Wall clock time and date at job start Tue Mar 31 2020 11:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48501 * 109.47007 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.46993 * 30.00138 * 3 2 1 6 6 H 1.48499 * 109.47317 * 149.99914 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 N 1.46903 * 110.71882 * 206.13764 * 12 11 10 15 15 C 1.46908 * 110.99459 * 299.27400 * 14 12 11 16 16 C 1.53245 * 109.33416 * 172.74660 * 15 14 12 17 17 N 1.47081 * 108.51982 * 53.83568 * 16 15 14 18 18 C 1.34775 * 120.88167 * 128.79111 * 17 16 15 19 19 O 1.21614 * 120.00067 * 180.02562 * 18 17 16 20 20 C 1.43195 * 120.00057 * 0.02562 * 18 17 16 21 21 C 9.37319 * 138.04825 * 200.47298 * 9 1 2 22 22 C 8.53268 * 164.23798 * 165.38129 * 11 2 1 23 23 C 1.52995 * 117.50309 * 24.13756 * 22 21 20 24 24 C 1.52993 * 117.50427 * 315.50817 * 22 21 20 25 25 C 1.47081 * 118.23532 * 308.80908 * 17 16 15 26 26 C 1.46895 * 111.00149 * 174.97808 * 14 12 11 27 27 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 28 28 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 30 30 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 31 31 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 32 32 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 33 33 H 1.09000 * 109.49706 * 292.70617 * 15 14 12 34 34 H 1.09000 * 109.49136 * 52.79254 * 15 14 12 35 35 H 1.08994 * 109.62922 * 294.12357 * 16 15 14 36 36 H 1.08999 * 109.78459 * 173.63644 * 16 15 14 37 37 H 1.09003 * 115.54628 * 169.83726 * 22 21 20 38 38 H 1.09003 * 117.49955 * 359.97438 * 23 22 21 39 39 H 1.09000 * 117.50231 * 145.02019 * 23 22 21 40 40 H 1.09004 * 117.50325 * 214.97949 * 24 22 21 41 41 H 1.09000 * 117.49966 * 0.02562 * 24 22 21 42 42 H 1.08998 * 109.62655 * 291.47708 * 25 17 16 43 43 H 1.08999 * 109.62739 * 170.90138 * 25 17 16 44 44 H 1.08998 * 109.49213 * 307.21413 * 26 14 12 45 45 H 1.09004 * 109.49494 * 67.28537 * 26 14 12 46 46 H 1.09001 * 109.88389 * 300.46074 * 27 9 7 47 47 H 1.09004 * 109.87600 * 61.47032 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 7 1.1096 -5.8845 -0.9016 15 6 -0.0347 -6.7953 -1.0398 16 6 0.2870 -7.8576 -2.0964 17 7 1.5574 -8.5053 -1.7359 18 6 1.6555 -9.8479 -1.6714 19 8 2.7137 -10.3666 -1.3713 20 6 0.5136 -10.6637 -1.9563 21 6 -0.4234 -11.3325 -2.1891 22 6 -1.5966 -12.1710 -2.4833 23 6 -2.7896 -11.5015 -3.1683 24 6 -2.8773 -11.8965 -1.6927 25 6 2.7178 -7.6488 -1.4473 26 6 2.3004 -6.5947 -0.4164 27 6 1.9319 -3.7275 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5272 -2.4867 1.0189 30 1 -0.5992 -1.7590 -0.6152 31 1 -1.3589 -4.3328 -0.2776 32 1 -0.3518 -3.8985 -1.6994 33 1 -0.2308 -7.2808 -0.0838 34 1 -0.9142 -6.2301 -1.3483 35 1 0.3814 -7.3849 -3.0739 36 1 -0.5084 -8.6022 -2.1250 37 1 -1.3802 -13.2062 -2.7473 38 1 -2.7058 -10.4398 -3.4007 39 1 -3.3584 -12.0961 -3.8831 40 1 -3.5038 -12.7510 -1.4369 41 1 -2.8513 -11.0946 -0.9549 42 1 3.0458 -7.1561 -2.3626 43 1 3.5288 -8.2549 -1.0436 44 1 3.1143 -5.8842 -0.2727 45 1 2.0718 -7.0830 0.5310 46 1 2.5582 -3.8510 -0.8830 47 1 2.5307 -3.8632 0.9012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046027136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:56 Heat of formation + Delta-G solvation = 72.591306 kcal Electronic energy + Delta-G solvation = -26220.536440 eV Core-core repulsion = 22599.057267 eV Total energy + Delta-G solvation = -3621.479174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43422 -39.94629 -38.50199 -38.11334 -35.71861 -34.13256 -33.61640 -32.33897 -31.00537 -29.58937 -27.69627 -26.38127 -25.41741 -24.61282 -23.26718 -23.21160 -21.85609 -21.43005 -20.88567 -19.27658 -18.87294 -17.83804 -17.35991 -17.13131 -16.69986 -16.45218 -16.00197 -15.93964 -15.87276 -15.41248 -15.21762 -14.92965 -14.41492 -14.19961 -13.59247 -13.50040 -13.45679 -13.41090 -13.01544 -12.94162 -12.76707 -12.70002 -12.58592 -12.39448 -12.36533 -12.30051 -11.99699 -11.82840 -11.77995 -11.60234 -11.46947 -11.39893 -11.04675 -10.74967 -10.73358 -9.99209 -9.33744 -8.87584 -7.76628 -5.20775 0.33952 1.10629 1.47586 1.49427 1.57883 1.78287 2.21440 2.48679 2.71904 2.87128 3.08910 3.33816 3.66585 3.68300 3.77453 3.84625 3.88647 3.99649 4.04751 4.10428 4.16902 4.23303 4.29603 4.35465 4.37790 4.52212 4.61881 4.67406 4.73475 4.80178 4.80498 4.89323 4.95451 4.98723 5.02088 5.08140 5.10766 5.12459 5.24043 5.26185 5.47480 5.66049 5.81040 5.98228 6.04318 6.09977 6.16251 6.32839 6.81127 7.12185 7.79288 8.42772 9.25422 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002482 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.632023 B =11280.360616 C =12224.217374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.114 4.114 12 C 0.090 3.910 13 H 0.046 0.954 14 N -0.529 5.529 15 C 0.043 3.957 16 C 0.118 3.882 17 N -0.598 5.598 18 C 0.632 3.368 19 O -0.572 6.572 20 C -0.263 4.263 21 C -0.022 4.022 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.152 4.152 25 C 0.124 3.876 26 C 0.044 3.956 27 C 0.144 3.856 28 H 0.247 0.753 29 H -0.015 1.015 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.153 0.847 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -24.230 -6.308 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.352 5.352 10 C 0.029 3.971 11 C -0.152 4.152 12 C -0.019 4.019 13 H 0.063 0.937 14 N -0.254 5.254 15 C -0.085 4.085 16 C -0.004 4.004 17 N -0.329 5.329 18 C 0.423 3.577 19 O -0.453 6.453 20 C -0.266 4.266 21 C -0.024 4.024 22 C -0.108 4.108 23 C -0.184 4.184 24 C -0.189 4.189 25 C 0.002 3.998 26 C -0.085 4.085 27 C 0.019 3.981 28 H 0.057 0.943 29 H 0.003 0.997 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.171 0.829 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -6.865 -24.066 -6.597 25.881 hybrid contribution 0.594 0.912 1.196 1.617 sum -6.271 -23.155 -5.401 24.590 Atomic orbital electron populations 1.70038 1.06140 1.25029 1.58672 1.25621 0.96675 1.00907 1.02757 0.85051 0.77516 0.79047 0.77542 1.21113 1.21977 1.19699 1.19433 0.90975 0.83765 1.42476 0.90325 1.44748 1.02883 1.00787 1.86811 1.21727 0.84037 0.94980 0.96400 1.22869 0.96782 0.94992 1.00601 1.22390 0.95800 0.89979 0.93720 0.93656 1.61968 1.04991 1.08899 1.49537 1.22523 0.94355 0.93576 0.98084 1.22001 0.84447 0.94919 0.99003 1.48113 1.13618 1.04207 1.66952 1.14941 0.84693 0.81467 0.76631 1.90806 1.30216 1.73773 1.50551 1.20375 0.96485 1.01544 1.08197 1.22093 0.93668 0.95193 0.91446 1.19293 0.83229 0.98537 1.09761 1.23260 0.96690 1.02195 0.96242 1.23237 0.95682 1.04755 0.95196 1.21781 0.87669 0.90644 0.99751 1.22471 0.94317 0.95845 0.95840 1.21340 0.94548 0.84593 0.97624 0.94294 0.99656 0.90732 0.89777 0.90949 0.94619 0.87635 0.89076 0.88035 0.82913 0.88220 0.85157 0.85256 0.88713 0.89272 0.88856 0.88945 0.94819 0.94702 0.96680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.51 10.09 21.65 0.22 -56.29 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -32.55 3.39 -691.99 -2.35 -34.89 16 10 C 0.15 7.53 5.89 86.86 0.51 8.04 16 11 C -0.11 -4.03 5.38 31.99 0.17 -3.86 16 12 C 0.09 2.98 2.65 46.10 0.12 3.10 16 13 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 14 N -0.53 -14.23 4.45 -863.08 -3.84 -18.07 16 15 C 0.04 0.91 5.47 86.38 0.47 1.38 16 16 C 0.12 2.22 6.49 86.35 0.56 2.78 16 17 N -0.60 -14.15 3.01 -826.91 -2.49 -16.64 16 18 C 0.63 17.57 7.56 85.49 0.65 18.22 16 19 O -0.57 -19.91 16.54 -4.07 -0.07 -19.98 16 20 C -0.26 -6.18 11.61 30.01 0.35 -5.84 16 21 C -0.02 -0.39 13.43 31.11 0.42 0.03 16 22 C -0.09 -0.89 6.21 -12.61 -0.08 -0.96 16 23 C -0.15 -0.87 10.21 30.59 0.31 -0.56 16 24 C -0.15 -0.99 10.21 30.59 0.31 -0.68 16 25 C 0.12 2.91 6.60 86.35 0.57 3.48 16 26 C 0.04 1.11 5.45 86.38 0.47 1.58 16 27 C 0.14 5.99 5.70 86.73 0.49 6.48 16 28 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.07 4.16 5.87 -2.38 -0.01 4.15 16 31 H 0.08 2.48 7.93 -2.39 -0.02 2.46 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 2.03 6.80 -2.39 -0.02 2.02 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.58 6.39 -2.39 -0.02 1.56 16 37 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.09 2.31 7.06 -2.39 -0.02 2.29 16 44 H 0.09 2.39 6.78 -2.39 -0.02 2.37 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.04 1.45 7.70 -2.39 -0.02 1.43 16 47 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -72.66 377.49 1.12 -71.54 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.96 Total: 9.22 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.66 Total: 17.25 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -8.46 Total: -125.90 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.66 1.12 -71.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046027136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.129 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds