Wall clock time and date at job start Tue Mar 31 2020 11:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38351 * 119.46243 * 2 1 4 4 C 1.38355 * 119.30453 * 180.02562 * 3 2 1 5 5 C 1.40019 * 118.28746 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.55789 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00497 * 231.02442 * 6 5 4 8 8 N 1.34782 * 119.99841 * 51.02701 * 6 5 4 9 9 C 1.46925 * 120.62947 * 5.05913 * 8 6 5 10 10 C 1.53197 * 108.76204 * 126.36025 * 9 8 6 11 11 C 1.53045 * 109.31232 * 54.65709 * 10 9 8 12 12 H 1.09000 * 109.45877 * 58.62281 * 11 10 9 13 13 N 1.46502 * 109.46049 * 178.59805 * 11 10 9 14 14 C 1.36936 * 119.99649 * 275.03079 * 13 11 10 15 15 H 1.08000 * 120.00438 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99622 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99897 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47139 * 89.99745 * 18 16 14 20 20 H 1.48508 * 109.47185 * 330.00157 * 18 16 14 21 21 H 1.48500 * 109.47464 * 210.00224 * 18 16 14 22 22 C 1.53032 * 109.52622 * 298.61238 * 11 10 9 23 23 C 1.46928 * 120.62896 * 185.03721 * 8 6 5 24 24 H 1.08998 * 109.58313 * 113.84491 * 23 8 6 25 25 C 1.53001 * 109.58920 * 353.41756 * 23 8 6 26 26 C 1.39518 * 118.88232 * 0.27739 * 5 4 3 27 27 C 1.50700 * 119.71538 * 179.72463 * 26 5 4 28 28 N 1.31697 * 120.56612 * 359.45030 * 26 5 4 29 29 H 1.09003 * 109.46902 * 89.99894 * 1 2 3 30 30 H 1.09002 * 109.46873 * 209.99822 * 1 2 3 31 31 H 1.09003 * 109.46725 * 329.99745 * 1 2 3 32 32 H 1.08000 * 120.34733 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.85485 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.58814 * 246.15785 * 9 8 6 35 35 H 1.08994 * 109.58630 * 6.44402 * 9 8 6 36 36 H 1.08995 * 109.51184 * 294.69727 * 10 9 8 37 37 H 1.09008 * 109.48526 * 174.59920 * 10 9 8 38 38 H 0.97001 * 119.99747 * 95.02561 * 13 11 10 39 39 H 0.96996 * 119.99908 * 0.02562 * 17 16 14 40 40 H 1.09001 * 109.49943 * 181.32009 * 22 11 10 41 41 H 1.09005 * 109.50183 * 301.41817 * 22 11 10 42 42 H 1.09001 * 109.47036 * 305.12624 * 25 23 8 43 43 H 1.08996 * 109.46829 * 65.12427 * 25 23 8 44 44 H 1.09002 * 109.47101 * 185.12675 * 25 23 8 45 45 H 1.08999 * 109.47480 * 84.25417 * 27 26 5 46 46 H 1.09003 * 109.47002 * 204.25712 * 27 26 5 47 47 H 1.09004 * 109.47425 * 324.24894 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0967 -0.0005 7 8 6.2876 -0.7839 -0.8188 8 7 6.4127 0.6083 0.9070 9 6 5.7273 1.3551 1.9706 10 6 6.3067 0.9295 3.3234 11 6 7.8258 1.1148 3.3042 12 1 8.0617 2.1583 3.0956 13 7 8.3796 0.7403 4.6078 14 6 8.4119 1.6552 5.6263 15 1 8.0295 2.6528 5.4684 16 6 8.9372 1.3005 6.8613 17 7 9.4037 0.0849 7.0535 18 14 8.9820 2.5486 8.2505 19 1 7.7257 2.4589 9.0371 20 1 9.1149 3.9150 7.6842 21 1 10.1409 2.2642 9.1343 22 6 8.4357 0.2270 2.2171 23 6 7.8805 0.6441 0.8516 24 1 8.2126 1.6551 0.6155 25 6 8.3772 -0.3260 -0.2222 26 6 3.4716 -1.2043 -0.0059 27 6 4.1627 -2.5434 -0.0122 28 7 2.1558 -1.1487 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6444 2.1381 -0.0004 33 1 4.1275 2.1264 -0.0001 34 1 5.8839 2.4240 1.8257 35 1 4.6602 1.1349 1.9423 36 1 6.0703 -0.1185 3.5072 37 1 5.8752 1.5443 4.1134 38 1 8.7234 -0.1556 4.7495 39 1 9.3808 -0.5631 6.3321 40 1 9.5196 0.3416 2.2195 41 1 8.1791 -0.8145 2.4114 42 1 7.9730 -1.3197 -0.0290 43 1 8.0461 0.0166 -1.2025 44 1 9.4662 -0.3660 -0.1999 45 1 4.4210 -2.8240 1.0089 46 1 3.4967 -3.2940 -0.4379 47 1 5.0705 -2.4811 -0.6125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044870513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:05 Heat of formation + Delta-G solvation = 19.887417 kcal Electronic energy + Delta-G solvation = -27312.102511 eV Core-core repulsion = 23688.337925 eV Total energy + Delta-G solvation = -3623.764586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.21773 -39.80034 -37.51436 -34.84409 -34.09770 -33.52645 -32.12580 -32.02509 -29.33726 -29.15296 -27.50688 -26.86144 -24.22953 -23.32316 -22.93696 -22.61662 -21.62330 -20.38072 -19.36433 -17.35870 -17.18880 -16.91150 -15.99252 -15.78282 -15.32611 -14.99822 -14.78693 -14.66729 -14.14185 -13.78770 -13.63324 -13.61434 -13.46614 -13.34211 -13.22397 -12.74722 -12.55418 -12.41105 -12.26610 -12.25302 -12.05072 -11.90582 -11.67357 -11.49522 -10.89299 -10.87971 -10.58566 -10.51004 -10.17478 -10.04602 -9.99570 -9.85543 -9.24602 -9.09336 -8.97097 -8.92566 -8.51813 -7.09154 -6.14180 -3.14802 0.56273 0.96313 2.56456 2.91097 3.47298 3.48307 3.52966 3.67014 3.90199 4.32299 4.39372 4.47918 4.61772 4.75874 4.92693 5.02350 5.06129 5.17987 5.19794 5.24422 5.25956 5.31345 5.39031 5.46002 5.47504 5.56267 5.59128 5.64775 5.71079 5.74947 5.80365 5.91069 5.91671 6.00949 6.02053 6.09961 6.24903 6.32196 6.35246 6.40287 6.41494 6.64726 6.78234 6.92004 7.38239 7.72014 7.75995 8.10654 8.71433 9.17894 10.04365 10.19420 11.34109 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003399 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.388276 B = 8236.531858 C = 9231.033050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.147 3.853 3 C -0.186 4.186 4 C -0.037 4.037 5 C -0.186 4.186 6 C 0.567 3.433 7 O -0.528 6.528 8 N -0.594 5.594 9 C 0.104 3.896 10 C -0.149 4.149 11 C 0.185 3.815 12 H 0.049 0.951 13 N -0.735 5.735 14 C -0.333 4.333 15 H 0.065 0.935 16 C -0.044 4.044 17 N -0.943 5.943 18 Si 1.082 2.918 19 H -0.295 1.295 20 H -0.295 1.295 21 H -0.288 1.288 22 C -0.136 4.136 23 C 0.147 3.853 24 H 0.073 0.927 25 C -0.135 4.135 26 C 0.185 3.815 27 C -0.122 4.122 28 N -0.488 5.488 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.367 0.633 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 2.059 -16.975 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.063 4.063 5 C -0.191 4.191 6 C 0.355 3.645 7 O -0.407 6.407 8 N -0.326 5.326 9 C -0.019 4.019 10 C -0.190 4.190 11 C 0.074 3.926 12 H 0.067 0.933 13 N -0.377 5.377 14 C -0.464 4.464 15 H 0.083 0.917 16 C -0.242 4.242 17 N -0.588 5.588 18 Si 0.913 3.087 19 H -0.223 1.223 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.175 4.175 23 C 0.045 3.955 24 H 0.091 0.909 25 C -0.192 4.192 26 C 0.047 3.953 27 C -0.179 4.179 28 N -0.198 5.198 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.200 0.800 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.137 1.413 -15.797 21.246 hybrid contribution -0.056 0.525 -1.342 1.442 sum -14.193 1.938 -17.140 22.337 Atomic orbital electron populations 1.20771 0.88528 1.03786 1.03253 1.21478 0.97213 0.88238 0.92183 1.21862 0.94423 0.99498 1.04785 1.21725 0.94533 0.97247 0.92806 1.20809 0.94969 0.95015 1.08343 1.18071 0.85957 0.79392 0.81091 1.90802 1.69586 1.40581 1.39720 1.48169 1.07075 1.48838 1.28535 1.21993 0.96703 0.95634 0.87593 1.22653 1.00149 1.01812 0.94422 1.20096 0.90140 0.96552 0.85775 0.93321 1.42440 1.73644 1.13312 1.08263 1.20051 1.38963 0.94372 0.92972 0.91732 1.25770 0.98714 1.00947 0.98780 1.70846 1.48814 1.04287 1.34882 0.83209 0.76444 0.73649 0.75425 1.22327 1.22144 1.21375 1.22317 1.00876 1.00729 0.93587 1.21354 0.77711 0.99986 0.96474 0.90929 1.22211 0.98787 1.00243 0.97961 1.21329 0.88616 0.95028 0.90359 1.21017 1.01406 0.91654 1.03835 1.67445 1.08954 1.29131 1.14305 0.90142 0.90219 0.90418 0.84224 0.84234 0.91336 0.90349 0.92348 0.90546 0.80006 0.93306 0.90588 0.91820 0.90885 0.91420 0.93730 0.90225 0.90296 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.01 0.37 -0.37 16 2 C 0.15 1.52 6.78 -82.51 -0.56 0.96 16 3 C -0.19 -1.70 9.72 -39.50 -0.38 -2.08 16 4 C -0.04 -0.39 7.77 -38.87 -0.30 -0.69 16 5 C -0.19 -2.38 4.74 -104.82 -0.50 -2.88 16 6 C 0.57 8.02 6.62 -12.33 -0.08 7.94 16 7 O -0.53 -8.33 10.34 5.32 0.05 -8.28 16 8 N -0.59 -8.14 2.97 -166.32 -0.49 -8.63 16 9 C 0.10 1.36 5.45 -3.71 -0.02 1.34 16 10 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 11 C 0.18 3.51 2.73 -67.89 -0.19 3.32 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.74 -17.88 5.12 -53.38 -0.27 -18.16 16 14 C -0.33 -9.09 9.93 -15.06 -0.15 -9.24 16 15 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 16 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 17 N -0.94 -28.91 13.70 55.49 0.76 -28.15 16 18 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 19 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.14 -2.22 4.84 -26.61 -0.13 -2.35 16 23 C 0.15 2.07 3.49 -67.60 -0.24 1.84 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 C -0.13 -1.86 7.59 37.16 0.28 -1.57 16 26 C 0.19 2.44 6.82 -82.17 -0.56 1.88 16 27 C -0.12 -1.48 9.66 36.01 0.35 -1.13 16 28 N -0.49 -6.21 10.17 -5.42 -0.06 -6.27 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.38 8.07 -51.93 -0.42 -0.03 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.14 1.20 7.58 -52.49 -0.40 0.80 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.95 5.20 -51.93 -0.27 0.68 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 38 H 0.37 9.35 6.63 -40.82 -0.27 9.08 16 39 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.11 6.67 -51.93 -0.35 0.76 16 43 H 0.07 0.96 6.82 -51.93 -0.35 0.61 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.31 5.79 -51.93 -0.30 1.01 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -32.40 368.07 -9.24 -41.63 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.33 Total: 8.89 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.36 Total: -7.07 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.06 Total: -61.21 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.05 Total: -8.28 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.40 -9.24 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044870513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.521 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds