Wall clock time and date at job start Tue Mar 31 2020 11:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48501 * 109.47007 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00138 * 3 2 1 6 6 H 1.48499 * 109.47317 * 149.99914 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 N 1.46903 * 110.71882 * 206.13764 * 12 11 10 15 15 C 1.46908 * 110.99459 * 299.27400 * 14 12 11 16 16 C 1.53245 * 109.33416 * 172.74660 * 15 14 12 17 17 N 1.47081 * 108.51982 * 53.83568 * 16 15 14 18 18 C 1.34775 * 120.88167 * 128.79111 * 17 16 15 19 19 O 1.21614 * 120.00067 * 180.02562 * 18 17 16 20 20 C 1.43195 * 120.00057 * 0.02562 * 18 17 16 21 21 C 9.37319 * 138.04825 * 200.47298 * 9 1 2 22 22 C 8.53268 * 164.23798 * 165.38129 * 11 2 1 23 23 C 1.52995 * 117.50309 * 24.13756 * 22 21 20 24 24 C 1.52993 * 117.50427 * 315.50817 * 22 21 20 25 25 C 1.47081 * 118.23532 * 308.80908 * 17 16 15 26 26 C 1.46895 * 111.00149 * 174.97808 * 14 12 11 27 27 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 28 28 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 30 30 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 31 31 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 32 32 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 33 33 H 1.09000 * 109.49706 * 292.70617 * 15 14 12 34 34 H 1.09000 * 109.49136 * 52.79254 * 15 14 12 35 35 H 1.08994 * 109.62922 * 294.12357 * 16 15 14 36 36 H 1.08999 * 109.78459 * 173.63644 * 16 15 14 37 37 H 1.09003 * 115.54628 * 169.83726 * 22 21 20 38 38 H 1.09003 * 117.49955 * 359.97438 * 23 22 21 39 39 H 1.09000 * 117.50231 * 145.02019 * 23 22 21 40 40 H 1.09004 * 117.50325 * 214.97949 * 24 22 21 41 41 H 1.09000 * 117.49966 * 0.02562 * 24 22 21 42 42 H 1.08998 * 109.62655 * 291.47708 * 25 17 16 43 43 H 1.08999 * 109.62739 * 170.90138 * 25 17 16 44 44 H 1.08998 * 109.49213 * 307.21413 * 26 14 12 45 45 H 1.09004 * 109.49494 * 67.28537 * 26 14 12 46 46 H 1.09001 * 109.88389 * 300.46074 * 27 9 7 47 47 H 1.09004 * 109.87600 * 61.47032 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 7 1.1096 -5.8845 -0.9016 15 6 -0.0347 -6.7953 -1.0398 16 6 0.2870 -7.8576 -2.0964 17 7 1.5574 -8.5053 -1.7359 18 6 1.6555 -9.8479 -1.6714 19 8 2.7137 -10.3666 -1.3713 20 6 0.5136 -10.6637 -1.9563 21 6 -0.4234 -11.3325 -2.1891 22 6 -1.5966 -12.1710 -2.4833 23 6 -2.7896 -11.5015 -3.1683 24 6 -2.8773 -11.8965 -1.6927 25 6 2.7178 -7.6488 -1.4473 26 6 2.3004 -6.5947 -0.4164 27 6 1.9319 -3.7275 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5272 -2.4867 1.0189 30 1 -0.5992 -1.7590 -0.6152 31 1 -1.3589 -4.3328 -0.2776 32 1 -0.3518 -3.8985 -1.6994 33 1 -0.2308 -7.2808 -0.0838 34 1 -0.9142 -6.2301 -1.3483 35 1 0.3814 -7.3849 -3.0739 36 1 -0.5084 -8.6022 -2.1250 37 1 -1.3802 -13.2062 -2.7473 38 1 -2.7058 -10.4398 -3.4007 39 1 -3.3584 -12.0961 -3.8831 40 1 -3.5038 -12.7510 -1.4369 41 1 -2.8513 -11.0946 -0.9549 42 1 3.0458 -7.1561 -2.3626 43 1 3.5288 -8.2549 -1.0436 44 1 3.1143 -5.8842 -0.2727 45 1 2.0718 -7.0830 0.5310 46 1 2.5582 -3.8510 -0.8830 47 1 2.5307 -3.8632 0.9012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046027136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:56 Heat of formation + Delta-G solvation = 92.391779 kcal Electronic energy + Delta-G solvation = -26219.677828 eV Core-core repulsion = 22599.057267 eV Total energy + Delta-G solvation = -3620.620561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38483 -38.62520 -38.04234 -36.67182 -34.35277 -33.11734 -31.95278 -31.33813 -29.25967 -28.17869 -26.24218 -25.15619 -24.02556 -23.56030 -22.94102 -22.33313 -20.35418 -20.02865 -19.54931 -18.29762 -17.06985 -16.85939 -16.55889 -15.65231 -15.61854 -15.41577 -14.88587 -14.59608 -14.51098 -14.27667 -14.12316 -13.30530 -13.13411 -13.06398 -12.53143 -12.42939 -12.34744 -12.06423 -11.89481 -11.79497 -11.62059 -11.60319 -11.36503 -11.32808 -10.94800 -10.81298 -10.62614 -10.35476 -10.26346 -10.15831 -10.12111 -10.04669 -9.83016 -9.57334 -8.95693 -8.64425 -8.18265 -6.82422 -5.64851 -3.06215 1.22044 1.92252 2.68716 3.01349 3.40749 3.45574 3.47493 3.55628 3.63467 3.91316 4.24874 4.43168 4.43503 4.50777 4.72947 4.83779 4.89891 5.07040 5.09715 5.11148 5.25237 5.29530 5.34631 5.43864 5.48004 5.52498 5.54647 5.54796 5.60384 5.69078 5.74464 5.83241 5.89096 5.96445 6.21181 6.32644 6.52804 6.54627 6.64288 6.68459 6.89557 7.06771 7.16092 7.37414 7.51265 7.63585 7.82528 7.85503 8.36610 9.22704 9.83682 10.48340 11.39303 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002482 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.632023 B =11280.360616 C =12224.217374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.134 4.134 12 C 0.072 3.928 13 H 0.043 0.957 14 N -0.525 5.525 15 C 0.042 3.958 16 C 0.113 3.887 17 N -0.600 5.600 18 C 0.633 3.367 19 O -0.529 6.529 20 C -0.210 4.210 21 C -0.058 4.058 22 C -0.067 4.067 23 C -0.158 4.158 24 C -0.159 4.159 25 C 0.119 3.881 26 C 0.039 3.961 27 C 0.146 3.854 28 H 0.252 0.748 29 H 0.010 0.990 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -22.552 -5.393 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.173 4.173 12 C -0.036 4.036 13 H 0.061 0.939 14 N -0.251 5.251 15 C -0.087 4.087 16 C -0.010 4.010 17 N -0.332 5.332 18 C 0.422 3.578 19 O -0.407 6.407 20 C -0.213 4.213 21 C -0.060 4.060 22 C -0.085 4.085 23 C -0.195 4.195 24 C -0.196 4.196 25 C -0.003 4.003 26 C -0.090 4.090 27 C 0.020 3.980 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.560 -22.372 -5.672 23.740 hybrid contribution 0.250 0.457 0.919 1.057 sum -5.310 -21.915 -4.753 23.045 Atomic orbital electron populations 1.69789 1.04893 1.24735 1.57837 1.24785 0.95736 0.97707 1.02541 0.86065 0.78505 0.83306 0.77584 1.21572 1.21693 1.20759 1.19075 0.90510 0.82394 1.42808 0.90487 1.44429 1.01959 0.99644 1.86885 1.21920 0.84803 0.92427 0.98047 1.23093 0.94849 0.98377 1.00962 1.22707 0.98071 0.89800 0.93069 0.93919 1.62024 1.03718 1.08767 1.50543 1.22436 0.95038 0.93685 0.97535 1.21919 0.84758 0.95023 0.99254 1.48033 1.13017 1.04484 1.67681 1.14720 0.84667 0.81033 0.77419 1.90845 1.28508 1.72983 1.48345 1.20566 0.95578 0.99747 1.05377 1.21332 0.93949 0.96715 0.94022 1.18907 0.83889 0.98019 1.07649 1.23124 0.98404 1.02132 0.95863 1.23115 0.97062 1.04244 0.95132 1.21845 0.87598 0.91037 0.99778 1.22511 0.94877 0.95918 0.95672 1.21227 0.93316 0.85569 0.97907 0.93760 0.97219 0.87438 0.92847 0.91066 0.94700 0.88822 0.89908 0.89833 0.84779 0.87906 0.87307 0.87315 0.87990 0.89972 0.88464 0.88598 0.94576 0.94663 0.96576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.46 3.39 -170.07 -0.58 -16.03 16 10 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 11 C -0.13 -2.46 5.38 -24.58 -0.13 -2.60 16 12 C 0.07 1.24 2.65 -65.88 -0.17 1.06 16 13 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 14 N -0.53 -7.53 4.45 -224.15 -1.00 -8.53 16 15 C 0.04 0.50 5.47 -3.69 -0.02 0.48 16 16 C 0.11 1.19 6.49 -3.60 -0.02 1.16 16 17 N -0.60 -7.38 3.01 -175.34 -0.53 -7.91 16 18 C 0.63 8.82 7.56 -14.34 -0.11 8.72 16 19 O -0.53 -8.99 16.54 5.27 0.09 -8.90 16 20 C -0.21 -2.55 11.61 -38.83 -0.45 -3.00 16 21 C -0.06 -0.57 13.43 -37.13 -0.50 -1.07 16 22 C -0.07 -0.42 6.21 -93.43 -0.58 -1.00 16 23 C -0.16 -0.74 10.21 -26.73 -0.27 -1.02 16 24 C -0.16 -0.77 10.21 -26.73 -0.27 -1.05 16 25 C 0.12 1.44 6.60 -3.60 -0.02 1.42 16 26 C 0.04 0.51 5.45 -3.71 -0.02 0.49 16 27 C 0.15 3.04 5.70 -3.07 -0.02 3.03 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 31 H 0.05 0.86 7.93 -51.93 -0.41 0.44 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.06 6.80 -51.93 -0.35 0.71 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.75 6.39 -51.93 -0.33 0.42 16 37 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.10 1.19 7.06 -51.93 -0.37 0.83 16 44 H 0.10 1.27 6.78 -51.93 -0.35 0.92 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.74 7.70 -51.93 -0.40 0.34 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -32.64 377.49 -11.21 -43.85 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.56 Total: -2.50 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.86 Total: 3.56 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -1.54 Total: -58.75 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.64 -11.21 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046027136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.242 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds