25 C -0.180 4.180 26 C -0.014 4.014 27 C -0.161 4.161 28 N -0.202 5.202 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.162 0.838 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.187 0.813 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.190 0.810 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.550 -12.026 16.379 23.373 hybrid contribution -0.704 1.653 0.644 1.908 sum -12.253 -10.374 17.024 23.400 Atomic orbital electron populations 1.20810 0.86256 1.04611 1.04168 1.21695 0.98634 0.87198 0.93918 1.22145 0.93098 1.00486 1.00220 1.20436 0.94810 0.93711 1.01198 1.18503 0.80991 0.87779 0.78258 1.90819 1.69750 1.34818 1.47770 1.48118 1.15235 1.16103 1.52995 1.22688 1.00924 0.87747 0.91597 1.22455 0.99104 1.00184 0.96338 1.20364 0.94370 0.92828 0.85419 0.92967 1.42704 1.38723 1.40195 1.17531 1.20432 1.09344 1.13935 1.01703 0.90969 1.27172 1.06612 1.00248 0.95889 1.70937 1.25625 1.25253 1.41041 0.82570 0.72367 0.74441 0.74994 1.19099 1.22172 1.22140 1.22179 0.99852 0.98692 0.95685 1.21347 0.93595 0.84614 0.95535 0.88728 1.22072 0.98617 0.96309 1.01208 1.22778 1.03183 0.91262 1.00795 1.21810 0.89034 0.97016 0.93535 1.20857 1.00541 0.90316 1.04380 1.67325 1.10440 1.29811 1.12606 0.89298 0.89766 0.89068 0.83821 0.88103 0.86718 0.94364 0.91282 0.81290 0.94679 0.90878 0.93448 0.93086 0.91580 0.92345 0.80997 0.89135 0.88370 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.17 71.24 0.72 -0.68 16 2 C 0.12 2.55 6.78 42.54 0.29 2.84 16 3 C -0.14 -3.18 9.32 22.63 0.21 -2.97 16 4 C -0.09 -2.18 5.52 -19.88 -0.11 -2.29 16 5 C 0.56 15.44 7.42 86.87 0.64 16.09 16 6 O -0.55 -17.86 12.16 -3.76 -0.05 -17.91 16 7 N -0.59 -15.39 2.97 -798.09 -2.37 -17.76 16 8 C 0.09 2.12 4.74 86.36 0.41 2.53 16 9 C -0.14 -4.51 5.66 30.67 0.17 -4.34 16 10 C 0.18 6.62 2.73 45.02 0.12 6.75 16 11 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 12 N -0.75 -36.77 5.12 -322.80 -1.65 -38.42 16 13 C -0.32 -17.47 9.93 84.03 0.83 -16.64 16 14 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 15 C -0.11 -6.19 5.50 84.86 0.47 -5.73 16 16 N -0.98 -61.29 13.70 21.65 0.30 -60.99 16 17 Si 1.13 51.09 29.92 68.60 2.05 53.15 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 C -0.12 -4.06 4.84 30.68 0.15 -3.91 16 22 C 0.15 4.09 3.49 44.98 0.16 4.24 16 23 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 24 C -0.12 -3.41 7.59 71.98 0.55 -2.86 16 25 C -0.16 -3.12 7.17 22.63 0.16 -2.95 16 26 C 0.12 2.36 6.78 42.54 0.29 2.64 16 27 C -0.10 -1.26 10.16 71.24 0.72 -0.53 16 28 N -0.49 -10.72 10.16 -172.23 -1.75 -12.47 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.14 3.15 7.97 -2.91 -0.02 3.13 16 33 H 0.10 1.83 8.03 -2.39 -0.02 1.81 16 34 H 0.12 2.32 4.04 -2.39 -0.01 2.31 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.36 18.74 6.63 -92.70 -0.61 18.12 16 38 H 0.24 15.22 6.77 -92.71 -0.63 14.59 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.60 6.75 -2.39 -0.02 1.58 16 42 H 0.07 1.85 6.75 -2.38 -0.02 1.84 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.17 2.57 5.37 -2.91 -0.02 2.55 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 0.78 8.08 -2.39 -0.02 0.76 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.43 368.93 2.83 -68.60 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.50 Total: 33.62 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.79 Total: -7.81 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -5.48 Total: -129.65 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.15 kcal Total: -71.43 2.83 -68.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044620978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.972 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds