Wall clock time and date at job start Tue Mar 31 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 119.61546 * 2 1 4 4 C 1.38631 * 119.16008 * 179.74867 * 3 2 1 5 5 C 1.38677 * 118.41954 * 0.51483 * 4 3 2 6 6 C 1.50694 * 120.41986 * 179.78215 * 5 4 3 7 7 C 1.50708 * 109.47163 * 269.72134 * 6 5 4 8 8 O 1.21275 * 119.99974 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00045 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.21223 * 33.06027 * 10 9 7 12 12 C 1.50130 * 110.25287 * 154.99521 * 10 9 7 13 13 C 1.54840 * 110.81487 * 216.79841 * 12 10 9 14 14 C 1.54903 * 110.14127 * 321.12811 * 13 12 10 15 15 N 1.43429 * 116.08274 * 318.64541 * 14 13 12 16 16 C 1.36939 * 120.53726 * 271.58948 * 15 14 13 17 17 H 1.08009 * 119.99848 * 140.20924 * 16 15 14 18 18 C 1.38807 * 120.00045 * 320.20656 * 16 15 14 19 19 N 1.31621 * 119.99851 * 156.34173 * 18 16 15 20 20 Si 1.86796 * 119.99957 * 336.34793 * 18 16 15 21 21 H 1.48497 * 109.47406 * 95.57200 * 20 18 16 22 22 H 1.48506 * 109.46838 * 215.57111 * 20 18 16 23 23 H 1.48494 * 109.47144 * 335.56935 * 20 18 16 24 24 C 1.50174 * 118.92758 * 91.56630 * 15 14 13 25 25 C 1.46237 * 107.53293 * 289.59186 * 24 15 14 26 26 C 1.38182 * 119.16131 * 359.50764 * 5 4 3 27 27 N 1.31853 * 119.61783 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46684 * 269.97270 * 1 2 3 29 29 H 1.08997 * 109.47165 * 29.97746 * 1 2 3 30 30 H 1.09004 * 109.47294 * 149.98045 * 1 2 3 31 31 H 1.07995 * 120.42378 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.79442 * 180.27280 * 4 3 2 33 33 H 1.08997 * 109.47370 * 149.72406 * 6 5 4 34 34 H 1.08997 * 109.47285 * 29.72005 * 6 5 4 35 35 H 0.97006 * 120.00209 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.20582 * 337.14565 * 12 10 9 37 37 H 1.09001 * 109.20818 * 96.45121 * 12 10 9 38 38 H 1.08998 * 109.36101 * 81.33677 * 13 12 10 39 39 H 1.09004 * 109.35239 * 200.92751 * 13 12 10 40 40 H 1.08998 * 108.15921 * 196.92649 * 14 13 12 41 41 H 1.09005 * 107.99665 * 80.23362 * 14 13 12 42 42 H 0.97003 * 119.99580 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.84706 * 170.08067 * 24 15 14 44 44 H 1.09004 * 109.84275 * 49.09360 * 24 15 14 45 45 H 1.09003 * 108.52032 * 297.16033 * 25 24 15 46 46 H 1.08995 * 108.52485 * 179.64364 * 25 24 15 47 47 H 1.08005 * 119.61630 * 180.25381 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 0.0053 5 6 4.2267 -0.0342 -0.0005 6 6 5.7322 -0.0987 0.0000 7 6 6.2346 -0.1200 -1.4208 8 8 5.4475 -0.0865 -2.3428 9 7 7.5585 -0.1772 -1.6666 10 6 8.0468 -0.1973 -3.0477 11 1 7.3892 0.3903 -3.6883 12 6 9.4481 0.3379 -3.1112 13 6 9.6632 1.1647 -4.4026 14 6 8.9348 0.4932 -5.5934 15 7 9.0283 -0.9363 -5.6648 16 6 10.0692 -1.5334 -6.3246 17 1 10.5304 -2.4201 -5.9152 18 6 10.5315 -0.9991 -7.5193 19 7 11.7625 -1.2426 -7.9165 20 14 9.4067 0.0658 -8.5634 21 1 9.6515 1.4972 -8.2529 22 1 9.6835 -0.1832 -10.0011 23 1 7.9911 -0.2701 -8.2665 24 6 7.9665 -1.7676 -5.0040 25 6 8.1371 -1.6319 -3.5580 26 6 3.4766 -1.1947 -0.0010 27 7 2.1586 -1.1463 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6507 2.1373 -0.0004 32 1 4.1366 2.1140 0.0099 33 1 6.0570 -1.0035 0.5137 34 1 6.1332 0.7748 0.5140 35 1 8.1880 -0.2043 -0.9291 36 1 9.6289 0.9733 -2.2442 37 1 10.1510 -0.4950 -3.0973 38 1 9.2682 2.1702 -4.2579 39 1 10.7298 1.2253 -4.6192 40 1 9.3405 0.9067 -6.5167 41 1 7.8799 0.7622 -5.5380 42 1 12.0857 -0.8689 -8.7512 43 1 8.0806 -2.8121 -5.2937 44 1 6.9798 -1.4075 -5.2955 45 1 9.1121 -2.0358 -3.2850 46 1 7.3692 -2.2249 -3.0615 47 1 3.9755 -2.1527 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052929567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:47 Heat of formation + Delta-G solvation = 19.910183 kcal Electronic energy + Delta-G solvation = -26610.834145 eV Core-core repulsion = 22987.070547 eV Total energy + Delta-G solvation = -3623.763599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69167 -39.72624 -37.93864 -34.86921 -34.21627 -32.48714 -32.45396 -31.87490 -30.91904 -29.84541 -26.70957 -25.90889 -24.17515 -23.70613 -23.23223 -21.93732 -20.39168 -20.20605 -19.57128 -17.07029 -16.93074 -16.65217 -16.37333 -16.19827 -15.38087 -15.04202 -14.81660 -14.62336 -14.53409 -14.09711 -13.75940 -13.51025 -13.45188 -13.22374 -12.87453 -12.63558 -12.55297 -12.49802 -12.34480 -12.05942 -11.85767 -11.75285 -11.64621 -11.09422 -10.74038 -10.52623 -10.50086 -10.15722 -10.02036 -9.95173 -9.77122 -9.66964 -9.62844 -9.46233 -8.94595 -8.86027 -8.43525 -6.73150 -5.99998 -3.42063 0.87865 1.11506 2.65566 3.17983 3.34679 3.49271 3.57820 3.65766 4.08040 4.41731 4.48002 4.55320 4.67495 4.75560 4.82363 4.94871 5.03306 5.13581 5.20914 5.29304 5.30224 5.31389 5.34824 5.39162 5.55574 5.56636 5.75857 5.89290 5.91149 5.91151 5.91781 6.03980 6.19492 6.26565 6.31619 6.48150 6.50791 6.53637 6.67839 6.77158 6.77983 6.87163 6.90404 6.99407 7.57762 7.81718 8.10362 8.28671 8.37433 9.03262 9.73063 10.18973 11.15454 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.002740 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.661315 B =10215.505956 C =10591.352252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.171 4.171 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.098 4.098 7 C 0.510 3.490 8 O -0.530 6.530 9 N -0.723 5.723 10 C 0.148 3.852 11 H 0.093 0.907 12 C -0.113 4.113 13 C -0.137 4.137 14 C 0.145 3.855 15 N -0.600 5.600 16 C -0.266 4.266 17 H 0.075 0.925 18 C 0.040 3.960 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.139 3.861 25 C -0.136 4.136 26 C 0.119 3.881 27 N -0.484 5.484 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.396 0.604 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.029 0.971 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.817 5.479 20.852 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.139 4.139 7 C 0.295 3.705 8 O -0.406 6.406 9 N -0.374 5.374 10 C 0.045 3.955 11 H 0.111 0.889 12 C -0.151 4.151 13 C -0.178 4.178 14 C 0.018 3.982 15 N -0.323 5.323 16 C -0.395 4.395 17 H 0.092 0.908 18 C -0.161 4.161 19 N -0.538 5.538 20 Si 0.706 3.294 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.194 1.194 24 C 0.014 3.986 25 C -0.176 4.176 26 C -0.038 4.038 27 N -0.193 5.193 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.230 0.770 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.747 4.700 20.014 25.896 hybrid contribution 0.537 1.460 -0.336 1.591 sum -15.211 6.160 19.678 25.623 Atomic orbital electron populations 1.20705 0.88950 1.03523 1.02886 1.21295 0.97022 0.88462 0.94778 1.21897 0.94731 0.99252 1.03238 1.21419 0.94433 0.97690 0.94914 1.20261 0.95247 0.94592 1.02206 1.20608 0.92296 1.05455 0.95559 1.20429 0.82608 0.76592 0.90848 1.90752 1.55170 1.48598 1.46101 1.46259 1.06690 1.75046 1.09376 1.20372 0.96171 0.97818 0.81181 0.88878 1.21693 0.95195 1.00418 0.97780 1.22746 1.02135 0.97053 0.95871 1.20690 0.96463 0.85470 0.95606 1.44201 1.25525 0.99851 1.62733 1.18693 1.06746 1.12885 1.01150 0.90768 1.25532 0.95817 0.98019 0.96778 1.69895 1.14253 1.46575 1.23107 0.86923 0.83173 0.79797 0.79539 1.21392 1.22947 1.19390 1.20376 0.91352 0.96448 0.90375 1.21292 1.01510 0.95494 0.99300 1.22561 0.89226 0.97824 0.94191 1.67519 1.09742 1.29365 1.12722 0.90532 0.90768 0.90459 0.84892 0.85012 0.87662 0.87897 0.77012 0.93328 0.90713 0.93234 0.91712 0.93933 0.95280 0.92746 0.91328 0.94854 0.91730 0.93527 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.12 1.31 6.78 -82.59 -0.56 0.75 16 3 C -0.17 -1.64 9.74 -39.44 -0.38 -2.02 16 4 C -0.06 -0.58 9.86 -39.27 -0.39 -0.97 16 5 C -0.12 -1.26 4.39 -104.48 -0.46 -1.72 16 6 C -0.10 -0.81 5.86 -29.03 -0.17 -0.98 16 7 C 0.51 6.40 7.82 -10.98 -0.09 6.32 16 8 O -0.53 -9.27 15.69 5.56 0.09 -9.18 16 9 N -0.72 -8.48 4.96 -55.44 -0.27 -8.75 16 10 C 0.15 2.30 2.23 -69.60 -0.16 2.14 16 11 H 0.09 1.70 5.70 -51.93 -0.30 1.41 16 12 C -0.11 -1.75 5.30 -27.19 -0.14 -1.90 16 13 C -0.14 -2.50 6.41 -24.76 -0.16 -2.66 16 14 C 0.15 3.19 4.22 -4.66 -0.02 3.17 16 15 N -0.60 -14.14 2.14 -175.08 -0.37 -14.52 16 16 C -0.27 -7.34 9.92 -15.06 -0.15 -7.49 16 17 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 18 C 0.04 1.13 5.28 -17.43 -0.09 1.04 16 19 N -0.90 -27.18 13.97 55.49 0.78 -26.41 16 20 Si 0.88 22.55 25.26 -169.99 -4.29 18.25 16 21 H -0.29 -7.17 6.73 56.52 0.38 -6.79 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.14 2.82 6.11 -5.20 -0.03 2.79 16 25 C -0.14 -2.32 4.92 -30.18 -0.15 -2.47 16 26 C 0.12 1.37 10.86 -17.55 -0.19 1.18 16 27 N -0.48 -6.08 10.27 -9.47 -0.10 -6.18 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.11 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.10 0.59 8.09 -51.93 -0.42 0.16 16 35 H 0.40 3.33 8.52 -40.82 -0.35 2.98 16 36 H 0.05 0.62 7.85 -51.93 -0.41 0.21 16 37 H 0.07 1.27 6.83 -51.93 -0.35 0.92 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.04 1.03 3.40 -51.93 -0.18 0.86 16 41 H 0.03 0.61 6.88 -51.93 -0.36 0.25 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 1.39 7.99 -51.93 -0.42 0.98 16 44 H 0.03 0.69 8.12 -51.93 -0.42 0.26 16 45 H 0.06 1.13 6.93 -51.93 -0.36 0.77 16 46 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 47 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -34.55 370.73 -8.71 -43.26 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.35 Total: 1.15 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.77 Total: -3.22 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.03 Total: -55.85 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.29 Total: 18.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.55 -8.71 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052929567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.173 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds