Wall clock time and date at job start Tue Mar 31 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38223 * 119.61546 * 2 1 4 4 C 1.38631 * 119.16008 * 179.74867 * 3 2 1 5 5 C 1.38677 * 118.41954 * 0.51483 * 4 3 2 6 6 C 1.50694 * 120.41986 * 179.78215 * 5 4 3 7 7 C 1.50708 * 109.47163 * 269.72134 * 6 5 4 8 8 O 1.21275 * 119.99974 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99972 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00045 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.21223 * 33.06027 * 10 9 7 12 12 C 1.50130 * 110.25287 * 154.99521 * 10 9 7 13 13 C 1.54840 * 110.81487 * 216.79841 * 12 10 9 14 14 C 1.54903 * 110.14127 * 321.12811 * 13 12 10 15 15 N 1.43429 * 116.08274 * 318.64541 * 14 13 12 16 16 C 1.36939 * 120.53726 * 271.58948 * 15 14 13 17 17 H 1.08009 * 119.99848 * 140.20924 * 16 15 14 18 18 C 1.38807 * 120.00045 * 320.20656 * 16 15 14 19 19 N 1.31621 * 119.99851 * 156.34173 * 18 16 15 20 20 Si 1.86796 * 119.99957 * 336.34793 * 18 16 15 21 21 H 1.48497 * 109.47406 * 95.57200 * 20 18 16 22 22 H 1.48506 * 109.46838 * 215.57111 * 20 18 16 23 23 H 1.48494 * 109.47144 * 335.56935 * 20 18 16 24 24 C 1.50174 * 118.92758 * 91.56630 * 15 14 13 25 25 C 1.46237 * 107.53293 * 289.59186 * 24 15 14 26 26 C 1.38182 * 119.16131 * 359.50764 * 5 4 3 27 27 N 1.31853 * 119.61783 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.46684 * 269.97270 * 1 2 3 29 29 H 1.08997 * 109.47165 * 29.97746 * 1 2 3 30 30 H 1.09004 * 109.47294 * 149.98045 * 1 2 3 31 31 H 1.07995 * 120.42378 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.79442 * 180.27280 * 4 3 2 33 33 H 1.08997 * 109.47370 * 149.72406 * 6 5 4 34 34 H 1.08997 * 109.47285 * 29.72005 * 6 5 4 35 35 H 0.97006 * 120.00209 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.20582 * 337.14565 * 12 10 9 37 37 H 1.09001 * 109.20818 * 96.45121 * 12 10 9 38 38 H 1.08998 * 109.36101 * 81.33677 * 13 12 10 39 39 H 1.09004 * 109.35239 * 200.92751 * 13 12 10 40 40 H 1.08998 * 108.15921 * 196.92649 * 14 13 12 41 41 H 1.09005 * 107.99665 * 80.23362 * 14 13 12 42 42 H 0.97003 * 119.99580 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.84706 * 170.08067 * 24 15 14 44 44 H 1.09004 * 109.84275 * 49.09360 * 24 15 14 45 45 H 1.09003 * 108.52032 * 297.16033 * 25 24 15 46 46 H 1.08995 * 108.52485 * 179.64364 * 25 24 15 47 47 H 1.08005 * 119.61630 * 180.25381 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 0.0053 5 6 4.2267 -0.0342 -0.0005 6 6 5.7322 -0.0987 0.0000 7 6 6.2346 -0.1200 -1.4208 8 8 5.4475 -0.0865 -2.3428 9 7 7.5585 -0.1772 -1.6666 10 6 8.0468 -0.1973 -3.0477 11 1 7.3892 0.3903 -3.6883 12 6 9.4481 0.3379 -3.1112 13 6 9.6632 1.1647 -4.4026 14 6 8.9348 0.4932 -5.5934 15 7 9.0283 -0.9363 -5.6648 16 6 10.0692 -1.5334 -6.3246 17 1 10.5304 -2.4201 -5.9152 18 6 10.5315 -0.9991 -7.5193 19 7 11.7625 -1.2426 -7.9165 20 14 9.4067 0.0658 -8.5634 21 1 9.6515 1.4972 -8.2529 22 1 9.6835 -0.1832 -10.0011 23 1 7.9911 -0.2701 -8.2665 24 6 7.9665 -1.7676 -5.0040 25 6 8.1371 -1.6319 -3.5580 26 6 3.4766 -1.1947 -0.0010 27 7 2.1586 -1.1463 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6507 2.1373 -0.0004 32 1 4.1366 2.1140 0.0099 33 1 6.0570 -1.0035 0.5137 34 1 6.1332 0.7748 0.5140 35 1 8.1880 -0.2043 -0.9291 36 1 9.6289 0.9733 -2.2442 37 1 10.1510 -0.4950 -3.0973 38 1 9.2682 2.1702 -4.2579 39 1 10.7298 1.2253 -4.6192 40 1 9.3405 0.9067 -6.5167 41 1 7.8799 0.7622 -5.5380 42 1 12.0857 -0.8689 -8.7512 43 1 8.0806 -2.8121 -5.2937 44 1 6.9798 -1.4075 -5.2955 45 1 9.1121 -2.0358 -3.2850 46 1 7.3692 -2.2249 -3.0615 47 1 3.9755 -2.1527 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052929567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:46 Heat of formation + Delta-G solvation = -3.223770 kcal Electronic energy + Delta-G solvation = -26611.837309 eV Core-core repulsion = 22987.070547 eV Total energy + Delta-G solvation = -3624.766762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52150 -40.78181 -39.33407 -36.35007 -34.98197 -34.17987 -33.43308 -33.20274 -32.48337 -30.67384 -28.14056 -27.02440 -25.53630 -25.07134 -24.44408 -22.75200 -21.71398 -21.43841 -21.06597 -18.48919 -17.94869 -17.84629 -17.65957 -17.15105 -16.73231 -16.27352 -16.04500 -15.86268 -15.56210 -15.38510 -15.01195 -14.91800 -14.66910 -14.28623 -14.14915 -13.92101 -13.82616 -13.52834 -13.25310 -13.19889 -13.12669 -12.93613 -12.78201 -12.55995 -12.39338 -12.29764 -11.99927 -11.89678 -11.61798 -11.37921 -11.23442 -10.95037 -10.64905 -10.56494 -10.38862 -9.99876 -9.68008 -8.69850 -8.22239 -5.60441 0.14340 0.38357 1.27856 1.38229 1.50133 1.72044 2.24659 2.40607 2.88199 3.02191 3.27958 3.41277 3.71950 3.82455 3.85653 3.94356 4.05933 4.07997 4.12052 4.16304 4.38672 4.41610 4.42930 4.48192 4.59720 4.68118 4.71117 4.76745 4.78939 4.82481 4.89414 4.92188 5.00912 5.05535 5.10511 5.17749 5.21074 5.22204 5.32396 5.34000 5.44088 5.46879 5.67075 5.82931 5.95991 6.16718 6.67853 6.99992 7.06854 7.37989 7.61886 8.10514 8.97297 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.002740 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.661315 B =10215.505956 C =10591.352252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.101 3.899 3 C -0.176 4.176 4 C -0.069 4.069 5 C -0.130 4.130 6 C -0.086 4.086 7 C 0.510 3.490 8 O -0.584 6.584 9 N -0.708 5.708 10 C 0.160 3.840 11 H 0.070 0.930 12 C -0.103 4.103 13 C -0.133 4.133 14 C 0.138 3.862 15 N -0.610 5.610 16 C -0.251 4.251 17 H 0.043 0.957 18 C -0.011 4.011 19 N -0.941 5.941 20 Si 0.935 3.065 21 H -0.275 1.275 22 H -0.306 1.306 23 H -0.270 1.270 24 C 0.139 3.861 25 C -0.128 4.128 26 C 0.096 3.904 27 N -0.517 5.517 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.417 0.583 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.039 0.961 42 H 0.263 0.737 43 H 0.060 0.940 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.840 7.402 23.377 29.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.036 4.036 3 C -0.196 4.196 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.126 4.126 7 C 0.298 3.702 8 O -0.463 6.463 9 N -0.360 5.360 10 C 0.054 3.946 11 H 0.088 0.912 12 C -0.141 4.141 13 C -0.174 4.174 14 C 0.011 3.989 15 N -0.334 5.334 16 C -0.381 4.381 17 H 0.061 0.939 18 C -0.209 4.209 19 N -0.585 5.585 20 Si 0.764 3.236 21 H -0.202 1.202 22 H -0.234 1.234 23 H -0.195 1.195 24 C 0.016 3.984 25 C -0.168 4.168 26 C -0.060 4.060 27 N -0.227 5.227 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.254 0.746 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.773 6.637 22.603 28.918 hybrid contribution 0.796 0.821 -1.063 1.561 sum -15.976 7.457 21.540 27.836 Atomic orbital electron populations 1.20770 0.87245 1.03917 1.03898 1.21832 0.98456 0.88591 0.94758 1.22246 0.95091 0.99899 1.02320 1.21817 0.94881 0.98450 0.94296 1.20499 0.96467 0.94398 1.01882 1.20645 0.90739 1.08529 0.92719 1.21161 0.82049 0.74911 0.92100 1.90743 1.56437 1.50973 1.48145 1.46020 1.07158 1.74507 1.08362 1.19968 0.95678 0.95919 0.82990 0.91205 1.21569 0.94671 1.00118 0.97767 1.22652 1.00522 0.98629 0.95586 1.20790 0.97405 0.84380 0.96306 1.44290 1.25392 1.00904 1.62827 1.18575 1.06976 1.11612 1.00910 0.93919 1.26047 0.96717 1.00140 0.97949 1.69992 1.15754 1.48964 1.23768 0.85963 0.81074 0.78986 0.77546 1.20217 1.23449 1.19506 1.20448 0.90173 0.95507 0.92273 1.21132 1.01570 0.97189 0.96927 1.22848 0.89362 0.98894 0.94924 1.67505 1.10566 1.30684 1.13945 0.89144 0.88946 0.91450 0.82346 0.82836 0.84801 0.84388 0.74551 0.89455 0.92312 0.90424 0.93467 0.96372 0.94286 0.92787 0.92115 0.95003 0.92069 0.92478 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.17 71.24 0.72 -0.68 16 2 C 0.10 2.06 6.78 42.55 0.29 2.35 16 3 C -0.18 -3.01 9.74 22.36 0.22 -2.80 16 4 C -0.07 -1.18 9.86 22.47 0.22 -0.96 16 5 C -0.13 -2.41 4.39 -19.77 -0.09 -2.50 16 6 C -0.09 -1.08 5.86 29.10 0.17 -0.91 16 7 C 0.51 11.24 7.82 87.66 0.69 11.93 16 8 O -0.58 -19.46 15.69 -3.01 -0.05 -19.50 16 9 N -0.71 -14.03 4.96 -447.71 -2.22 -16.25 16 10 C 0.16 4.56 2.23 43.91 0.10 4.66 16 11 H 0.07 2.41 5.70 -2.39 -0.01 2.40 16 12 C -0.10 -2.92 5.30 30.30 0.16 -2.76 16 13 C -0.13 -4.60 6.41 31.87 0.20 -4.40 16 14 C 0.14 5.93 4.22 87.60 0.37 6.30 16 15 N -0.61 -28.81 2.14 -707.82 -1.51 -30.32 16 16 C -0.25 -14.14 9.92 84.03 0.83 -13.31 16 17 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 18 C -0.01 -0.66 5.28 84.86 0.45 -0.21 16 19 N -0.94 -58.47 13.97 21.65 0.30 -58.17 16 20 Si 0.93 47.44 25.26 68.60 1.73 49.17 16 21 H -0.28 -13.33 6.73 99.48 0.67 -12.66 16 22 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 23 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.14 5.64 6.11 83.58 0.51 6.16 16 25 C -0.13 -4.21 4.92 28.36 0.14 -4.07 16 26 C 0.10 2.13 10.86 84.67 0.92 3.05 16 27 N -0.52 -12.83 10.27 -183.88 -1.89 -14.72 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.13 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.14 0.81 8.09 -2.39 -0.02 0.79 16 35 H 0.42 4.99 8.52 -92.70 -0.79 4.20 16 36 H 0.09 1.82 7.85 -2.39 -0.02 1.80 16 37 H 0.06 1.88 6.83 -2.39 -0.02 1.87 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.02 0.87 3.40 -2.39 -0.01 0.86 16 41 H 0.04 1.59 6.88 -2.38 -0.02 1.57 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.06 2.50 7.99 -2.39 -0.02 2.48 16 44 H 0.03 1.30 8.12 -2.38 -0.02 1.28 16 45 H 0.06 2.06 6.93 -2.39 -0.02 2.05 16 46 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 47 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -78.12 370.73 2.42 -75.70 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.15 Total: 12.24 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.91 Total: 1.85 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.32 Total: -119.46 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.73 Total: 49.17 kcal Total: -78.12 2.42 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052929567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.475 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds